mRNA_Ecto-sp13_S_contig1486.3701.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1486.3701.1
Unique NamemRNA_Ecto-sp13_S_contig1486.3701.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1486.3701.1 vs. uniprot
Match: D7FXP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP9_ECTSI)

HSP 1 Score: 325 bits (834), Expect = 2.420e-111
Identity = 184/206 (89.32%), Postives = 188/206 (91.26%), Query Frame = 1 
Query:    1 MWSAERQIDGLTARNAQLEKNLVCLEADVQTCHRMHDQLQTDLLCTIRDGETTLGKKDAEICSLTKDREIERLKAQLLHSKEVDGAQDIADRSTEPPSPSLHSRWGSADSVDGASIFRAGNNPAASKTPFGRKAPNASAAIIAGAAAGTFVYSKASLRATDKSATDDVIATSAVSDADRAAAEALIAAARLETCGLTMRRAATLAG 618
            MWSAERQIDGLTARNAQLE +L CLEADVQT HR+HD LQTDLLCTIRDGETTLGKKDAEICSLTKDREIERLKAQLLHSKEVDGAQDIADRSTEPPSPSLHSRWGSAD+VDGASIFRAGNN A SKTP GRKAPNASAAIIA  AAGTFVYSKAS RATDK AT+ VIATSAVSDAD  AAEALIA ARLE  GLTMRRAAT AG
Sbjct:    1 MWSAERQIDGLTARNAQLETHLACLEADVQTYHRVHDLLQTDLLCTIRDGETTLGKKDAEICSLTKDREIERLKAQLLHSKEVDGAQDIADRSTEPPSPSLHSRWGSADNVDGASIFRAGNNSADSKTPCGRKAPNASAAIIA--AAGTFVYSKASRRATDKLATN-VIATSAVSDADSFAAEALIADARLEAWGLTMRRAATSAG 203
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BLAST of mRNA_Ecto-sp13_S_contig1486.3701.1 vs. uniprot
Match: D7FU49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU49_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 7.910e-84
Identity = 161/222 (72.52%), Postives = 169/222 (76.13%), Query Frame = 1 
Query:    1 MWSAERQIDGLTARNAQLEKNLVCLEADVQTCHRMHDQLQTDLLCTIRDGETTLGKKDAEICSLTKDR------------EIERLKAQLL----HSKEVDGAQDIADRSTEPPSPSLHSRWGSADSVDGASIFRAGNNPAASKTPFGRKAPNASAAIIAGAAAGTFVYSKASLRATDKSATDDVIATSAVSDADRAAAEALIAAARLETCGLTMRRAATLAG 618
            MW AERQIDGLTAR AQLE NL  LEAD QTC R+HDQLQTDL+CTIRD ETTLGKKDAEICSLTKD             EIERLK QL       ++VDGAQDIADRSTEPPSPSLHSRWGS   VDGASIFRA N  AA K P GRK P++SAA+IA AAAGTFVYSKAS RAT KSAT  V+A S VSDADRAAAEALIA A LE  GLTMR A T AG
Sbjct:  171 MWCAERQIDGLTARKAQLETNLALLEADAQTCDRLHDQLQTDLMCTIRDDETTLGKKDAEICSLTKDNDILRQVNGDKDSEIERLKTQLALRVKDPEKVDGAQDIADRSTEPPSPSLHSRWGS---VDGASIFRASNTSAAFKAPVGRKTPDSSAAVIAAAAAGTFVYSKASRRATVKSATKIVVA-STVSDADRAAAEALIADAGLEAWGLTMR-ATTSAG 387
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BLAST of mRNA_Ecto-sp13_S_contig1486.3701.1 vs. uniprot
Match: D7G509_ECTSI (Uncharacterized protein n=5 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G509_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 9.490e-25
Identity = 87/199 (43.72%), Postives = 109/199 (54.77%), Query Frame = 1 
Query:    1 MWSAERQIDGLTARNAQLEKNLVCLEADVQTCHRMHDQLQTDLLCTIRDGETTLGKKDAEICSLT------------KDREIERLKAQLLHSKEVDGAQDIADRSTEPPSPSLHSRWGSADSVDGASIFRAGNNPAASKTPFGRKAPNASAAIIAGAAAGTFVYSKASLRATDKSATDDVIATSAVSDADRAAAEALIA 561
            MW AER +D LT  NA LE  L CLEADVQT H ++DQ ++D LC++RDGET L  KDAEI SL             KD EI+ LKAQL  + ++   Q+      E P  S            G S F+A  +P+ S         ++SAA+IA AA+GTFV SKAS   T   AT   + T+A    D+AAAE LIA
Sbjct:  170 MWCAERTVDSLTGANALLENKLACLEADVQTGHDLYDQFRSDFLCSLRDGETALSHKDAEISSLKQDNAQLVKANQDKDEEIKLLKAQL--AMQLKQPQEACTAGGEAPRTSA-----------GVSSFQAKGHPSVST--------DSSAAVIATAASGTFV-SKASRSGTKSVATTTYLDTTAD---DKAAAEFLIA 343
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1486.3701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FXP9_ECTSI2.420e-11189.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FU49_ECTSI7.910e-8472.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G509_ECTSI9.490e-2543.72Uncharacterized protein n=5 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1486contigEcto-sp13_S_contig1486:784..2914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size621
Hectar predicted targeting categoryother localisation
Exons5
Cds size621
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462792.5383015-CDS-Ecto-sp13_S_contig1486:783..8671681462792.5383015-CDS-Ecto-sp13_S_contig1486:783..867Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1486 784..867 +
1681462792.5473099-CDS-Ecto-sp13_S_contig1486:1093..12071681462792.5473099-CDS-Ecto-sp13_S_contig1486:1093..1207Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1486 1094..1207 +
1681462792.5661068-CDS-Ecto-sp13_S_contig1486:1499..15481681462792.5661068-CDS-Ecto-sp13_S_contig1486:1499..1548Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1486 1500..1548 +
1681462792.5786881-CDS-Ecto-sp13_S_contig1486:2042..20941681462792.5786881-CDS-Ecto-sp13_S_contig1486:2042..2094Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1486 2043..2094 +
1681462792.5886166-CDS-Ecto-sp13_S_contig1486:2592..29141681462792.5886166-CDS-Ecto-sp13_S_contig1486:2592..2914Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1486 2593..2914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1486.3701.1prot_Ecto-sp13_S_contig1486.3701.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1486 784..2914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1486.3701.1

>prot_Ecto-sp13_S_contig1486.3701.1 ID=prot_Ecto-sp13_S_contig1486.3701.1|Name=mRNA_Ecto-sp13_S_contig1486.3701.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=207bp
MWSAERQIDGLTARNAQLEKNLVCLEADVQTCHRMHDQLQTDLLCTIRDG
ETTLGKKDAEICSLTKDREIERLKAQLLHSKEVDGAQDIADRSTEPPSPS
LHSRWGSADSVDGASIFRAGNNPAASKTPFGRKAPNASAAIIAGAAAGTF
VYSKASLRATDKSATDDVIATSAVSDADRAAAEALIAAARLETCGLTMRR
AATLAG*
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mRNA from alignment at Ecto-sp13_S_contig1486:784..2914+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1486.3701.1 ID=mRNA_Ecto-sp13_S_contig1486.3701.1|Name=mRNA_Ecto-sp13_S_contig1486.3701.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2131bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1486:784..2914+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGTCCGCCGAGCGACAGATCGACGGGCTGACGGCGAGGAACGCCCA
GCTCGAGAAAAACCTAGTTTGCTTGGAGGCGGACGTGAGTCAAAGTTTTG
GTAGGGGGGGTGGAACAATCCGGCGGTTATTGACGTCTACATTTGCCACG
CGAGGGGTGCCCCGACGAAGGCTGCCCTTTGCGATGCCATCCTTCCGCAG
TCGAAACGCAACAAGCAAGAGTTTTCAGTGCCAAAACGCACTACTGTATC
TTCCCCACTAACACGACGTTGTTTCCGCTGCACCGCTATCTCGACGCTCG
GCGACCTCAGGTCCAGACGTGCCACCGAATGCACGACCAGCTGCAAACTG
ATCTCCTGTGCACGATCCGCGACGGCGAGACGACTCTGGGCAAGAAGGAT
GCGGAGATATGCTCATTGACCAAGGTGAATAATGATATGAGTCCCGACGG
GATGCCAACAGAAAGGATCTTGTTGCTGATTTCATTGTGTGTGCGCACAA
GAATTCCAAACAGGTTTCTCTGGTTGACGTTGTTGCATTGCTACCACCGC
GGCTTTCACGGTGAGGCTGATGAGGTAGAAAATGTTCGACGCTAGCTAGC
TGTCTGTGTGTGATGGCATGCACAGCAGTGACAGCACCACCTCCGTTTCG
GTTGTGTTGCGCTCTGTGCTACAATGACAGGACAACGTGCTGCTCCGCAA
CGCCAACGATGCGAAGGACCGAGAGATTGAACGCCTCAAGGCTCAGCTCC
TCCACTCCAAGGAAGGTCAGTGCACGTGTCGACGTGTTGGCGAGGTGTAG
TTCGCTAGTTGGGGGGTATTTGATCGCTTTGGGGAAGGGTTCCGACGAAC
GATCAATATACGTACGTCAAATTGGGCATCACAACCCGAGCCGAAGCGAT
TACTTAAGACGTATTTTGTTGTTGTCGAAGCGTGTGCGTTTGGACTAGGT
TGGCCAACGCCTTCATCGGAGGGGCATGGTCATGTGGAAGTTGTTGCAGC
TCGTCCTCTGCCAGCTCGTGTAGTGTATGGTTCCCGGTCGTACGTTGACA
ATAGTTTCAGGAACCTGTGTCGAAACCTCAACGAATCTGTGCATGTACCG
TCAACGTTTCCGTGGAGAGCAGTACAATTAGCGAATGTGCATGTTGTAAG
ATGGGTGTTCGAATGGATATGTCCCATGACAGCCTCTGTATCTCACAACG
CGCAGTCGTACTAACAACAACGTTCCCTTGTTTGCCCCTTTTTTCCCATT
TTGGTGCAGTTGACGGCGCGCAGGACATCGCCGACCGCTCGACCGAGCCG
CCCAGCCCCAGGTACGATACCAAATTGCATGACCGTTGCTCTGTAGACTT
GCCAGCGAACGGTTTCGGTCGTCTTGAAGTCCCCGTTGTCGGTGTGAAGA
TTGTGGATGTTTGTCGGCTGTGGCGACATTGTTTTCAGCATGCGTGTAGG
GGTTTTGCTCGGAGCTCTTTTTGCACCAGATATATATCACTGATGACTGT
AAACAAGGAAAGTGCGTTCTGCGATGCTTCATTCACGGGTTGATTCGCTA
TCGCTTTTTTGCTGTGATAGATTTCATGTCAAGACCATCCGTAGGATGGA
TGCTACGTTTGAGCATACTACGGGGGGAAGACGGGGGCGAGGTACCGTAT
CATCTTCCTCCATACCATAGTATCATCCGAAGAAAGGAGCAGCAAGAGAC
CATCCGCCTACTTGATTGTCCACCGGTTCCATGCTCATCCCCGCCTCCTT
CCTCCGACTTTGCCGTGCCACCGCCCCCCCCCCGCCGGCGCGTCCGCCAA
CTCAAACAGCCTGCACAGCAGGTGGGGAAGCGCGGATAGCGTGGACGGGG
CCTCGATTTTCCGGGCCGGCAACAATCCCGCCGCCTCCAAAACCCCCTTC
GGCAGGAAAGCGCCCAACGCATCCGCCGCCATCATCGCCGGTGCCGCTGC
CGGGACCTTCGTCTACTCCAAGGCCTCCCTCCGCGCGACCGACAAGTCGG
CCACCGACGACGTCATCGCCACCAGCGCCGTTTCCGACGCTGACAGGGCC
GCTGCGGAGGCATTGATCGCCGCCGCTAGGCTCGAAACCTGCGGGCTCAC
CATGAGGAGAGCTGCCACCCTCGCTGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1486:784..2914+

>mRNA_Ecto-sp13_S_contig1486.3701.1 ID=mRNA_Ecto-sp13_S_contig1486.3701.1|Name=mRNA_Ecto-sp13_S_contig1486.3701.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=621bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1486:784..2914+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGTCCGCCGAGCGACAGATCGACGGGCTGACGGCGAGGAACGCCCA
GCTCGAGAAAAACCTAGTTTGCTTGGAGGCGGACGTCCAGACGTGCCACC
GAATGCACGACCAGCTGCAAACTGATCTCCTGTGCACGATCCGCGACGGC
GAGACGACTCTGGGCAAGAAGGATGCGGAGATATGCTCATTGACCAAGGA
CCGAGAGATTGAACGCCTCAAGGCTCAGCTCCTCCACTCCAAGGAAGTTG
ACGGCGCGCAGGACATCGCCGACCGCTCGACCGAGCCGCCCAGCCCCAGC
CTGCACAGCAGGTGGGGAAGCGCGGATAGCGTGGACGGGGCCTCGATTTT
CCGGGCCGGCAACAATCCCGCCGCCTCCAAAACCCCCTTCGGCAGGAAAG
CGCCCAACGCATCCGCCGCCATCATCGCCGGTGCCGCTGCCGGGACCTTC
GTCTACTCCAAGGCCTCCCTCCGCGCGACCGACAAGTCGGCCACCGACGA
CGTCATCGCCACCAGCGCCGTTTCCGACGCTGACAGGGCCGCTGCGGAGG
CATTGATCGCCGCCGCTAGGCTCGAAACCTGCGGGCTCACCATGAGGAGA
GCTGCCACCCTCGCTGGGTGA
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