mRNA_Ecto-sp13_S_contig14863.3705.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14863.3705.1
Unique NamemRNA_Ecto-sp13_S_contig14863.3705.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14863.3705.1 vs. uniprot
Match: D8LEU7_ECTSI (Cysteine desulfurase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEU7_ECTSI)

HSP 1 Score: 316 bits (810), Expect = 3.610e-104
Identity = 163/171 (95.32%), Postives = 167/171 (97.66%), Query Frame = 1
Query:    1 IMHSNNEVGCLQPITEIAEACRQRRIMCHTDAAQSIGKVPVKVENLGVDMLTLVGHKFGAPKGVAALFVRRGLALPPMIHGGGQEAGRRAGTENVLLISGMGKAAEIVDVGLERLSKHLAAMRERLLELLMAANLGDGVKVHGPRNPSLRLPNTLSIGLPGVEARVLLERL 513
            IMHSNNEVG LQPITEIAEACRQR IMCHTDAAQSIGKVPVKV +LGVDMLTLVGHKFGAPKGVAALFVRRGLALPPMIHGGGQEAGRRAGTENVLLISGMGKAAEIVDV LERLSKHLAAMRERLLELLMAA+LGDGVKVHGPR+PSLRLPNTLSIGLPGVEARVLLER+
Sbjct:  253 IMHSNNEVGSLQPITEIAEACRQRGIMCHTDAAQSIGKVPVKVADLGVDMLTLVGHKFGAPKGVAALFVRRGLALPPMIHGGGQEAGRRAGTENVLLISGMGKAAEIVDVELERLSKHLAAMRERLLELLMAADLGDGVKVHGPRSPSLRLPNTLSIGLPGVEARVLLERV 423          
BLAST of mRNA_Ecto-sp13_S_contig14863.3705.1 vs. uniprot
Match: A0A2P6TKZ5_CHLSO (Cysteine desulfurase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TKZ5_CHLSO)

HSP 1 Score: 262 bits (670), Expect = 3.920e-83
Identity = 131/224 (58.48%), Postives = 174/224 (77.68%), Query Frame = 1
Query:    1 IMHSNNEVGCLQPITEIAEACRQRRIMCHTDAAQSIGKVPVKVENLGVDMLTLVGHKFGAPKGVAALFVRRGLALPPMIHGGGQEAGRRAGTENVLLISGMGKAAEIVDVGLERLSKHLAAMRERLLELLMAANLGDGVKVHGPRNPSLRLPNTLSIGLPGVEARVLLERLSETVAASAGSACHAGEATMSGVLQAMGVDEPTGFGTLRLSVGRHTTRKEVDQA 672
            +MHSNNEVG LQP+ ++A A RQR ++ H DAAQSIGKVPV V+ LGVDMLT+VGHKFGAPKGVAAL++RRG+A+  ++ GGGQE GRRAGTENVLL++G+GKAA++V   L   + H+ A+R+ L   L+A       +++GP + + RLPNTLSIG+ G++A  LL  LSE +AASAG+ACH+G  ++S VL+AMGV      GTLRLSVGRH+T+++VD+A
Sbjct:  181 LMHSNNEVGSLQPVADVAAAARQRGVLVHCDAAQSIGKVPVDVQQLGVDMLTIVGHKFGAPKGVAALYIRRGVAIERLLCGGGQEGGRRAGTENVLLLAGLGKAADLVSQELPATAAHMRALRDSLQSQLLAGLPAGAARINGPSDDAQRLPNTLSIGIKGIQASALLAELSEQLAASAGAACHSGGQSVSAVLRAMGVPHEHALGTLRLSVGRHSTQRDVDRA 404          
BLAST of mRNA_Ecto-sp13_S_contig14863.3705.1 vs. uniprot
Match: A0A7S4C1G4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C1G4_CHRCT)

HSP 1 Score: 250 bits (639), Expect = 5.750e-80
Identity = 136/227 (59.91%), Postives = 166/227 (73.13%), Query Frame = 1
Query:    1 IMHSNNEVGCLQPITEIAEACRQR--RIMCHTDAAQSIGKVPVKVENLGVDMLTLVGHKFGAPKGVAALFVRRGLALPPMIHGGGQEAGRRAGTENVLLISGMGKAAEIVDVGLERLSKHLAAMRERLLELLMAANLGDGVKVHGPRNPSLRLPNTLSIGLPGVEARVLLERLSETVAASAGSACHAGEA-TMSGVLQAMGVDEPTGFGTLRLSVGRHTTRKEVDQA 672
            +MHSNNEVG +QPI EI+   +     ++ HTDAAQSIGKVP+ V  LGVDMLTLVGHK GAPKGV AL+VR GL LPP++HGGGQEAGRRAGTE+VLL++ +G AA I    L  LS+H+ A R+RL   + +A   +  +V+GP N + RLPNTLSIGL GV A  LL  L + +AASAG+ACH+ EA T+S VL+AM V      GTLRLS GRHTT +EVDQA
Sbjct:   61 VMHSNNEVGSVQPIAEISSMVKSEMPHVLIHTDAAQSIGKVPIDVRELGVDMLTLVGHKMGAPKGVGALYVRAGLKLPPLLHGGGQEAGRRAGTESVLLLAALGAAATIARTDLVPLSRHMRATRDRLAYRITSALGPNATRVNGPHNDAQRLPNTLSIGLKGVSAAELLHTLRDQLAASAGAACHSQEAATVSAVLRAMRVPREYALGTLRLSTGRHTTMREVDQA 287          
BLAST of mRNA_Ecto-sp13_S_contig14863.3705.1 vs. uniprot
Match: A0A2P6V8I3_9CHLO (Cysteine desulfurase isoform A n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V8I3_9CHLO)

HSP 1 Score: 244 bits (622), Expect = 5.710e-76
Identity = 127/226 (56.19%), Postives = 167/226 (73.89%), Query Frame = 1
Query:    1 IMHSNNEVGCLQPITEIAEACRQRRIMCHTDAAQSIGKVPVKVENLGVDMLTLVGHKFGAPKGVAALFVRRGLALPPMIHGGGQEAGRRAGTENVLLISGMGKAAEIVDVGLERLSKHLAAMRERLLELLMAANLGDGVKVHGPRNPSLRLPNTLSIGLPGVEARVLLERLSETVAASAGSACHAGEATMSGVLQAMGVDEPTGFGTLRLSVGRHTTRKEVDQAGA 678
            +MHSNNEVG + P+ E+A   RQR I+ H+DAAQS+GKV V V  LGVD LT+VGHKFGAPKGVAALFVRRG+ L  ++ GGGQE G+RAGTE+VLL++G+G AA +V   L   + H+AA+R+ L + L+A       +++GP + + RLPNTLSIG+ G++A  LL  LS+ +AASAG+ACH+G  ++S VL+AM V  P   GTLRLSVGRHT + +VD A A
Sbjct:  179 VMHSNNEVGSILPVAELAALARQRGILLHSDAAQSLGKVEVDVTRLGVDALTIVGHKFGAPKGVAALFVRRGVHLERLLCGGGQEGGQRAGTESVLLLAGLGAAAAVVAAELPATAAHMAALRDSLQQQLLAGLPPGTARINGPSDAARRLPNTLSIGIAGIQASALLAELSQQLAASAGAACHSGGGSVSAVLRAMQVPLPHALGTLRLSVGRHTAQADVDAAAA 404          
BLAST of mRNA_Ecto-sp13_S_contig14863.3705.1 vs. uniprot
Match: E1ZDB8_CHLVA (Aminotran_5 domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZDB8_CHLVA)

HSP 1 Score: 242 bits (617), Expect = 3.050e-75
Identity = 129/226 (57.08%), Postives = 165/226 (73.01%), Query Frame = 1
Query:    4 MHSNNEVGCLQPITEIAEACRQRRIMCHTDAAQSIGKVPVKVENLGVDMLTLVGHKFGAPKGVAALFVRRGLALPPMIHGGGQEAGRRAGTENVLLISGMGKAAEIVDVGLERLSKHLAAMRERLLELLMAANLGDGVKVHGPRNPSLRLPNTLSIGLPGVEARVLLERLSETVAASAGSACHAGEAT-MSGVLQAMGVDEPTGFGTLRLSVGRHTTRKEVDQAGA 678
            MHSNNEVG +QP+ ++A   R+   + H DAAQS+GKV V V+ LGVDMLT+V HKFG PKGVAAL+VRRG+ L  ++ GGGQE GRRAGTENV+L++G+GKAAE+V   L   + H+AAMR+ L + L+A        +HGP + +LRLPNTLSIG+ G+ A  LL  LSE +AASAG+ACH+G    +S VLQAM V      GTLRLS GRHTT+++VD+A A
Sbjct:  173 MHSNNEVGSIQPVAQLAALARRAGALMHCDAAQSLGKVDVDVQQLGVDMLTVVAHKFGGPKGVAALYVRRGVRLERLLCGGGQEGGRRAGTENVVLVAGLGKAAELVSRELPATAAHMAAMRDSLQQQLLAGLPPSTALIHGPADDALRLPNTLSIGIRGIAAARLLAELSEQLAASAGAACHSGGGHGVSAVLQAMAVPTEHAVGTLRLSTGRHTTQQDVDRAAA 398          
BLAST of mRNA_Ecto-sp13_S_contig14863.3705.1 vs. uniprot
Match: A4S300_OSTLU (Aminotran_5 domain-containing protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S300_OSTLU)

HSP 1 Score: 239 bits (609), Expect = 4.120e-74
Identity = 132/237 (55.70%), Postives = 168/237 (70.89%), Query Frame = 1
Query:    1 IMHSNNEVGCLQPITEIAEACRQRRIMCHTDAAQSIGKVPVKVENLGVDMLTLVGHKFGAPKGVAALFVRRGLALPPM--IHGGGQEAGRRAGTENVLLISGMGKAAEIVDVGLERLSKHLAAMRERLLELLMAA---NLGDGVKVHGPRNPSLRLPNTLSIGLPGVEARVLLERLSETVAASAGSACH------AGEATMSGVLQAMGVDEPTGFGTLRLSVGRHTTRKEVDQAGA 678
            +MH+NNE G +QP+ EIA   R+R ++ HTDAAQS GKVPVKV+ LGVDM T+VGHK GAPKGV AL++RRG  L      +GGGQE+GRRAGTENVL I G+GKA EIV+  ++   KHL AMR+ L + L+ A     G GV+V+GPR+   RLPNTL+IG+ G+ A + L  LSE +AASAG+ACH      +G AT+S VL+AM V      GTLRLSVGRHT  ++V++  A
Sbjct:  154 VMHANNETGAIQPVAEIARRARERGVLTHTDAAQSAGKVPVKVDALGVDMATIVGHKIGAPKGVGALYIRRGTDLGDAKPFYGGGQESGRRAGTENVLHIVGLGKACEIVEREMDTCPKHLKAMRDDLQKRLVDALGGTDGSGVRVNGPRDDDKRLPNTLNIGIKGLLASITLMELSELLAASAGAACHTPDAATSGGATVSSVLEAMNVPMEYAVGTLRLSVGRHTVERDVERGAA 390          
BLAST of mRNA_Ecto-sp13_S_contig14863.3705.1 vs. uniprot
Match: C1EHB0_MICCC (Aminotran_5 domain-containing protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EHB0_MICCC)

HSP 1 Score: 233 bits (593), Expect = 6.000e-72
Identity = 126/229 (55.02%), Postives = 163/229 (71.18%), Query Frame = 1
Query:    1 IMHSNNEVGCLQPITEIAEACRQRR--IMCHTDAAQSIGKVPVKVENLGVDMLTLVGHKFGAPKGVAALFVRRGLALPPMIHGGGQEAGRRAGTENVLLISGMGKAAEIVDVGLERLSKHLAAMRERLLELLMAANLGD---GVKVHGPRNPSLRLPNTLSIGLPGVEARVLLERLSETVAASAGSACHAGEA--TMSGVLQAMGVDEPTGFGTLRLSVGRHTTRKEVD 666
            +MH+NNE G +QP+ E A   R++   ++ HTDAAQS GK+PVKV +LGVDM T+VGHK GAPKGVAAL+V        ++HGGGQE+GRRAGTENVL I G+G A E+V+   + L  H++AMR+ L   L +   GD   GV+V+GPR+ + RLPNTLS+G+ GV A  LL+ L + VAASAG+ACH+GEA  ++S VL AM V E    GTLRLSVGRHT   +V+
Sbjct:  157 VMHANNETGAIQPVAECARLAREKNEDVLIHTDAAQSCGKIPVKVNDLGVDMCTVVGHKIGAPKGVAALYVASAAPFSKLLHGGGQESGRRAGTENVLEIVGLGAACELVEREKDILPSHMSAMRDELSRRLASGLGGDDGSGVRVNGPRDDAKRLPNTLSVGIKGVSASQLLDVLKDDVAASAGAACHSGEAAASVSAVLSAMAVPEEYAIGTLRLSVGRHTCPADVE 385          
BLAST of mRNA_Ecto-sp13_S_contig14863.3705.1 vs. uniprot
Match: A0A7S0PSY7_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0PSY7_MICPS)

HSP 1 Score: 235 bits (599), Expect = 8.730e-71
Identity = 127/233 (54.51%), Postives = 165/233 (70.82%), Query Frame = 1
Query:    1 IMHSNNEVGCLQPITEIAEACRQRR--IMCHTDAAQSIGKVPVKVENLGVDMLTLVGHKFGAPKGVAALFVRRGLALPPMIHGGGQEAGRRAGTENVLLISGMGKAAEIVDVGLERLSKHLAAMRERLLELLMAA---NLGDGVKVHGPRNPSLRLPNTLSIGLPGVEARVLLERLSETVAASAGSACHAGEA--TMSGVLQAMGVDEPTGFGTLRLSVGRHTTRKEVDQAGA 678
            +MH+NNE G +QP+ E A   R++   ++ HTDAAQS GK+PVKV  L VDM T+VGHK GAPKGVAAL+V+ G     ++HGGGQE+GRRAGTENVL I G+G A E+V+   + L  H++AMR+ LL  L+     N G GV+V+GP + + RLPNTLS+G+ GV A  LL+ L + VAASAG+ACH+GEA  ++S VL+AM V E    GTLRLSVGRHT   +V+   A
Sbjct:  309 VMHANNETGAIQPVAECARLAREKNGDVLIHTDAAQSCGKIPVKVNELRVDMCTVVGHKIGAPKGVAALYVKSGAPFSKLVHGGGQESGRRAGTENVLEIVGLGAACELVEREKDVLPSHMSAMRDELLRRLVVGLGENDGSGVRVNGPIDDAERLPNTLSVGIRGVSASQLLDVLKDDVAASAGAACHSGEAAASVSAVLKAMAVPEEYAIGTLRLSVGRHTCPADVENGAA 541          
BLAST of mRNA_Ecto-sp13_S_contig14863.3705.1 vs. uniprot
Match: R1CHP5_EMIHU (Cysteine desulfurase NFS1 n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CHP5_EMIHU)

HSP 1 Score: 229 bits (584), Expect = 2.620e-70
Identity = 127/223 (56.95%), Postives = 156/223 (69.96%), Query Frame = 1
Query:    1 IMHSNNEVGCLQPITEIAEACRQRR--IMCHTDAAQSIGKVPVKVENLGVDMLTLVGHKFGAPKGVAALFVRRGLALPPMIHGGGQEAGRRAGTENVLLISGMGKAAEIVDVGLERLSKHLAAMRERLLELLMAANLGDGVKVHGPRNPSLRLPNTLSIGLPGVEARVLLERLSETVAASAGSACHAGEATMSGVLQAMGVDEPTGFGTLRLSVGRHTTRKEV 663
            +MHSNNEVG +QP+ +IA+A R  R  ++ HTDAAQSIGKV V    LGVD+LTLVGHKFGAPKG+AAL++R GLALP MIHGGGQE+GRRAGTE   ++  +G AA I       L +H+   R+ L   L+        +V+GP + S RLPNTLSIGL  V A  LLE LSE +AASAG+ACHA  A++S VL+A+ V      GTLRLS GRHTT +EV
Sbjct:  156 VMHSNNEVGSVQPVRQIADAVRALRPSVLVHTDAAQSIGKVDVDTRALGVDLLTLVGHKFGAPKGIAALYIRSGLALPRMIHGGGQESGRRAGTECTPMVVALGTAAAIARAEAAPLREHMRRTRDALESALVERLPAGSTRVNGPADASRRLPNTLSIGLRDVRAAELLETLSERLAASAGAACHANAASVSAVLRALRVPPEFAVGTLRLSTGRHTTLEEV 378          
BLAST of mRNA_Ecto-sp13_S_contig14863.3705.1 vs. uniprot
Match: D8U8R1_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U8R1_VOLCA)

HSP 1 Score: 227 bits (578), Expect = 1.460e-69
Identity = 130/249 (52.21%), Postives = 165/249 (66.27%), Query Frame = 1
Query:    1 IMHSNNEVGCLQPITEIAEACRQRR---------------------IMCHTDAAQSIGKVPVKVENLGVDMLTLVGHKFGAPKGVAALFVRRGLALPPMIHGGGQEAGRRAGTENVLLISGMGKAAEIVDVGLERLSKHLAAMRERLLELLMAA---NLGDGVKVHGPRNPSLRLPNTLSIGLPGVEARVLLERLSETVAASAGSACHAGEA-TMSGVLQAMGVDEPTGFGTLRLSVGRHTTRKEVDQA 672
            +MHSNNEVG +QPI EIA A R+                       ++ H+DAAQS GKV + V  LGVD LT+VGHKFGAPKGVAAL++RRG+ L    HGGGQE GRRAGTEN++ + G+G AAE+      RL +HL  M ERL+E L A       D ++++GPR P+ RLPNTLS+ + G+ + V L+RLS  +AASAG+ACH+GEA ++S VL+AM V      GTLRLS GRHTT +EVD A
Sbjct:  133 VMHSNNEVGAVQPIAEIAAAARRAHARFTXXXXXXXXXXGCTGTNGLLVHSDAAQSTGKVELDVRTLGVDALTIVGHKFGAPKGVAALYIRRGVHLDNYFHGGGQEGGRRAGTENIMQVVGLGAAAELARREGPRLRRHLGDMAERLMEALRAGLRPEDQDKLRLNGPRQPASRLPNTLSLSIRGLNSAVALQRLSGQLAASAGAACHSGEAASVSAVLRAMRVPFEFAAGTLRLSTGRHTTAEEVDAA 381          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14863.3705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEU7_ECTSI3.610e-10495.32Cysteine desulfurase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A2P6TKZ5_CHLSO3.920e-8358.48Cysteine desulfurase n=1 Tax=Chlorella sorokiniana... [more]
A0A7S4C1G4_CHRCT5.750e-8059.91Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A2P6V8I3_9CHLO5.710e-7656.19Cysteine desulfurase isoform A n=1 Tax=Micractiniu... [more]
E1ZDB8_CHLVA3.050e-7557.08Aminotran_5 domain-containing protein n=1 Tax=Chlo... [more]
A4S300_OSTLU4.120e-7455.70Aminotran_5 domain-containing protein n=2 Tax=Ostr... [more]
C1EHB0_MICCC6.000e-7255.02Aminotran_5 domain-containing protein (Fragment) n... [more]
A0A7S0PSY7_MICPS8.730e-7154.51Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
R1CHP5_EMIHU2.620e-7056.95Cysteine desulfurase NFS1 n=1 Tax=Emiliania huxley... [more]
D8U8R1_VOLCA1.460e-6952.21Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14863contigEcto-sp13_S_contig14863:3..4314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start1
Seed ortholog score244.2
Seed ortholog evalue5.8e-62
Seed eggNOG ortholog554065.XP_005848297.1
Model size678
KEGG rclassRC01789,RC02313
KEGG koko:K04487
KEGG ReactionR07460,R11528,R11529
KEGG Pathwayko00730,ko01100,ko04122,map00730,map01100,map04122
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.Aminotransferase class-V
EggNOG OGs34H8Y@3041,37MHQ@33090,COG1104@1,KOG1549@2759
Ec32 ortholog descriptioncysteine desulfurase
Ec32 orthologEc-21_005640.1
EC2.8.1.7
Cds size675
COG Functional cat.E
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02048,ko03016,ko03029
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14863.3705.1prot_Ecto-sp13_S_contig14863.3705.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14863 6..4314 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462792.9569478-UTR-Ecto-sp13_S_contig14863:2..51681462792.9569478-UTR-Ecto-sp13_S_contig14863:2..5Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14863 3..5 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462792.9680188-CDS-Ecto-sp13_S_contig14863:5..231681462792.9680188-CDS-Ecto-sp13_S_contig14863:5..23Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14863 6..23 +
1681462792.9772842-CDS-Ecto-sp13_S_contig14863:814..9191681462792.9772842-CDS-Ecto-sp13_S_contig14863:814..919Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14863 815..919 +
1681462792.9873204-CDS-Ecto-sp13_S_contig14863:1700..18921681462792.9873204-CDS-Ecto-sp13_S_contig14863:1700..1892Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14863 1701..1892 +
1681462792.9980316-CDS-Ecto-sp13_S_contig14863:2587..27791681462792.9980316-CDS-Ecto-sp13_S_contig14863:2587..2779Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14863 2588..2779 +
1681462793.007831-CDS-Ecto-sp13_S_contig14863:3536..36671681462793.007831-CDS-Ecto-sp13_S_contig14863:3536..3667Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14863 3537..3667 +
1681462793.018904-CDS-Ecto-sp13_S_contig14863:4277..43141681462793.018904-CDS-Ecto-sp13_S_contig14863:4277..4314Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14863 4278..4314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14863.3705.1

>prot_Ecto-sp13_S_contig14863.3705.1 ID=prot_Ecto-sp13_S_contig14863.3705.1|Name=mRNA_Ecto-sp13_S_contig14863.3705.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=225bp
MHSNNEVGCLQPITEIAEACRQRRIMCHTDAAQSIGKVPVKVENLGVDML
TLVGHKFGAPKGVAALFVRRGLALPPMIHGGGQEAGRRAGTENVLLISGM
GKAAEIVDVGLERLSKHLAAMRERLLELLMAANLGDGVKVHGPRNPSLRL
PNTLSIGLPGVEARVLLERLSETVAASAGSACHAGEATMSGVLQAMGVDE
PTGFGTLRLSVGRHTTRKEVDQAGA
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mRNA from alignment at Ecto-sp13_S_contig14863:3..4314+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14863.3705.1 ID=mRNA_Ecto-sp13_S_contig14863.3705.1|Name=mRNA_Ecto-sp13_S_contig14863.3705.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14863:3..4314+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCATGCACAGCAACAACGAGGTGAGGGATGGTCGGTGTTATGCACTTCT TGTTGCCTTGAAGGACGGCATTGGGATGGCCATGAGCAAAGACAGTTTTG TTATTCGGACCGTGCTTCAAGACGTCCCATTTTTGGATGCGTGCGATCGG AATGCGCCGACATCGCCTACGGAAAGCAAGAATCAGGTGTCTTCACGCTC GAAGTACGTCCTTGTGTCGTGAGTGGTGGGAGTGACGCTCGACCGCCATT GACTTTCATCGCTCCCACTGTCAAGCAAGCGGCGATTGTTTCAACCGGTG TCGTGTTTATGTTGTGACTGCCAGGCACAGCGATGACAAGAATTGTTGTG AGGTCTAGTCTATATATTCAGCGATATGTGTTTCTATGGGCAACGGTCAG GTCACCTACTTTCGTCGCTCGCAGCGGGCAACGGTGAAGCTCCGCTCATA ATTGACAGCGATCCTGGCGTGAGTAGACGGTCCCTTGGCATCGTTCTTCC AACAGCGACCATTCATCCGTTGGTGCACAGACGTCGGTTTTCGGTAAGGT GCCGATGTGTTGCGCTTGCTTTTTATTTGCATCCTGTTGTTGTTGACACC GAGCGGTGCAGTTGCCGTCATCGCGTTCAACAAGCCAAGCTAGAGGCGCG AATTCCACAAGTACAGAAACCCCAGTATCACCAAAAGTCGGTGCAACTAC TGGGCACACTTTCCTCGGAGTGTTTCCGACAGTAGATCACGAGAGAGGGT TCTTCCCCGCAGCGTATTATATGGTTACCTTTGCTCTTTATGCGTGTACC GGTCGTGTTCAGGTGGGGTGTCTTCAGCCCATCACAGAGATAGCGGAGGC TTGTCGGCAGCGACGGATCATGTGCCACACCGATGCCGCCCAAAGCATCG GAAAAGTGCCCGTGAAGGTGCGTGTTCTCAACCCCCCCATGGGCCTAGTC GGCAAGCATAATAGTTATTTGTGTTAGTTCATCGAATGATCCCGTGTTCA CAATCACATTGGCAAGGACTAGTGGCGAAAGGCGATGTACGTGTGATTGC GCTTTTGTGCCTTACTCTACCTTCCACGTTGATAAAGTGGCACAGCCAGT AGTATCTCCCGGGGAAGCTTTGAGGTACCGTCGTTTCGTCTGCCCAGACT CCTTGCTGAATCCGCCTGCGGGATACGGCGCTGTTTCGCCTCCCACAGGG GATGCTCATTGACTTCTACTCTACAACCGCGCGCGCACACAAACACACTT CTGTGTCGTCTTCTTATGTTAGTGCGTTCCAAATCCGGGAGAGACTGGAC CTTTGTGTCCGGCATTCTTCTGCGCCCCCCCTGTCGGGGGACCCTCCGAA TGAACGGCGTTATTTTTGTGTTTTTTCCCCGCTAGCACTGTCACCGTCCA CCCAGCAGCTCAGACGCTCGAGAAGGGGGGTATCCTCTGCCCGTTGTGTT TTACGCGCGCCCGATCAGAGAACCCCTCGGTCGGAAAAGGGTTCACGGGG CTCATTGGCCAGCCTGTCAAAGTTGCGGTCCATGCTATAATACTTTTTAT ACACACGTATGGACAGACAGGCAGTTAGGCTGCCACACCCGCACCACGGC AGCCCGTGTTGCTGCTCTTTTATGTCCCTCTTCTGATGGCAGCTAAATCA TGCCATTTTCTCTCGCGCGCCGGGCACTGAATGCAACAACCAAGGCAGGT GGAGAACCTAGGCGTGGACATGCTCACCCTCGTTGGCCACAAGTTCGGAG CGCCCAAGGGAGTGGCCGCTCTCTTCGTTCGGCGAGGGCTGGCATTACCG CCAATGATACACGGCGGGGGTCAAGAGGCAGGAAGGAGAGCGGGGACCGA GAACGTGCTCTTGATTTCTGGGATGGGCAAGGCGGCAGAGGTTTGTCGTC TTCTTCGTTTACTTCTTGTTGTCCTTCTTCGTTGATGAATTGTCGCCATC GTTGTCATTTATTTTTATCGTGTGCTTCGAGTGAAAGAAGACGACGTTGA GACGTCCATTCAATCGCCCCGTGTTTCGGACGAGGTCTAGCCTGACGAGT TTGGTCTCGGCTGCAGCCTAACAAAAAAGTGTATTAAGTCAACTAAAGAA TTCCCGGCAATACGAAGAGGTATGGGAAGCCGCGAACGGTAGGAGCGAGG ACCAGCAGAGGGTGCAATGACGTCCAACCGCCGCAATTGAGAGGACTTTT CCCGGCGATCTGCTTTTAGTTCAGTGGATCTCTCAGGGTGTTTGTTGGTG CTGGCGGGCGAACGAATATGTCCCACGATGCGACGACGAGTGCCCCGACC CTTGGCACTTGAAACTGTCGAAAGAGGGGGGGGATGTCTGTGGGGCTCAG TCGTGGAACCCAGACGTTAATCTACACACAGCGTGTGTGGACTTCGACTG AGTTGAGCTGTGCTGGTGTTTTTGCTGCTCTCTCTTCCATCGCATCCATC AACCCTTCCTGCTCGCTACCTTCCTCAAGGATGATGCAGTTCCCTTCGCG TGTCTGCACGTCATCTTTGACCCATGCCCCCCCGCACGTTTATGCTGTAC CAACCGTTGCATCGCGCCATGGGGTCTGACCGCAGATTGTTGACGTCGGG CTCGAGCGGCTCTCGAAGCACCTTGCCGCGATGCGCGAACGCCTTCTGGA ACTGCTCATGGCGGCGAATTTGGGGGACGGCGTAAAGGTACACGGTCCCC GTAACCCCTCCTTGCGTTTACCCAACACACTCAGCATCGGTCTCCCGGGG GTGGAGGCACGGGTGCTGCTCGAACGGGTGAGAGGAGCTTGAGAACTTTG CGTCAGCTAAAATACATACCCTCATGTAGATCTTTTGGAACAAATTCAAC GGGTATCCAGCCTATTCAACTTTCGACCGGTTGACGACAGTACATGTTAT CGGGGGGGGTTGACGATTTTTCGATTCACGTTCACGGAGTCGTGGGCGTT GCTGGGGAGCACGATGATGATTGTTGCCTAGAGTTCACACCTCAGGGCAC AAATATACTTATAAGGTGCTGGATGTCCGTGTCAACGGCCCGGCTCCCGA AGGCTTTTGCTTTAGTCAAGGCAACGAGGTACACCGCCTCGATAATGTTT CTGTTGCTGCGAACACAGCTTTTGGCCGGCAAGACCCCAGGCATATTTGG ATCGCCGAGTTGATCGACCCTACGGAGAACGAAGGTGTTTGTTGTGCGTC ATTCGCTTCGGATGCTGGGTAGGGAGCGGTACAGCCAGTCTTCACATATA ATCTCAAGCGTTGCGAATTTTCGAAGTAACCATCGCATCATCGATGAGCA TGGGGAAAGATGCCAAATGATGCTTGAGGCTTGAAAGGGGCTGAGTGCGA CAACGAATTGCCTCCCAAGGTCACATCAGCTTTCCTCCATCGAAAAATAA GCGTGCATACACTGCTGTAACAATCGTCACCACACCTGTGACTCCCATCC GACCATGAACGACCCCCCCTTGCCCTCCTTCACTGATTTGTGCACATACG TGATGTGTCACGTTTTTTGCTCTGTAATGCTTAGTTGTCAGAAACGGTAG CGGCGTCCGCGGGTTCGGCATGCCACGCCGGCGAAGCGACCATGTCTGGG GTATTGCAAGCGATGGGCGTGGATGAGCCGACGGGATTTGGCACCCTTCG GCTATCCGTCGGGAGGTATGCCACGGCATTGCTGAGCAGCACTGGATGGT TTTAAGAAGTTTCGTAAGCTCCCTGTTGCAAGCTGGAGATGAAGCGATGT ATTGTTGGCAACGCTTGAATGCCTGGTTTGGATCTGGAAGAACGACAGAT CATCCTGCATGCCTACAGCACACTCATCATTGGAGACACGTCCTGCTTTG TGTTATTAAGTGGCCGCCTGATAACATCGATTTCGACTTATTGTTCTCTC CGCTCCATCGCCCCGCTGAAATACACGACGAGAGCCTTCGGGGCTCATTC GTAGCAGATGGGGTTCATTACTCCTGGAATATCGCTTTAGAAGCCAGAGG GGCAAAACATCAGCTTTCGTCTCTTTGTCGAAACGAAACGGTGCTTCTTC TCATTTGGTGTGCACGACCGTCGCTACATACAGTACAGCGACACAGTAGT TCGCCGTATGTCCCCTCCTTTTTGCCTCACCCAACCTCTCGCACTTCCTC TCTTTCTCCTTTTTTCCGTCTCTTTTTCCCTCTCAACCGAGCGTTTCCGC CTACGGTATGTATATTTTACTGTCATCATTCTGCATGCCTCAACCTGTTC GAACCGCTGTTCGCGTTTGCTACAGGCATACCACGCGGAAAGAGGTGGAT CAAGCTGGGGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14863:3..4314+

>mRNA_Ecto-sp13_S_contig14863.3705.1 ID=mRNA_Ecto-sp13_S_contig14863.3705.1|Name=mRNA_Ecto-sp13_S_contig14863.3705.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=675bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14863:3..4314+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACAGCAACAACGAGGTGGGGTGTCTTCAGCCCATCACAGAGATAGC
GGAGGCTTGTCGGCAGCGACGGATCATGTGCCACACCGATGCCGCCCAAA
GCATCGGAAAAGTGCCCGTGAAGGTGGAGAACCTAGGCGTGGACATGCTC
ACCCTCGTTGGCCACAAGTTCGGAGCGCCCAAGGGAGTGGCCGCTCTCTT
CGTTCGGCGAGGGCTGGCATTACCGCCAATGATACACGGCGGGGGTCAAG
AGGCAGGAAGGAGAGCGGGGACCGAGAACGTGCTCTTGATTTCTGGGATG
GGCAAGGCGGCAGAGATTGTTGACGTCGGGCTCGAGCGGCTCTCGAAGCA
CCTTGCCGCGATGCGCGAACGCCTTCTGGAACTGCTCATGGCGGCGAATT
TGGGGGACGGCGTAAAGGTACACGGTCCCCGTAACCCCTCCTTGCGTTTA
CCCAACACACTCAGCATCGGTCTCCCGGGGGTGGAGGCACGGGTGCTGCT
CGAACGGTTGTCAGAAACGGTAGCGGCGTCCGCGGGTTCGGCATGCCACG
CCGGCGAAGCGACCATGTCTGGGGTATTGCAAGCGATGGGCGTGGATGAG
CCGACGGGATTTGGCACCCTTCGGCTATCCGTCGGGAGGCATACCACGCG
GAAAGAGGTGGATCAAGCTGGGGCT
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