mRNA_Ecto-sp13_S_contig14842.3694.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14842.3694.1
Unique NamemRNA_Ecto-sp13_S_contig14842.3694.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14842.3694.1 vs. uniprot
Match: D8LS44_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS44_ECTSI)

HSP 1 Score: 708 bits (1827), Expect = 9.870e-245
Identity = 492/671 (73.32%), Postives = 509/671 (75.86%), Query Frame = 1 
Query:    1 VLMGCPFGPAIDVWGVGVLLLELLLGRPLFDTAGSRVALKYPTILRVHRSPHPRSRLRSRLLACPPIYSLLMRQAGIPRANSGDEHMRMGCCSCCWIGVRRSPDEDPDVSSCDGCCALRCRRLSDMRGDGSVTPLAAAAAGRRGLGPPAGSTGCSSSEACISRLIGAPLPXXXXXXXXXXXXXXXXXXXXXXXEHHLRHRQRSNQPRLARPKPRRPPSATSAVAGQKNERLLSLISGLLRYDPDERLTPAQALAHPFFGETLPFAVLPPTAVAPGLGQTSGGGGRGAAAARCRTAEPTALAKGRHHGDRRQXXXXXXXXXXXXXXXXXXXXXXXX--ARRRSLPDGSCGVDNSWQRARHEEATTSTCRSGS-------------VDAGAARASPARVVSTTTPSRRHDDV-AGSRSNGTSSVPPRPTGNSSGAANSREAAEPTAQLQQLAEMAEVIVKDNSRYSRDRAGGIGNXXXXXXXXXXXQAP----RRNRFLNVERFASLKRESLPAEPEVPAVSGTPTEEQRHHAQPPPAGATSGRRRPNRFLTPATLAILKPSLGVTRRQNADDIAAAAAEGAWATSKAAT-SEA-EVDKAGANSGLCAQRTASASTTKATSPPLAHQDPSSMEKVQRLPWETPGEAAGREPVVVARREPEGGGVKPAAAPNEQ 1947
            VLMGCPFGPA+DVWGVGV+LLELLLGRPLFDTAGSRVAL + T+  +   P P  R R            +  QAGIP ANSGDEHMRMGCCSCCWIGVRRSPDEDPDVSSCDGCCALRCRRLSDMRGDGS  PLAAAAAGRRGLGPPAGSTGCSSSEACISRLIGAP  XXXXXXXXXXXXXXXXXXXXXXX     HRQ SN PRLARPKPRRPPSAT+AVAGQKN+RLLSLISGLLRYDPDERLTPAQALAHPFFGETLPF VLPPTAVAPGLGQTSG                              XXXXXXXXXXXXXXXXXXXXXXXX  ARRRSLPDG+  VDN WQRARHEEATTST RSG              VDAGAARASPARVVS  TPSRRHDD  AGSR+NGTS VPPRPTG+SSGA+NS+E AEPTAQLQQLAEMAEVI+KDNSRYSR RAGG   XXXXXXXXXXX       RRNRFLN ERFASLKRES PAEPEVPAVSGTPTEEQR          T GRRRPNRFLTPATLAILKP LGVTRRQ+AD                   SEA EVDKAG  SGLCAQRT             AHQDPSSMEKV+RL WETPGEAA RE VV A REPE G VKPAAAP+ Q
Sbjct:  137 VLMGCPFGPAVDVWGVGVILLELLLGRPLFDTAGSRVALVHQTVCAL--GPMPLRRFRVGHYFSEYFPKGMSLQAGIPTANSGDEHMRMGCCSCCWIGVRRSPDEDPDVSSCDGCCALRCRRLSDMRGDGSAAPLAAAAAGRRGLGPPAGSTGCSSSEACISRLIGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRQHSNHPRLARPKPRRPPSATTAVAGQKNKRLLSLISGLLRYDPDERLTPAQALAHPFFGETLPFEVLPPTAVAPGLGQTSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPARRRSLPDGNGVVDNGWQRARHEEATTSTHRSGRTTTKSPEISSSGRVDAGAARASPARVVSMATPSRRHDDNDAGSRTNGTSDVPPRPTGSSSGASNSKEEAEPTAQLQQLAEMAEVIIKDNSRYSRGRAGGTXXXXXXXXXXXXXXXXXXXXRRNRFLNAERFASLKRESSPAEPEVPAVSGTPTEEQRXXXXXXXXXXTRGRRRPNRFLTPATLAILKPDLGVTRRQHADXXXXXXXXXXXXXXXXXXXSEAREVDKAGGYSGLCAQRTXXXXXXXXXXXXAAHQDPSSMEKVKRLSWETPGEAARREAVVAATREPEDGRVKPAAAPSVQ 805
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BLAST of mRNA_Ecto-sp13_S_contig14842.3694.1 vs. uniprot
Match: A0A835YK57_9STRA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK57_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.970e-6
Identity = 28/51 (54.90%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    1 VLMGCPFGPAIDVWGVGVLLLELLLGRPLFDTAGSRVALKYPTILRVHRSP 153
            VL GCPFG   D++ +GVLLLE +LGRPLF TA SRV L   T   +  +P
Sbjct:   21 VLHGCPFGTPADMYSLGVLLLEAVLGRPLFRTASSRVGLAIQTACALGAAP 71
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14842.3694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LS44_ECTSI9.870e-24573.32N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A835YK57_9STRA1.970e-654.90Protein kinase domain-containing protein (Fragment... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14842contigEcto-sp13_S_contig14842:1551..4318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1947
Hectar predicted targeting categorysignal peptide
Exons3
Cds size1941
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462792.1562703-UTR-Ecto-sp13_S_contig14842:1550..15561681462792.1562703-UTR-Ecto-sp13_S_contig14842:1550..1556Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14842 1551..1556 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462792.169094-CDS-Ecto-sp13_S_contig14842:1556..16671681462792.169094-CDS-Ecto-sp13_S_contig14842:1556..1667Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14842 1557..1667 +
1681462792.181412-CDS-Ecto-sp13_S_contig14842:2322..23391681462792.181412-CDS-Ecto-sp13_S_contig14842:2322..2339Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14842 2323..2339 +
1681462792.1898034-CDS-Ecto-sp13_S_contig14842:2505..43181681462792.1898034-CDS-Ecto-sp13_S_contig14842:2505..4318Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14842 2506..4318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14842.3694.1prot_Ecto-sp13_S_contig14842.3694.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14842 1557..4318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14842.3694.1

>prot_Ecto-sp13_S_contig14842.3694.1 ID=prot_Ecto-sp13_S_contig14842.3694.1|Name=mRNA_Ecto-sp13_S_contig14842.3694.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=647bp
MGCPFGPAIDVWGVGVLLLELLLGRPLFDTAGSRVALKYPTILRVHRSPH
PRSRLRSRLLACPPIYSLLMRQAGIPRANSGDEHMRMGCCSCCWIGVRRS
PDEDPDVSSCDGCCALRCRRLSDMRGDGSVTPLAAAAAGRRGLGPPAGST
GCSSSEACISRLIGAPLPPPPQQQQAPAAAGHAAAAALSASEHHLRHRQR
SNQPRLARPKPRRPPSATSAVAGQKNERLLSLISGLLRYDPDERLTPAQA
LAHPFFGETLPFAVLPPTAVAPGLGQTSGGGGRGAAAARCRTAEPTALAK
GRHHGDRRQPPEPQPTGAAASLVAASQRQEEEPARRRSLPDGSCGVDNSW
QRARHEEATTSTCRSGSVDAGAARASPARVVSTTTPSRRHDDVAGSRSNG
TSSVPPRPTGNSSGAANSREAAEPTAQLQQLAEMAEVIVKDNSRYSRDRA
GGIGNGNGNGSAPASAQAPRRNRFLNVERFASLKRESLPAEPEVPAVSGT
PTEEQRHHAQPPPAGATSGRRRPNRFLTPATLAILKPSLGVTRRQNADDI
AAAAAEGAWATSKAATSEAEVDKAGANSGLCAQRTASASTTKATSPPLAH
QDPSSMEKVQRLPWETPGEAAGREPVVVARREPEGGGVKPAAAPNEQ
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mRNA from alignment at Ecto-sp13_S_contig14842:1551..4318+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14842.3694.1 ID=mRNA_Ecto-sp13_S_contig14842.3694.1|Name=mRNA_Ecto-sp13_S_contig14842.3694.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2768bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14842:1551..4318+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCTCATGGGGTGTCCTTTTGGACCAGCTATTGATGTTTGGGGCGTGGG
TGTTCTTCTTCTGGAGCTCCTACTAGGCCGGCCTCTTTTCGACACCGCCG
GCTCGCGCGTGGCCTTGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTTCCTGCTGTTCTTGCGCCTTCGATATTTAACGCGAGAAG
ACTGCAGCACTCTCTTCCCTCACAGTGTACACACACGAACTAATAGCGCT
TTCCACCAAAACAACATGCAAACGGAAGCTCGAGAAAGCTTACGCCGGGA
TTCGAACCCCTGCCCCTGGTCGCGAAAGGGTTGCGAGGGGACCAACTATA
GTACCGGGGCGACCGGCCTTGTACCGAATTCAAATCGACTTAGTACTTGA
TACCACGTTGTTGAGACCCGTTATTTTACTTATTTGTTGCCAACATGCGT
GAAACACGAATCGAAAACACAGAAATACCCGACAATATTGTACGCACGGG
CGGTGTGTGTATGCTTTACAGTTACACGCAGAAATTGCTGTACAGAGCGC
AACAGATTAAACGCGCGAGAATTCATACAAGGAAAACAATAATTTAGCAT
GGCAAAGCCGCAATAGACGATACCGTAGCGTCCCTCGTTTGGCTGTCTGT
TTAAGGCGTGTACATAGAAGCCCTCACCCCCGTTCCCGCTTGCGTTCTCG
CTTGCTTGCTTGCCCCCCTATTTACTCACTTCTTATGCGGCAGGCAGGAA
TACCCAGAGCTAACTCCGGAGACGAACACATGAGGATGGGCTGCTGCTCT
TGCTGCTGGATAGGAGTCAGGCGTTCACCGGACGAAGACCCCGACGTTAG
CTCCTGCGACGGCTGTTGCGCTCTAAGATGTCGTCGTCTGTCCGACATGC
GTGGCGATGGATCGGTGACACCTCTTGCAGCAGCGGCCGCCGGGCGGCGA
GGGCTCGGCCCCCCCGCGGGGTCCACCGGGTGTTCAAGCTCGGAGGCCTG
CATTTCCCGGCTCATCGGCGCGCCTCTGCCACCACCACCACAACAACAAC
AAGCCCCTGCTGCCGCGGGGCATGCAGCGGCAGCCGCCCTCAGCGCGTCC
GAGCACCACCTTCGCCATCGCCAACGCAGCAACCAACCCCGTCTTGCCAG
ACCGAAACCCCGCCGTCCCCCCAGTGCGACATCCGCCGTCGCCGGGCAGA
AGAACGAGCGCCTGCTGAGCCTCATCAGCGGGCTGCTTCGCTACGACCCC
GACGAGCGGCTGACCCCGGCACAGGCACTGGCCCACCCGTTCTTCGGCGA
GACGCTCCCCTTCGCAGTCCTGCCGCCGACGGCCGTCGCACCTGGCCTTG
GCCAGACTTCCGGAGGCGGGGGGCGGGGCGCCGCGGCTGCGAGATGCCGA
ACGGCGGAGCCTACCGCACTGGCTAAGGGCAGGCACCACGGAGACCGACG
ACAACCCCCAGAGCCTCAGCCAACGGGTGCTGCCGCAAGCCTCGTCGCCG
CTTCGCAGCGGCAAGAAGAAGAACCGGCGCGGAGAAGAAGCTTGCCCGAC
GGCAGCTGCGGCGTTGACAACTCGTGGCAGCGGGCGCGGCACGAGGAGGC
GACGACATCGACGTGCCGTAGCGGAAGCGTCGACGCTGGCGCCGCCCGCG
CCTCTCCCGCCCGTGTAGTTTCGACGACGACGCCTTCCCGTCGTCACGAC
GACGTCGCCGGTTCTCGTAGCAACGGCACCTCTTCTGTGCCACCACGCCC
GACTGGGAACTCCTCCGGCGCTGCTAATAGCAGAGAAGCGGCGGAACCGA
CCGCGCAGCTCCAACAGCTAGCAGAAATGGCAGAGGTAATCGTCAAGGAT
AATTCTCGTTACAGCCGCGACCGAGCGGGCGGCATCGGAAACGGCAACGG
CAACGGCAGTGCGCCGGCGTCGGCGCAGGCGCCACGTCGAAACCGCTTCC
TGAACGTTGAACGCTTCGCCAGCCTAAAGCGCGAAAGTTTGCCGGCCGAA
CCCGAGGTTCCCGCAGTGTCTGGAACGCCGACGGAGGAGCAGCGGCATCA
CGCCCAGCCGCCGCCAGCTGGTGCGACGAGCGGACGACGAAGACCCAACC
GCTTTCTCACTCCCGCCACTCTCGCCATCCTTAAGCCCAGCCTGGGGGTT
ACAAGAAGACAAAACGCTGACGATATAGCGGCGGCGGCGGCGGAGGGGGC
GTGGGCAACTTCAAAGGCGGCAACATCAGAGGCGGAGGTTGACAAGGCGG
GTGCAAATTCAGGCCTGTGCGCGCAGCGAACAGCTTCGGCGTCGACAACC
AAGGCAACATCGCCGCCGCTGGCACACCAGGATCCCTCGAGCATGGAGAA
GGTGCAACGCCTTCCGTGGGAAACCCCGGGAGAGGCGGCGGGAAGAGAAC
CAGTGGTGGTGGCTAGGCGGGAGCCAGAGGGCGGCGGGGTAAAGCCCGCC
GCCGCTCCAAACGAACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14842:1551..4318+

>mRNA_Ecto-sp13_S_contig14842.3694.1 ID=mRNA_Ecto-sp13_S_contig14842.3694.1|Name=mRNA_Ecto-sp13_S_contig14842.3694.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1941bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14842:1551..4318+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGTGTCCTTTTGGACCAGCTATTGATGTTTGGGGCGTGGGTGTTCT
TCTTCTGGAGCTCCTACTAGGCCGGCCTCTTTTCGACACCGCCGGCTCGC
GCGTGGCCTTGAAATACCCGACAATATTGCGTGTACATAGAAGCCCTCAC
CCCCGTTCCCGCTTGCGTTCTCGCTTGCTTGCTTGCCCCCCTATTTACTC
ACTTCTTATGCGGCAGGCAGGAATACCCAGAGCTAACTCCGGAGACGAAC
ACATGAGGATGGGCTGCTGCTCTTGCTGCTGGATAGGAGTCAGGCGTTCA
CCGGACGAAGACCCCGACGTTAGCTCCTGCGACGGCTGTTGCGCTCTAAG
ATGTCGTCGTCTGTCCGACATGCGTGGCGATGGATCGGTGACACCTCTTG
CAGCAGCGGCCGCCGGGCGGCGAGGGCTCGGCCCCCCCGCGGGGTCCACC
GGGTGTTCAAGCTCGGAGGCCTGCATTTCCCGGCTCATCGGCGCGCCTCT
GCCACCACCACCACAACAACAACAAGCCCCTGCTGCCGCGGGGCATGCAG
CGGCAGCCGCCCTCAGCGCGTCCGAGCACCACCTTCGCCATCGCCAACGC
AGCAACCAACCCCGTCTTGCCAGACCGAAACCCCGCCGTCCCCCCAGTGC
GACATCCGCCGTCGCCGGGCAGAAGAACGAGCGCCTGCTGAGCCTCATCA
GCGGGCTGCTTCGCTACGACCCCGACGAGCGGCTGACCCCGGCACAGGCA
CTGGCCCACCCGTTCTTCGGCGAGACGCTCCCCTTCGCAGTCCTGCCGCC
GACGGCCGTCGCACCTGGCCTTGGCCAGACTTCCGGAGGCGGGGGGCGGG
GCGCCGCGGCTGCGAGATGCCGAACGGCGGAGCCTACCGCACTGGCTAAG
GGCAGGCACCACGGAGACCGACGACAACCCCCAGAGCCTCAGCCAACGGG
TGCTGCCGCAAGCCTCGTCGCCGCTTCGCAGCGGCAAGAAGAAGAACCGG
CGCGGAGAAGAAGCTTGCCCGACGGCAGCTGCGGCGTTGACAACTCGTGG
CAGCGGGCGCGGCACGAGGAGGCGACGACATCGACGTGCCGTAGCGGAAG
CGTCGACGCTGGCGCCGCCCGCGCCTCTCCCGCCCGTGTAGTTTCGACGA
CGACGCCTTCCCGTCGTCACGACGACGTCGCCGGTTCTCGTAGCAACGGC
ACCTCTTCTGTGCCACCACGCCCGACTGGGAACTCCTCCGGCGCTGCTAA
TAGCAGAGAAGCGGCGGAACCGACCGCGCAGCTCCAACAGCTAGCAGAAA
TGGCAGAGGTAATCGTCAAGGATAATTCTCGTTACAGCCGCGACCGAGCG
GGCGGCATCGGAAACGGCAACGGCAACGGCAGTGCGCCGGCGTCGGCGCA
GGCGCCACGTCGAAACCGCTTCCTGAACGTTGAACGCTTCGCCAGCCTAA
AGCGCGAAAGTTTGCCGGCCGAACCCGAGGTTCCCGCAGTGTCTGGAACG
CCGACGGAGGAGCAGCGGCATCACGCCCAGCCGCCGCCAGCTGGTGCGAC
GAGCGGACGACGAAGACCCAACCGCTTTCTCACTCCCGCCACTCTCGCCA
TCCTTAAGCCCAGCCTGGGGGTTACAAGAAGACAAAACGCTGACGATATA
GCGGCGGCGGCGGCGGAGGGGGCGTGGGCAACTTCAAAGGCGGCAACATC
AGAGGCGGAGGTTGACAAGGCGGGTGCAAATTCAGGCCTGTGCGCGCAGC
GAACAGCTTCGGCGTCGACAACCAAGGCAACATCGCCGCCGCTGGCACAC
CAGGATCCCTCGAGCATGGAGAAGGTGCAACGCCTTCCGTGGGAAACCCC
GGGAGAGGCGGCGGGAAGAGAACCAGTGGTGGTGGCTAGGCGGGAGCCAG
AGGGCGGCGGGGTAAAGCCCGCCGCCGCTCCAAACGAACAG
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