mRNA_Ecto-sp13_S_contig14855.3699.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14855.3699.1
Unique NamemRNA_Ecto-sp13_S_contig14855.3699.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14855.3699.1 vs. uniprot
Match: D8LT82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT82_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 2.270e-36
Identity = 81/117 (69.23%), Postives = 89/117 (76.07%), Query Frame = 3 
Query:  135 MSSTAMDDLNRLETHVRLGRDGQDADAGCAETVSTLSDGFHELQDISSRKNRKQLTSTEYALQEIRSRVRAIDERWEEVNVRATNTLDNIEEDDLDEKDPGRKRRSSNPVVDKRREA 485
            MSSTAMDDLN LETHVRL RDGQDADAGCAET+    + ++++   +                  RSRVRAIDERWEEVNVRATNTLDNIEEDDLDEKDPGRKRRSSNPV+DKRREA
Sbjct:    1 MSSTAMDDLNHLETHVRLCRDGQDADAGCAETL--FGNDYYQIPCTT------------------RSRVRAIDERWEEVNVRATNTLDNIEEDDLDEKDPGRKRRSSNPVIDKRREA 97
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14855.3699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT82_ECTSI2.270e-3669.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14855contigEcto-sp13_S_contig14855:1326..2511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size486
Hectar predicted targeting categoryother localisation
Exons3
Cds size417
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462792.4545746-UTR-Ecto-sp13_S_contig14855:1325..13931681462792.4545746-UTR-Ecto-sp13_S_contig14855:1325..1393Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14855 1326..1393 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462792.4669018-CDS-Ecto-sp13_S_contig14855:1393..15041681462792.4669018-CDS-Ecto-sp13_S_contig14855:1393..1504Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14855 1394..1504 +
1681462792.4760654-CDS-Ecto-sp13_S_contig14855:1820..19721681462792.4760654-CDS-Ecto-sp13_S_contig14855:1820..1972Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14855 1821..1972 +
1681462792.4847584-CDS-Ecto-sp13_S_contig14855:2357..25111681462792.4847584-CDS-Ecto-sp13_S_contig14855:2357..2511Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14855 2358..2511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14855.3699.1prot_Ecto-sp13_S_contig14855.3699.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14855 1394..2511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14855.3699.1

>prot_Ecto-sp13_S_contig14855.3699.1 ID=prot_Ecto-sp13_S_contig14855.3699.1|Name=mRNA_Ecto-sp13_S_contig14855.3699.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp
MPSAKRPLRKRTGRSGELLTPAMSSTAMDDLNRLETHVRLGRDGQDADAG
CAETVSTLSDGFHELQDISSRKNRKQLTSTEYALQEIRSRVRAIDERWEE
VNVRATNTLDNIEEDDLDEKDPGRKRRSSNPVVDKRREA
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mRNA from alignment at Ecto-sp13_S_contig14855:1326..2511+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14855.3699.1 ID=mRNA_Ecto-sp13_S_contig14855.3699.1|Name=mRNA_Ecto-sp13_S_contig14855.3699.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14855:1326..2511+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAGAGTAGGTTGATCTCACCTCTTTCGTCGCTGCTGTGTTGAGGAGGC
AGGCGGCACACGAGCACAATGCCCAGCGCGAAGAGACCGCTGCGCAAAAG
AACAGGCCGTTCCGGAGAGCTTCTTACTCCAGCCATGTCCTCTACTGCTA
TGGACGACCTCAATCGTCTCGAAACCCATGTACGGGGGCAGGCCAGCCAT
GGGAGAAAAATCTCAGTGCAGCCAAGGCCTAGCATGTTGTGGCAGGTTCT
GGATTCTACCTTTGTTGCGAATAACATATGTAGAAAATATGTACAGTACA
TAGGCGAAGATGAGTCGTCCGCCGGTAGAATGTGAGTTTACAACGTTGTA
CGAATAAGCCACAGTCATGCCCCCCGCCGTATCGTTCGTTGATTGCTTCT
GGTACCTGCCACCCGAACTTGCTCGTTTGCTCCCCTACTCTGTTTGGCTC
GTTCTTTTGCTCTGGCAACGCCGTCGCTTGTTGACGGACTCCCAGGTTCG
GTTGGGTCGGGACGGTCAGGATGCTGACGCTGGATGTGCTGAGACGGTGA
GCACGTTATCGGATGGTTTCCACGAGCTCCAAGACATCAGCTCTCGGAAA
AACCGAAAACAACTCACGTCTACTGAGTATGCTCTGCAAGAGATCAGGTG
CGCAGCTGCTGCAAGACACTCCGGCTATCGATCACTGGTTTGTGTAGCAT
GCACTCCCTCAGCTGACCCCCCCCAGGAGATGCACCGGAAGTTCTATGCA
ATATAAGGTTGTTGCTGTTGTTGCTGTTGTCGCTGTTGTTGTCTCCACAT
TAAAAACCGTAGACGGTGAAAATACTGAAGGTGGGCAGAAAGAGGCCGCC
CGTCTCCTTCGATTGTGTGTGCACTTCGAGAGGGTGCACACGTCGGGTGT
TACATCCACAGCGACATCCCCGTTCACAGAAGGCTTCACCCGATCACCTC
ATGGGTTGTGAACGTTGGGCTATGTAAGTTGAACTTTTGAGCTATTTGGC
AACGATTACTTCCAAATCCCCTGCACCACAAGGAGCCGTGTGCGAGCCAT
CGACGAGCGGTGGGAAGAAGTTAACGTCAGAGCGACCAACACTCTCGACA
ACATCGAAGAGGATGACTTGGACGAGAAGGACCCAGGCAGGAAACGAAGG
AGCTCGAACCCCGTGGTCGACAAGCGCAGAGAAGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14855:1326..2511+

>mRNA_Ecto-sp13_S_contig14855.3699.1 ID=mRNA_Ecto-sp13_S_contig14855.3699.1|Name=mRNA_Ecto-sp13_S_contig14855.3699.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14855:1326..2511+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCAGCGCGAAGAGACCGCTGCGCAAAAGAACAGGCCGTTCCGGAGA
GCTTCTTACTCCAGCCATGTCCTCTACTGCTATGGACGACCTCAATCGTC
TCGAAACCCATGTTCGGTTGGGTCGGGACGGTCAGGATGCTGACGCTGGA
TGTGCTGAGACGGTGAGCACGTTATCGGATGGTTTCCACGAGCTCCAAGA
CATCAGCTCTCGGAAAAACCGAAAACAACTCACGTCTACTGAGTATGCTC
TGCAAGAGATCAGGAGCCGTGTGCGAGCCATCGACGAGCGGTGGGAAGAA
GTTAACGTCAGAGCGACCAACACTCTCGACAACATCGAAGAGGATGACTT
GGACGAGAAGGACCCAGGCAGGAAACGAAGGAGCTCGAACCCCGTGGTCG
ACAAGCGCAGAGAAGCA
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