mRNA_Ecto-sp13_S_contig1484.3691.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1484.3691.1
Unique NamemRNA_Ecto-sp13_S_contig1484.3691.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1484.3691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1484contigEcto-sp13_S_contig1484:13329..13650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score76.6
Seed ortholog evalue5.9e-12
Seed eggNOG ortholog2880.D7FX43
Model size322
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs29I43@1,2RRAZ@2759
Cds size246
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462792.0131307-CDS-Ecto-sp13_S_contig1484:13328..135741681462792.0131307-CDS-Ecto-sp13_S_contig1484:13328..13574Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1484 13329..13574 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462792.0223372-UTR-Ecto-sp13_S_contig1484:13574..136501681462792.0223372-UTR-Ecto-sp13_S_contig1484:13574..13650Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1484 13575..13650 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1484.3691.1prot_Ecto-sp13_S_contig1484.3691.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1484 13329..13574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1484.3691.1

>prot_Ecto-sp13_S_contig1484.3691.1 ID=prot_Ecto-sp13_S_contig1484.3691.1|Name=mRNA_Ecto-sp13_S_contig1484.3691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
MRTWISEGKARSCTSYKYLLIRCLIFRQPGWLPLCRRRCWGGIAPFSWRG
HVLQFVLDAWRLFSCRLLLRFVADFLRAAWL*
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mRNA from alignment at Ecto-sp13_S_contig1484:13329..13650+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1484.3691.1 ID=mRNA_Ecto-sp13_S_contig1484.3691.1|Name=mRNA_Ecto-sp13_S_contig1484.3691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=322bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1484:13329..13650+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCACCTGGATCAGCGAAGGGAAGGCAAGATCGTGCACAAGTTATAA
ATATTTGTTGATAAGGTGCCTTATCTTTCGTCAACCCGGCTGGCTACCGT
TGTGTCGCCGGCGTTGTTGGGGGGGGATTGCGCCGTTCTCGTGGCGCGGC
CACGTGCTGCAGTTTGTTCTGGACGCCTGGCGCTTATTTTCGTGCCGACT
GCTCTTGCGATTTGTTGCTGACTTTCTCCGTGCGGCGTGGCTTTGATCGG
ACTCGGTGTGTGTGGCTGTTGGTCTTGTCCGGGACGGAAAGCAGGACGAC
GTGTGTTTCTCGGTCTTCTTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1484:13329..13650+

>mRNA_Ecto-sp13_S_contig1484.3691.1 ID=mRNA_Ecto-sp13_S_contig1484.3691.1|Name=mRNA_Ecto-sp13_S_contig1484.3691.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1484:13329..13650+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCACCTGGATCAGCGAAGGGAAGGCAAGATCGTGCACAAGTTATAA
ATATTTGTTGATAAGGTGCCTTATCTTTCGTCAACCCGGCTGGCTACCGT
TGTGTCGCCGGCGTTGTTGGGGGGGGATTGCGCCGTTCTCGTGGCGCGGC
CACGTGCTGCAGTTTGTTCTGGACGCCTGGCGCTTATTTTCGTGCCGACT
GCTCTTGCGATTTGTTGCTGACTTTCTCCGTGCGGCGTGGCTTTGA
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