mRNA_Ecto-sp13_S_contig14853.3698.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14853.3698.1
Unique NamemRNA_Ecto-sp13_S_contig14853.3698.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14853.3698.1 vs. uniprot
Match: D8LAV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV7_ECTSI)

HSP 1 Score: 667 bits (1720), Expect = 2.000e-235
Identity = 367/435 (84.37%), Postives = 376/435 (86.44%), Query Frame = 1 
Query:    1 PSPKRGSKDSERKASFSSCEPETPKRGRSPSVAAAGLTLLPPLSCDEAVS-EFEAKARRRSAVRNAKTAAELLDSNSSTCCVTPAGGDG--VGDSGGGVDGRWRKLQARGGGGSAGPPRLKLSVESAVAAAGEDDEVLLSPCCHGPVDLPAFCASPVLVPSSGLRSGXXXXXXXXRPLRGGAEENVLTSSVDSAWSMGSIDETAAREPSNTRHNDRASGSDPVARMLLCQSDDYDVAGVGSGVAPLHGPGXXXXXXXXXXXXSDSPALSRMTSAPSFVQHXXXXXXXRLHQPSPTAGTTVTFSTLTPKRKGDSPFSSERDASGCDHIAAAVEGEKRGKDAALLPSPRRDGGGGALPPALVRPVTASPRAFSVASAAGGGSAARDLREAGARGSDFGAKIGGEGGGRGPLLSPVAFRLHCPGDLEE*SEREPDVDR 1296
            PSPKR S DSERKA FSSCE ETPKRGRSPSVAAAGLTLLPP+SCDEAVS EFEAKARRRSAVRNAKTAAEL DSNSSTCCVTPAGGDG  VGDSGG V GRWRKLQARGGGGSAGPPRLKLSVESAVAAAGEDDEVLLSPCCHGPVDLPAFCASP+LVPSSG+RSG        RPLRGGAEENVLTSSVDSAWSMGSIDETAAREPSNTR+NDRASG DPVARMLL QSDDYDV GVG GV P HGP             SDSP LSRM SAPSFVQH       RLHQPSPTAGTTVTFSTLTPKRKGDSPFS ERDASGC ++A A EG++ GKDAALLPSPRRDGGGGALPPALVR  TASPRAFSVASA GGGSAARDLREAGARGSDFGAKIGG GG RG LL+PV FRLHCPGDLEE SEREPDVDR
Sbjct:  225 PSPKRSSNDSERKAPFSSCESETPKRGRSPSVAAAGLTLLPPISCDEAVSWEFEAKARRRSAVRNAKTAAELFDSNSSTCCVTPAGGDGDGVGDSGGSVGGRWRKLQARGGGGSAGPPRLKLSVESAVAAAGEDDEVLLSPCCHGPVDLPAFCASPILVPSSGVRSGGGGGG---RPLRGGAEENVLTSSVDSAWSMGSIDETAAREPSNTRNNDRASGGDPVARMLLSQSDDYDVGGVGFGVTPPHGP-----DGGGSSNASDSPGLSRMKSAPSFVQHYRHYHHRRLHQPSPTAGTTVTFSTLTPKRKGDSPFSFERDASGCGNVAVAAEGDRGGKDAALLPSPRRDGGGGALPPALVRTATASPRAFSVASATGGGSAARDLREAGARGSDFGAKIGGSGG-RGRLLNPVEFRLHCPGDLEEQSEREPDVDR 650
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BLAST of mRNA_Ecto-sp13_S_contig14853.3698.1 vs. uniprot
Match: A0A6H5JPD1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPD1_9PHAE)

HSP 1 Score: 595 bits (1535), Expect = 9.360e-208
Identity = 337/399 (84.46%), Postives = 352/399 (88.22%), Query Frame = 1 
Query:    1 PSPKRGSKDSERKASFSSCEPETPKRGRSPSVAAAGLTLLPPLSCDEAVS-EFEAKARRRSAVRNAKTAAELLDSNSSTCCVTPAGGDGVGDSGGGVDGRWRKLQARGGGGSAGPPRLKLSVESAVAAAGEDDEVLLSPCCHGPVDLPAFCASPVLVPSSGLRSGXXXXXXXXRPLRGGAEENVLTSSVDSAWSMGSIDETAAREPSNTRHNDRASGSDPVARMLLCQSDDYDVAGVGSGVAPLHGPGXXXXXXXXXXXXSDSPALSRMTSAPSFVQHXXXXXXXRLHQPSPTAGTTVTFSTLTPKRKGDSPFSSERDASGCDHIAAAVEGEKRGKDAALLPSPRRDGGGGALPPALVRPVTASPRAFSVASAAGGGSAARDLREAGARGSDFGAKIGG 1194
            PSPKRGS DSERKASFSSC  ETPKRGRSPSV AAGLT LPP+SCDEA+S EFEA+ARRRSAVR +KTA ELLDSNSSTCCVTPAGGD V  SGG +DGRWRKLQARGGGG AGPPRLKLSVESAV AAGEDDEVLLSPCCHGPVD+PAFC SPVLV SSG+R+GXXXXXXXXRPLRGG EE+VLTSSVDSAWS+GSIDETAAREPS TRHNDRASGSDPVAR LLCQ DDYDV GVG GV P HGPG    XXX     SDSP LSRMTSAPSFVQH       RLHQPSPTAGTTVTFSTLTPKR+GDSPFSSERDASGC ++A A EG++ GKDAALLPSPRRDGGGGALPPALVR VTASPRAFSVASA GGGSAARDLREAGARGSDFGAKIGG
Sbjct:  223 PSPKRGSNDSERKASFSSCGSETPKRGRSPSVVAAGLTPLPPVSCDEALSWEFEARARRRSAVRKSKTATELLDSNSSTCCVTPAGGDDVSHSGGSMDGRWRKLQARGGGGPAGPPRLKLSVESAVVAAGEDDEVLLSPCCHGPVDVPAFCTSPVLVASSGVRNGXXXXXXXXRPLRGGPEEDVLTSSVDSAWSIGSIDETAAREPSCTRHNDRASGSDPVARTLLCQPDDYDVTGVGFGVTPPHGPGGGSSXXXNA---SDSPGLSRMTSAPSFVQHRQHHQHRRLHQPSPTAGTTVTFSTLTPKRRGDSPFSSERDASGCGNVAVAAEGDRGGKDAALLPSPRRDGGGGALPPALVRRVTASPRAFSVASA-GGGSAARDLREAGARGSDFGAKIGG 617
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14853.3698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAV7_ECTSI2.000e-23584.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPD1_9PHAE9.360e-20884.46Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14853contigEcto-sp13_S_contig14853:2..2854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1296
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_006250.1
Cds size690
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462792.3719287-UTR-Ecto-sp13_S_contig14853:1..1601681462792.3719287-UTR-Ecto-sp13_S_contig14853:1..160Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14853 2..160 +
1681462792.3836873-UTR-Ecto-sp13_S_contig14853:971..13911681462792.3836873-UTR-Ecto-sp13_S_contig14853:971..1391Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14853 972..1391 +
1681462792.4224615-UTR-Ecto-sp13_S_contig14853:2827..28541681462792.4224615-UTR-Ecto-sp13_S_contig14853:2827..2854Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14853 2828..2854 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462792.3982873-CDS-Ecto-sp13_S_contig14853:1391..14241681462792.3982873-CDS-Ecto-sp13_S_contig14853:1391..1424Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14853 1392..1424 +
1681462792.4095328-CDS-Ecto-sp13_S_contig14853:2170..28271681462792.4095328-CDS-Ecto-sp13_S_contig14853:2170..2827Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14853 2171..2827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14853.3698.1prot_Ecto-sp13_S_contig14853.3698.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14853 1392..2827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14853.3698.1

>prot_Ecto-sp13_S_contig14853.3698.1 ID=prot_Ecto-sp13_S_contig14853.3698.1|Name=mRNA_Ecto-sp13_S_contig14853.3698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=230bp
MGSIDETAAREPSNTRHNDRASGSDPVARMLLCQSDDYDVAGVGSGVAPL
HGPGGGGGGGGGGSNASDSPALSRMTSAPSFVQHHRHHHHRRLHQPSPTA
GTTVTFSTLTPKRKGDSPFSSERDASGCDHIAAAVEGEKRGKDAALLPSP
RRDGGGGALPPALVRPVTASPRAFSVASAAGGGSAARDLREAGARGSDFG
AKIGGEGGGRGPLLSPVAFRLHCPGDLEE*
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mRNA from alignment at Ecto-sp13_S_contig14853:2..2854+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14853.3698.1 ID=mRNA_Ecto-sp13_S_contig14853.3698.1|Name=mRNA_Ecto-sp13_S_contig14853.3698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2853bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14853:2..2854+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTTCCCCGAAGCGCGGCAGCAAGGATTCGGAGAGAAAGGCCTCGTTCTC
GTCTTGCGAGCCGGAAACGCCCAAGCGCGGCCGGTCGCCGTCGGTGGCGG
CGGCGGGGCTGACGCTGCTGCCCCCGTTAAGCTGTGACGAGGCGGTTTCG
GAGTTCGAGGTGAGCTGGGCACATGCTTCACCGTACCGCTCGGTTACCTT
CTGAGGTTTGCTGAAAGCCTGAATGGCTTAGAATTTGGGGGCTTCCGTGT
GCGTGTGTGTGTGTGTGTGTGTTTTTTTTTTTTCCCTATTTTGTCTTCAC
TTCAAATTAGCGCTCAGCGCTTGTGCCGCCTACTCCATCCCGTGGTGTGT
AGGTGCGTAGTTTTCTGGCATCTGTGGTGACAGATTATTTTTCCGCGTAC
ACTAGCATCGGTGCTTGGTGGCGGGGACGCGTTGCGCGGAAGCGGTGCAC
GCCTGAACCAGATATCATCCTTCGTGTAACGTTTCAATCTTTTCGCGTGA
TGGATGGGAAAGAACAAACGAAACTGCGTCTCTCTCTACGAGTTGTGGCG
CGACGGCGTTCCCCAAGGGGTGCGAAAAGTGAACGGGATGGTCCATCCGA
TCCTCACCTGGAATCAAGGCGCTCGGGAGACATGTAGAGTTTTGTCGCCC
TCAATTAGCACAGCATGTACACCGTAGTTACCAGGTATTCCCCCCTTGCA
CCCACCCCCGATCACCGCCACCTTACCGTGCGGACTAATTCCATTACCCT
GGCATCGACGTTCACCGTAGTTTCACCCCCACCCACACACTCCATCCAGT
GTGCGAACTAATTCATTTACCGCTATGATAGCAGCCGATGATTACCATTG
TTTCATACCCCATTACCCCCCACCCATTGTGCGAGCTAGTTCCCGTACAG
CTACATATAGCACCCGACGCTTTACCATTTTGTTTCACCGACCTCCCCCA
TTTCATTGCACTGGCGGCAGGCAAAGGCGAGACGTCGATCCGCCGTCCGG
AACGCTAAGACAGCCGCGGAGCTGTTAGACAGCAATAGCAGCACCTGCTG
CGTCACGCCCGCTGGAGGCGACGGCGTCGGCGACAGCGGCGGTGGCGTTG
ACGGGCGGTGGAGGAAACTCCAGGCCCGCGGCGGCGGAGGTTCCGCGGGG
CCCCCGCGCCTGAAGTTGTCGGTCGAGAGCGCGGTGGCGGCGGCGGGGGA
GGACGACGAGGTGCTGCTGTCGCCGTGCTGCCACGGCCCGGTCGACCTCC
CCGCCTTCTGCGCCTCCCCGGTGCTGGTGCCCTCTTCGGGGTTGAGGAGC
GGCGGCGGCGGCGGCGGCGGGGGCGGCCGGCCTCTCCGGGGTGGTGCTGA
GGAGAACGTGCTGACGTCGTCTGTGGACAGCGCGTGGTCCATGGGGTCGA
TCGACGAGACTGCTGCCAGAGAGGTGAAGGGCAGCGACGTGTTGGTGGAG
ATGGGTGGTTGCGTGGGAAGGCGCTCGTGCTGGTGTTTTAGCTTGCAACG
CGTGGGAGTAGTCGCCAGGGTGGCCAAAGCTGTGTCTTACGGTTTTCAGG
ATTTTTTTTCTTTGTTTACTTCGTCGAAGTATCTTGTTTTTTCTTACCGA
AACACAACCAACCCATCTCTTGCTCATAGATCTACGGGATACTCTTGGTG
GAAAGTGACGTGCTGCTCGATAACCGCTCGGCATCTTGTTCCGTTCTTCT
ACATGTACATATGCAAAGTCGGAAAGGTCTTGTTCTGGTGATCGCGGCCG
CCTTGGGTAGGCACCTCCATCGAGAAGGAACGCGGGTCGAGAACGAAACG
ACGAAATACAAAGACAGATGCCCCCCCCGAACCAAGCGCAGCGTGCTAGA
TCGAAACCCGTCAGAAAGGGGCCTAGCCCACTTGTCGAAGAAACGAAAAC
AAGGAGGCAAGAATGCTATGCTTGGCTCACCTTTGAACGTTTGAGAAAAA
AAGAGCGGCCAATCCACTCGTCGCATTGTCAGTCACCGCTCCATCTCATG
GACTCGGGGCACAAACGGTTGGAATCCTCTCCCCCGCACGAAGATGGATA
ACGGATAGGCAAAAGGCAGGCAGGGGTGCGACAAGAGGGAGCTGTTGTTG
ACTTTTCCTGCGCTGCGCTCACCGCTTGCCGTTCCACGGATGGACTTGTT
CTTGTAACCTCCGCCGCAGCCGAGCAACACGAGGCACAACGATAGGGCTT
CGGGGAGCGACCCCGTCGCGCGGATGCTCCTCTGCCAGTCGGACGACTAC
GACGTGGCGGGTGTCGGATCCGGCGTCGCCCCTCTCCACGGCCCCGGCGG
CGGCGGCGGCGGCGGCGGCGGCGGCAGCAACGCTAGCGACAGCCCAGCCC
TCTCGCGGATGACCTCGGCTCCGAGTTTCGTCCAACACCATCGCCACCAC
CACCACCGTAGGCTACACCAACCGTCCCCTACCGCCGGCACGACGGTCAC
GTTCAGCACCCTGACTCCCAAGAGGAAGGGCGACTCGCCCTTCTCCTCCG
AACGCGACGCTTCCGGCTGCGATCACATTGCCGCTGCCGTCGAAGGCGAG
AAAAGAGGAAAGGATGCGGCGCTTCTCCCATCCCCCCGCAGGGACGGCGG
TGGTGGTGCTCTTCCTCCCGCCCTCGTCAGGCCAGTCACAGCGTCCCCTC
GCGCGTTCTCCGTTGCCAGCGCCGCCGGGGGAGGTTCCGCGGCGAGGGAT
CTCAGGGAGGCGGGGGCCCGTGGAAGCGATTTTGGGGCGAAGATCGGCGG
CGAGGGGGGGGGGCGCGGCCCTTTGTTGAGTCCCGTGGCGTTTCGGCTCC
ACTGCCCGGGGGATCTGGAAGAGTAATCTGAGCGTGAACCCGATGTTGAT
AGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14853:2..2854+

>mRNA_Ecto-sp13_S_contig14853.3698.1 ID=mRNA_Ecto-sp13_S_contig14853.3698.1|Name=mRNA_Ecto-sp13_S_contig14853.3698.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14853:2..2854+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGTCGATCGACGAGACTGCTGCCAGAGAGCCGAGCAACACGAGGCA
CAACGATAGGGCTTCGGGGAGCGACCCCGTCGCGCGGATGCTCCTCTGCC
AGTCGGACGACTACGACGTGGCGGGTGTCGGATCCGGCGTCGCCCCTCTC
CACGGCCCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCAACGCTAG
CGACAGCCCAGCCCTCTCGCGGATGACCTCGGCTCCGAGTTTCGTCCAAC
ACCATCGCCACCACCACCACCGTAGGCTACACCAACCGTCCCCTACCGCC
GGCACGACGGTCACGTTCAGCACCCTGACTCCCAAGAGGAAGGGCGACTC
GCCCTTCTCCTCCGAACGCGACGCTTCCGGCTGCGATCACATTGCCGCTG
CCGTCGAAGGCGAGAAAAGAGGAAAGGATGCGGCGCTTCTCCCATCCCCC
CGCAGGGACGGCGGTGGTGGTGCTCTTCCTCCCGCCCTCGTCAGGCCAGT
CACAGCGTCCCCTCGCGCGTTCTCCGTTGCCAGCGCCGCCGGGGGAGGTT
CCGCGGCGAGGGATCTCAGGGAGGCGGGGGCCCGTGGAAGCGATTTTGGG
GCGAAGATCGGCGGCGAGGGGGGGGGGCGCGGCCCTTTGTTGAGTCCCGT
GGCGTTTCGGCTCCACTGCCCGGGGGATCTGGAAGAGTAA
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