mRNA_Ecto-sp13_S_contig14842.3693.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14842.3693.1
Unique NamemRNA_Ecto-sp13_S_contig14842.3693.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14842.3693.1 vs. uniprot
Match: A0A6H5KT02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT02_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 1.250e-74
Identity = 150/184 (81.52%), Postives = 153/184 (83.15%), Query Frame = 1
Query:    1 VVRLLDALTYQGHYCLVTELFSGTLSLSRAEGRAGQRERTSVPTAAATAAEAPALXXXXXXXXXXXXXX-----SSTRSYSSAVEKWSVARLFVDKGTRESPGGFQRAGAPAEPSGRLGWGSVAGVGPSAPCGGGLEDSVSSNGSSSIGRKKGERSTGDGGAAGFPSGGGGCPVVVIRHVALHL 537
            VVRLLDALTYQGHYCLVTELFSGTLSL  AEG AGQRERTSVP            XXXXXXXXXXXXXX     SSTRSYSSAVEKWSVARLFVD+G RESPGGFQR GAPAEPSGRLGW S+AGVG S+P GGGLEDSVSSNGSS IGRKKGER  GDGGAAGF SGGGGCPV VIRHVAL L
Sbjct:   30 VVRLLDALTYQGHYCLVTELFSGTLSLLGAEGGAGQRERTSVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHNSSTRSYSSAVEKWSVARLFVDQGARESPGGFQRVGAPAEPSGRLGWSSLAGVGASSPSGGGLEDSVSSNGSSGIGRKKGERGAGDGGAAGFSSGGGGCPVAVIRHVALQL 213          
BLAST of mRNA_Ecto-sp13_S_contig14842.3693.1 vs. uniprot
Match: A0A7S2ST04_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST04_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.250e-15
Identity = 51/113 (45.13%), Postives = 62/113 (54.87%), Query Frame = 1
Query:  502 PVVVIRHVALHLVSALLLLHSHGLIHADVKPENVLLRMEGRRQEGEGEGEACRRGRPLCLADFVSGRAGGGGGGVVERLTVKLGDLGSAIHRSETYLFYGDFEIQTLAYRAPE 840
            P+ V+R VAL L+SALL L   G+IHAD+KPENVLL  +                 P   A F        G  +     VKL D G+AIHR+E  L++  FEIQTLAYRAPE
Sbjct:   11 PLGVVRRVALDLISALLCLGHQGIIHADIKPENVLLSTDPE--------------PPATEASF--------GQLMSPPFRVKLADFGNAIHRAEAPLYHATFEIQTLAYRAPE 101          
BLAST of mRNA_Ecto-sp13_S_contig14842.3693.1 vs. uniprot
Match: A0A4D9CR04_9STRA (Protein kinase domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CR04_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.160e-12
Identity = 58/133 (43.61%), Postives = 67/133 (50.38%), Query Frame = 1
Query:  460 DGGAAGFPSGGGGCPVVVIRHVALHLVSALLLLHSHGLIHADVKPENVLLRMEGRRQEGEGEGEACRRGRPLCLADFVSGRAGGGGGGVVERLTVKLGDLGSAIHRSETYLFYGDFEIQTLAYRAPEAR--GC 852
            DG   G    G G  V ++R  ALHLV ALLLLH+  +IHAD+KPENVLL        G   G+   R                GG G   RLT    DLG+AI   E  L+  D+EIQTL YRAPE    GC
Sbjct:  254 DGRRDGGRGAGPGLTVPLVREAALHLVKALLLLHNQDVIHADLKPENVLLAGPMGGALGPERGQHSPR----------------GGWGQHVRLT----DLGNAIKSREVKLYRDDYEIQTLGYRAPEVLVGGC 366          
BLAST of mRNA_Ecto-sp13_S_contig14842.3693.1 vs. uniprot
Match: D8LS44_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS44_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.460e-10
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 3
Query:  747 VGRLGQRHPSQ*DVPVLRRLRDTDARLQGTRGKGVYLV 860
            VGRLGQRHPSQ DVPVLRRL D DARLQGTRGKGVYLV
Sbjct:   98 VGRLGQRHPSQRDVPVLRRLPDADARLQGTRGKGVYLV 135          
BLAST of mRNA_Ecto-sp13_S_contig14842.3693.1 vs. uniprot
Match: A0A835ZFW0_9STRA (Protein kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW0_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.180e-9
Identity = 47/119 (39.50%), Postives = 62/119 (52.10%), Query Frame = 1
Query:  502 PVVVIRHVALHLVSALLLLHSHGLIHADVKPENVLLRMEGRRQEGEGEGEACRRGRPLCLADFVSGRAGGGGGGVVERLTVKLGDLGSAIHRSETYLFYGDFEIQT-LAYRAPEA-RGC 852
            PV  +R +A+ L+S L+LL   G++H ++KP+NVLL         EG      R   L   D          G V+  L V L   G A+HRSE  L Y +F++QT LAYRAPE   GC
Sbjct:  189 PVPAVRALAMRLLSGLVLLEQEGIVHGNLKPDNVLLSTAK-----EGSAATATRLDALLTRDRR--------GAVLGELLVTLCGFGHALHRSEARLHYENFDVQTTLAYRAPEVLHGC 294          
BLAST of mRNA_Ecto-sp13_S_contig14842.3693.1 vs. uniprot
Match: A0A2P6MPE9_9EUKA (Protein kinase domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MPE9_9EUKA)

HSP 1 Score: 65.1 bits (157), Expect = 4.160e-8
Identity = 39/114 (34.21%), Postives = 61/114 (53.51%), Query Frame = 1
Query:  514 IRHVALHLVSALLLLHSHGLIHADVKPENVLLRMEGR-RQEGEGEGEACRRGRPLCLAD----FVSGRAGGGGGGVVERLTVKLGDLGSAIHRSETYLFYGDFEIQTLAYRAPE 840
            I  + + ++S L +LH+  +IH D+KPEN++ +   R   E   E EA  RG           F S             + +K+ D G+AI RS+++L+Y +FE+Q+L YRAPE
Sbjct:  627 IAKITVQIISCLQMLHAENIIHGDLKPENIIFKHPIRLTSEHIEEHEASFRGMKASTEGPRKKFTS-------------VALKIADFGNAIDRSDSHLYYDNFEVQSLLYRAPE 727          
BLAST of mRNA_Ecto-sp13_S_contig14842.3693.1 vs. uniprot
Match: A0A0H5RBC3_9EUKA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RBC3_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 1.030e-7
Identity = 40/109 (36.70%), Postives = 53/109 (48.62%), Query Frame = 1
Query:  514 IRHVALHLVSALLLLHSHGLIHADVKPENVLLRMEGRRQEGEGEGEACRRGRPLCLADFVSGRAGGGGGGVVERLTVKLGDLGSAIHRSETYLFYGDFEIQTLAYRAPE 840
            +R VA+ LVSAL+ L   GLIHAD+KPEN+LLR         G                               + +KL DLG+++   ET  ++ DF IQ+L YRAPE
Sbjct:  149 LRKVAVQLVSALIHLQKAGLIHADIKPENILLRTPDSDISCSGS------------------------------MAIKLTDLGNSVLSKETCAYWDDFNIQSLFYRAPE 227          
BLAST of mRNA_Ecto-sp13_S_contig14842.3693.1 vs. uniprot
Match: L1JPH2_GUITC (Protein kinase domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JPH2_GUITC)

HSP 1 Score: 56.2 bits (134), Expect = 2.840e-6
Identity = 34/109 (31.19%), Postives = 57/109 (52.29%), Query Frame = 1
Query:  514 IRHVALHLVSALLLLHSHGLIHADVKPENVLLRMEGRRQEGEGEGEACRRGRPLCLADFVSGRAGGGGGGVVERLTVKLGDLGSAIHRSETYLFYGDFEIQTLAYRAPE 840
            ++ ++  L+++L  L S+G++HAD++PENVLLR    ++    E        P  L+                 + VKL D+G++     +  ++ DFE+QTL YRAPE
Sbjct:   28 LQKLSFQLLTSLSFLASNGVVHADIRPENVLLRESPWKKVNGRE-------LPKSLS-----------------IKVKLADMGNSFRMKNSSAYHDDFELQTLYYRAPE 112          
BLAST of mRNA_Ecto-sp13_S_contig14842.3693.1 vs. uniprot
Match: A0A2P4YHK0_9STRA (CMGC protein Kinase n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YHK0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.160e-6
Identity = 41/123 (33.33%), Postives = 56/123 (45.53%), Query Frame = 1
Query:  505 VVVIRHVALHLVSALLLLHSHGLIHADVKPENVLLRMEGRRQEGEGEGEACRRGRPLCLADFVSGRAGGGGGGVVERLTVKLGDLGSAIHRSETYLFY-----GDFEIQTLAYRAPEARGCTL 858
            +V +R +A+HL  AL  LH  GLIHADVKPENV+       + G G   +       C +                   VKL D G+ +  SE  ++      G F++QT+ YRAPE     L
Sbjct:  165 LVDVRQMAVHLCGALAFLHDQGLIHADVKPENVV-------RSGAGSSTSLSS----CSSP------------------VKLVDFGNCLDASEVAVYAQEQTSGGFDVQTITYRAPEVAAGLL 258          
BLAST of mRNA_Ecto-sp13_S_contig14842.3693.1 vs. uniprot
Match: A0A484ED60_BRELC (Protein kinase domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484ED60_BRELC)

HSP 1 Score: 57.8 bits (138), Expect = 8.410e-6
Identity = 40/120 (33.33%), Postives = 54/120 (45.00%), Query Frame = 1
Query:  514 IRHVALHLVSALLLLHSHGLIHADVKPENVLLRMEGRRQEGEGEGEACRRGRPLCLADFVSGRAGGGGGGVVERLTVKLGDLGSAIHRSETYLFYGD-----FEIQTLAYRAPEARGCTL 858
            +R +A HL  AL  LH  GLIHAD+KPENV+      R   E    +C    PLC +                   +KL D G+ +  +E   + G      F++QT+ YRAPE     L
Sbjct:  183 VRQIAAHLCGALAFLHDLGLIHADIKPENVV------RSNAEAFVGSCAS-LPLCSSP------------------IKLVDFGNCLTANELEAYNGKHTSGGFDVQTVTYRAPEVAAGLL 277          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14842.3693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5KT02_9PHAE1.250e-7481.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2ST04_9STRA2.250e-1545.13Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A4D9CR04_9STRA4.160e-1243.61Protein kinase domain-containing protein n=3 Tax=M... [more]
D8LS44_ECTSI1.460e-1092.11N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A835ZFW0_9STRA1.180e-939.50Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A2P6MPE9_9EUKA4.160e-834.21Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A0H5RBC3_9EUKA1.030e-736.70Protein kinase domain-containing protein (Fragment... [more]
L1JPH2_GUITC2.840e-631.19Protein kinase domain-containing protein (Fragment... [more]
A0A2P4YHK0_9STRA6.160e-633.33CMGC protein Kinase n=2 Tax=Phytophthora palmivora... [more]
A0A484ED60_BRELC8.410e-633.33Protein kinase domain-containing protein n=1 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14842contigEcto-sp13_S_contig14842:169..1029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size861
Hectar predicted targeting categoryother localisation
Exons1
Cds size861
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462792.116931-CDS-Ecto-sp13_S_contig14842:168..10291681462792.116931-CDS-Ecto-sp13_S_contig14842:168..1029Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14842 169..1029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14842.3693.1prot_Ecto-sp13_S_contig14842.3693.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14842 169..1029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14842.3693.1

>prot_Ecto-sp13_S_contig14842.3693.1 ID=prot_Ecto-sp13_S_contig14842.3693.1|Name=mRNA_Ecto-sp13_S_contig14842.3693.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=287bp
VVRLLDALTYQGHYCLVTELFSGTLSLSRAEGRAGQRERTSVPTAAATAA
EAPALTSTTTTSTTTTHNNSSTRSYSSAVEKWSVARLFVDKGTRESPGGF
QRAGAPAEPSGRLGWGSVAGVGPSAPCGGGLEDSVSSNGSSSIGRKKGER
STGDGGAAGFPSGGGGCPVVVIRHVALHLVSALLLLHSHGLIHADVKPEN
VLLRMEGRRQEGEGEGEACRRGRPLCLADFVSGRAGGGGGGVVERLTVKL
GDLGSAIHRSETYLFYGDFEIQTLAYRAPEARGCTL*
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mRNA from alignment at Ecto-sp13_S_contig14842:169..1029+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14842.3693.1 ID=mRNA_Ecto-sp13_S_contig14842.3693.1|Name=mRNA_Ecto-sp13_S_contig14842.3693.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=861bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14842:169..1029+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGTGAGGCTTCTCGATGCTCTCACCTACCAGGGGCACTACTGCCTCGT CACCGAGCTCTTCAGCGGCACTCTGTCTCTCTCGCGTGCGGAGGGGCGAG CGGGGCAGCGGGAACGAACCAGCGTGCCAACAGCAGCAGCAACAGCAGCA GAAGCACCAGCGCTAACGTCGACGACGACGACGTCGACGACGACGACGCA CAACAACAGCAGCACCAGATCCTACTCGAGCGCTGTCGAGAAGTGGTCGG TTGCCCGTCTCTTCGTTGACAAGGGAACCCGCGAAAGCCCGGGGGGTTTT CAACGGGCGGGCGCTCCTGCTGAACCAAGCGGCAGGCTAGGATGGGGTAG TGTCGCGGGCGTCGGACCGTCGGCACCCTGCGGCGGTGGCCTCGAGGACA GCGTCAGCAGCAATGGTAGCAGCAGCATAGGGCGGAAGAAGGGCGAGCGC AGCACGGGCGACGGCGGTGCCGCCGGGTTTCCGTCCGGCGGCGGCGGTTG CCCCGTGGTCGTCATCCGGCACGTTGCTCTCCACCTGGTGAGCGCGCTGC TGCTGCTCCACAGCCACGGGCTCATCCACGCGGACGTCAAGCCCGAGAAC GTCCTCCTGAGGATGGAAGGGCGGCGGCAGGAGGGGGAGGGCGAGGGGGA GGCTTGCCGCCGCGGCCGTCCCCTGTGCCTCGCTGATTTCGTTAGCGGAC GAGCAGGCGGCGGCGGCGGTGGTGTTGTTGAACGGCTGACGGTGAAGTTG GGAGACTTGGGCAGCGCCATCCATCGCAGTGAGACGTACCTGTTTTACGG AGACTTCGAGATACAGACGCTCGCCTACAGGGCACCAGAGGCAAGGGGGT GTACCTTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14842:169..1029+

>mRNA_Ecto-sp13_S_contig14842.3693.1 ID=mRNA_Ecto-sp13_S_contig14842.3693.1|Name=mRNA_Ecto-sp13_S_contig14842.3693.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=861bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14842:169..1029+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGTGAGGCTTCTCGATGCTCTCACCTACCAGGGGCACTACTGCCTCGT
CACCGAGCTCTTCAGCGGCACTCTGTCTCTCTCGCGTGCGGAGGGGCGAG
CGGGGCAGCGGGAACGAACCAGCGTGCCAACAGCAGCAGCAACAGCAGCA
GAAGCACCAGCGCTAACGTCGACGACGACGACGTCGACGACGACGACGCA
CAACAACAGCAGCACCAGATCCTACTCGAGCGCTGTCGAGAAGTGGTCGG
TTGCCCGTCTCTTCGTTGACAAGGGAACCCGCGAAAGCCCGGGGGGTTTT
CAACGGGCGGGCGCTCCTGCTGAACCAAGCGGCAGGCTAGGATGGGGTAG
TGTCGCGGGCGTCGGACCGTCGGCACCCTGCGGCGGTGGCCTCGAGGACA
GCGTCAGCAGCAATGGTAGCAGCAGCATAGGGCGGAAGAAGGGCGAGCGC
AGCACGGGCGACGGCGGTGCCGCCGGGTTTCCGTCCGGCGGCGGCGGTTG
CCCCGTGGTCGTCATCCGGCACGTTGCTCTCCACCTGGTGAGCGCGCTGC
TGCTGCTCCACAGCCACGGGCTCATCCACGCGGACGTCAAGCCCGAGAAC
GTCCTCCTGAGGATGGAAGGGCGGCGGCAGGAGGGGGAGGGCGAGGGGGA
GGCTTGCCGCCGCGGCCGTCCCCTGTGCCTCGCTGATTTCGTTAGCGGAC
GAGCAGGCGGCGGCGGCGGTGGTGTTGTTGAACGGCTGACGGTGAAGTTG
GGAGACTTGGGCAGCGCCATCCATCGCAGTGAGACGTACCTGTTTTACGG
AGACTTCGAGATACAGACGCTCGCCTACAGGGCACCAGAGGCAAGGGGGT
GTACCTTGTAG
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