mRNA_Ecto-sp13_S_contig1484.3690.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1484.3690.1
Unique NamemRNA_Ecto-sp13_S_contig1484.3690.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1484.3690.1 vs. uniprot
Match: A0A6H5K5Q3_9PHAE (AP4E_app_platf domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5Q3_9PHAE)

HSP 1 Score: 534 bits (1376), Expect = 8.950e-180
Identity = 278/281 (98.93%), Postives = 280/281 (99.64%), Query Frame = 1 
Query:    1 MSGSHLSRDFFELVKAIGESKSKQEEDRIIMHEVGVLKKKMPEANVAREKMKEFLVRMIYVEMLGHDASFAYIKAVELTASQNLVQKRTGYLTASLTLSPSHEFRFMLVNQMQRDLSSSNMLEAAAALTALCKLATVDMIPAVMTDVVRLLKHERELVRKKAVMVLHRMNQLDPDSVSHMGDHLRRMLCDKDPSVMGSALCLLHDLARVDASSYKDLVPSFVSILKQITEHRLPRDFDYHRMPAPWIQMRLLRILALLGRADRATSEGMYEVLMDVMRRAD 843
            MSGSHLSR FFELVKAIGESKSKQEEDRIIMHEVGVLKKKMPEANVAREKMKEFLVRMIYVEMLGHDASFAYIKAVELTASQNLVQKRTGYLTASLTLSP+HEFRFMLVNQMQRDL+SSNMLEAAAALTALCKLATVDMIPAVMTDVVRLLKHERELVRKKAVMVLHRMNQLDPDSVSHMGDHLRRMLCDKDPSVMGSALCLLHDLARVDASSYKDLVPSFVSILKQITEHRLPRDFDYHRMPAPWIQMRLLRILALLGRADRATSEGMYEVLMDVMRRAD
Sbjct:    1 MSGSHLSRGFFELVKAIGESKSKQEEDRIIMHEVGVLKKKMPEANVAREKMKEFLVRMIYVEMLGHDASFAYIKAVELTASQNLVQKRTGYLTASLTLSPNHEFRFMLVNQMQRDLASSNMLEAAAALTALCKLATVDMIPAVMTDVVRLLKHERELVRKKAVMVLHRMNQLDPDSVSHMGDHLRRMLCDKDPSVMGSALCLLHDLARVDASSYKDLVPSFVSILKQITEHRLPRDFDYHRMPAPWIQMRLLRILALLGRADRATSEGMYEVLMDVMRRAD 281
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1484.3690.1 vs. uniprot
Match: F0Y3S6_AURAN (Adaptin_N domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3S6_AURAN)

HSP 1 Score: 407 bits (1046), Expect = 7.430e-139
Identity = 202/281 (71.89%), Postives = 241/281 (85.77%), Query Frame = 1 
Query:    1 MSGSHLSRDFFELVKAIGESKSKQEEDRIIMHEVGVLKKKMPEANVAREKMKEFLVRMIYVEMLGHDASFAYIKAVELTASQNLVQKRTGYLTASLTLSPSHEFRFMLVNQMQRDLSSSNMLEAAAALTALCKLATVDMIPAVMTDVVRLLKHERELVRKKAVMVLHRMNQLDPDSVSHMGDHLRRMLCDKDPSVMGSALCLLHDLARVDASSYKDLVPSFVSILKQITEHRLPRDFDYHRMPAPWIQMRLLRILALLGRADRATSEGMYEVLMDVMRRAD 843
            MSGSHLS+DFF+LVKAIGESKSKQ+ED II+ EV  LKK+MPEANV+++KMKEFL+R++YVEMLGHDASF YIKA+EL A++NLVQKR GYL + L LSPSHEFRFMLVNQ+Q+D++S+N LE  AALTA  +LAT DMIPA+   VV+L  H RELVRKK VMVLHR +QLD  +V H+ D +RR LCDKDPSVM +ALCLLHD+   + +++K+LVPSFVSILKQ+ EHRLPRDFDYHR+PAPW Q+RLLR+LA LGRAD+A SEGMYEVL DVMRRAD
Sbjct:    1 MSGSHLSKDFFDLVKAIGESKSKQQEDNIIVEEVATLKKRMPEANVSKKKMKEFLIRLVYVEMLGHDASFGYIKAIELAAAKNLVQKRVGYLCSGLCLSPSHEFRFMLVNQLQQDMASANYLEVGAALTATLRLATADMIPALTAHVVKLCAHGRELVRKKVVMVLHRFHQLDASAVEHLADTMRRTLCDKDPSVMTAALCLLHDMIAANPAAFKELVPSFVSILKQVVEHRLPRDFDYHRIPAPWAQLRLLRVLAHLGRADQAASEGMYEVLSDVMRRAD 281
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1484.3690.1 vs. uniprot
Match: A0A397FCZ5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FCZ5_9STRA)

HSP 1 Score: 409 bits (1052), Expect = 6.560e-138
Identity = 208/290 (71.72%), Postives = 248/290 (85.52%), Query Frame = 1 
Query:    1 MSGSHLSRDFFELVKAIGESKSKQEEDRIIMHEVGVLKKKMPEANVA---------REKMKEFLVRMIYVEMLGHDASFAYIKAVELTASQNLVQKRTGYLTASLTLSPSHEFRFMLVNQMQRDLSSSNMLEAAAALTALCKLATVDMIPAVMTDVVRLLKHERELVRKKAVMVLHRMNQLDPDSVSHMGDHLRRMLCDKDPSVMGSALCLLHDLARVDASSYKDLVPSFVSILKQITEHRLPRDFDYHRMPAPWIQMRLLRILALLGRADRATSEGMYEVLMDVMRRAD 843
            MSGSHLS+DFFELVK+IGESKSKQEEDRII+ EV  LK+KM E + A         ++K KEFL+R++YVEMLGHDASF YIKAVE+TAS NL+QKR GYLT SLTLSP+HEFRFM++NQ+QRDL S+N LE  +AL A+CKL T +MIPAV   ++  L+H+ ELVRKKAVM LHR +QL+PDSV+ +GD LRR LCD+DPSVMG+ALCLLHD+A +  S+YKDLVPS+VSILKQITEHRLPR+FDYHR+PAPWIQ+RLL+ILALLG+AD+ATSEGMYEVL DVMRRAD
Sbjct:  162 MSGSHLSKDFFELVKSIGESKSKQEEDRIIVSEVAQLKRKMTELSQASNSQAAQANKKKQKEFLIRLMYVEMLGHDASFGYIKAVEMTASTNLIQKRVGYLTCSLTLSPTHEFRFMIINQLQRDLQSANHLEVCSALMAVCKLVTTEMIPAVQPMIIESLRHDIELVRKKAVMALHRFHQLNPDSVAGLGDSLRRTLCDRDPSVMGAALCLLHDVAVITPSAYKDLVPSYVSILKQITEHRLPREFDYHRIPAPWIQIRLLKILALLGQADQATSEGMYEVLHDVMRRAD 451
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1484.3690.1 vs. uniprot
Match: A0A1V9ZUG4_9STRA (AP-2 complex subunit alpha n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZUG4_9STRA)

HSP 1 Score: 411 bits (1057), Expect = 1.190e-133
Identity = 210/290 (72.41%), Postives = 247/290 (85.17%), Query Frame = 1 
Query:    1 MSGSHLSRDFFELVKAIGESKSKQEEDRIIMHEVGVLKKKMPEANVA---------REKMKEFLVRMIYVEMLGHDASFAYIKAVELTASQNLVQKRTGYLTASLTLSPSHEFRFMLVNQMQRDLSSSNMLEAAAALTALCKLATVDMIPAVMTDVVRLLKHERELVRKKAVMVLHRMNQLDPDSVSHMGDHLRRMLCDKDPSVMGSALCLLHDLARVDASSYKDLVPSFVSILKQITEHRLPRDFDYHRMPAPWIQMRLLRILALLGRADRATSEGMYEVLMDVMRRAD 843
            MSGSHLS+DFFELVK+IGESKSKQEEDRII+ EV  LK+KM E   A         ++K KEFL+R++YVEMLGHDASF YIKAVE+TA+ NL+QKR GYLT SLTLSPSHEFRFM++NQ+QRDL S N LE  +AL A+CKL TV+MIPAV   ++  L+HE ELVRKKAVM LHR +QL+PDSV+ MGD LRR LCD+DPSVMG+ALCLLHD+A V+ ++YKDLVPS+VSILKQITEHRLPR+FDYHR+PAPWIQ+RLL+ILALLG+AD+ TSEGMYEVL DVMRRAD
Sbjct:    1 MSGSHLSKDFFELVKSIGESKSKQEEDRIIVQEVAQLKRKMAELGAASNSNQLQANKKKQKEFLIRLMYVEMLGHDASFGYIKAVEMTAATNLIQKRVGYLTCSLTLSPSHEFRFMIINQLQRDLQSPNHLEVCSALMAVCKLVTVEMIPAVQPMIMEALRHEIELVRKKAVMALHRFHQLNPDSVADMGDTLRRTLCDRDPSVMGAALCLLHDVAVVNPAAYKDLVPSYVSILKQITEHRLPREFDYHRIPAPWIQIRLLKILALLGQADQTTSEGMYEVLHDVMRRAD 290
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1484.3690.1 vs. uniprot
Match: A0A1V9ZX26_9STRA (AP-2 complex subunit alpha n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZX26_9STRA)

HSP 1 Score: 409 bits (1052), Expect = 7.800e-133
Identity = 208/290 (71.72%), Postives = 247/290 (85.17%), Query Frame = 1 
Query:    1 MSGSHLSRDFFELVKAIGESKSKQEEDRIIMHEVGVLKKKMPEANVA---------REKMKEFLVRMIYVEMLGHDASFAYIKAVELTASQNLVQKRTGYLTASLTLSPSHEFRFMLVNQMQRDLSSSNMLEAAAALTALCKLATVDMIPAVMTDVVRLLKHERELVRKKAVMVLHRMNQLDPDSVSHMGDHLRRMLCDKDPSVMGSALCLLHDLARVDASSYKDLVPSFVSILKQITEHRLPRDFDYHRMPAPWIQMRLLRILALLGRADRATSEGMYEVLMDVMRRAD 843
            MSGSHLS+DFFELVK+IGESKSKQEEDRII+ EV  LK+KM E   A         ++K KEFL+R++YVEMLGHDASF YIKAVE+TA+ NL+QKR GYLT SLTL+P+HEFRFM++NQ+QRDL S N LE  +AL A+CKL TV+MIPAV   ++  L+HE ELVRKKAVM LHR +QL+PDSV+ MGD LRR LCD+DPSVMG+ALCLLHD+A V+ ++YKDLVPS+VSILKQITEHRLPR+FDYHR+PAPWIQ+RLL+ILALLG+AD+ TSEGMYEVL DVMRRAD
Sbjct:    1 MSGSHLSKDFFELVKSIGESKSKQEEDRIIVQEVAQLKRKMQELGAASNSNQLQANKKKQKEFLIRLMYVEMLGHDASFGYIKAVEMTAATNLIQKRVGYLTCSLTLAPTHEFRFMIINQLQRDLQSPNHLEVCSALMAVCKLVTVEMIPAVQPMIMEALRHEIELVRKKAVMALHRFHQLNPDSVADMGDTLRRTLCDRDPSVMGAALCLLHDVALVNPAAYKDLVPSYVSILKQITEHRLPREFDYHRIPAPWIQIRLLKILALLGQADQTTSEGMYEVLHDVMRRAD 290
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1484.3690.1 vs. uniprot
Match: A0A485L340_9STRA (AP-2 complex subunit alpha n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L340_9STRA)

HSP 1 Score: 410 bits (1053), Expect = 1.130e-132
Identity = 209/290 (72.07%), Postives = 249/290 (85.86%), Query Frame = 1 
Query:    1 MSGSHLSRDFFELVKAIGESKSKQEEDRIIMHEVGVLKKKMPEANVA---------REKMKEFLVRMIYVEMLGHDASFAYIKAVELTASQNLVQKRTGYLTASLTLSPSHEFRFMLVNQMQRDLSSSNMLEAAAALTALCKLATVDMIPAVMTDVVRLLKHERELVRKKAVMVLHRMNQLDPDSVSHMGDHLRRMLCDKDPSVMGSALCLLHDLARVDASSYKDLVPSFVSILKQITEHRLPRDFDYHRMPAPWIQMRLLRILALLGRADRATSEGMYEVLMDVMRRAD 843
            MSGSHLS+DFFELVK+IGE+KSKQEEDRII+ EV  LK+KM E + A         ++K KEFL+R++YVEMLGHDASF YIKAVE+TAS NL+QKR GYLT SLTLSP+HEFRFM++NQ+QRDL S+N LE  +AL A+CKL TV+MIPAV   ++  L+H+ ELVRKKAVM LHR +QL+PDSVS +GD LRR LCD+DPSVMG+ALCLLHD+A V  ++YKDLVPS+VSILKQITEHRLPR+FDYHR+PAPWIQ+RLL+ILALLG+AD+ATSEGMYEVL DVMRRAD
Sbjct:    1 MSGSHLSKDFFELVKSIGEAKSKQEEDRIIVSEVAQLKRKMTELSQASNSQAAQANKKKQKEFLIRLMYVEMLGHDASFGYIKAVEMTASTNLIQKRVGYLTCSLTLSPTHEFRFMIINQLQRDLQSANHLEVCSALMAVCKLVTVEMIPAVQPMIIESLRHDIELVRKKAVMALHRFHQLNPDSVSGIGDSLRRTLCDRDPSVMGAALCLLHDVAVVTPTAYKDLVPSYVSILKQITEHRLPREFDYHRIPAPWIQIRLLKILALLGQADQATSEGMYEVLHDVMRRAD 290
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1484.3690.1 vs. uniprot
Match: W4FW74_9STRA (AP-2 complex subunit alpha n=6 Tax=Aphanomyces TaxID=100860 RepID=W4FW74_9STRA)

HSP 1 Score: 409 bits (1052), Expect = 1.800e-132
Identity = 208/290 (71.72%), Postives = 248/290 (85.52%), Query Frame = 1 
Query:    1 MSGSHLSRDFFELVKAIGESKSKQEEDRIIMHEVGVLKKKMPEANVA---------REKMKEFLVRMIYVEMLGHDASFAYIKAVELTASQNLVQKRTGYLTASLTLSPSHEFRFMLVNQMQRDLSSSNMLEAAAALTALCKLATVDMIPAVMTDVVRLLKHERELVRKKAVMVLHRMNQLDPDSVSHMGDHLRRMLCDKDPSVMGSALCLLHDLARVDASSYKDLVPSFVSILKQITEHRLPRDFDYHRMPAPWIQMRLLRILALLGRADRATSEGMYEVLMDVMRRAD 843
            MSGSHLS+DFFELVK+IGESKSKQEEDRII+ EV  LK+KM E + A         ++K KEFL+R++YVEMLGHDASF YIKAVE+TAS NL+QKR GYLT SLTLSP+HEFRFM++NQ+QRDL S+N LE  +AL A+CKL T +MIPAV   ++  L+H+ ELVRKKAVM LHR +QL+PDSV+ +GD LRR LCD+DPSVMG+ALCLLHD+A +  S+YKDLVPS+VSILKQITEHRLPR+FDYHR+PAPWIQ+RLL+ILALLG+AD+ATSEGMYEVL DVMRRAD
Sbjct:    1 MSGSHLSKDFFELVKSIGESKSKQEEDRIIVSEVAQLKRKMTELSQASNSQAAQANKKKQKEFLIRLMYVEMLGHDASFGYIKAVEMTASTNLIQKRVGYLTCSLTLSPTHEFRFMIINQLQRDLQSANHLEVCSALMAVCKLVTTEMIPAVQPMIIESLRHDIELVRKKAVMALHRFHQLNPDSVAGLGDSLRRTLCDRDPSVMGAALCLLHDVAVITPSAYKDLVPSYVSILKQITEHRLPREFDYHRIPAPWIQIRLLKILALLGQADQATSEGMYEVLHDVMRRAD 290
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1484.3690.1 vs. uniprot
Match: A0A6G0XRJ2_9STRA (AP-2 complex subunit alpha n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRJ2_9STRA)

HSP 1 Score: 408 bits (1048), Expect = 4.220e-132
Identity = 207/290 (71.38%), Postives = 248/290 (85.52%), Query Frame = 1 
Query:    1 MSGSHLSRDFFELVKAIGESKSKQEEDRIIMHEVGVLKKKMPEANVA---------REKMKEFLVRMIYVEMLGHDASFAYIKAVELTASQNLVQKRTGYLTASLTLSPSHEFRFMLVNQMQRDLSSSNMLEAAAALTALCKLATVDMIPAVMTDVVRLLKHERELVRKKAVMVLHRMNQLDPDSVSHMGDHLRRMLCDKDPSVMGSALCLLHDLARVDASSYKDLVPSFVSILKQITEHRLPRDFDYHRMPAPWIQMRLLRILALLGRADRATSEGMYEVLMDVMRRAD 843
            MSGSHLS+DFFELVK+IGE+KSKQEEDRII+ EV  LK+KM E + A         ++K KEFL+R++YVEMLGHDASF YIKAVE+TAS NL+QKR GYLT SLTLSP+HEFRFM++NQ+QRDL S+N LE  +AL A+CKL TV+MIPAV   ++  L+H+ ELVRKKAVM LHR +QL+PDSVS +GD LRR LCD+DPSVMG+ALCLLHD+A +  ++YKDLVPS+VSILKQITEHRLPR+FDYHR+PAPWIQ+RLL+ILALLG+AD+ TSEGMYEVL DVMRRAD
Sbjct:    1 MSGSHLSKDFFELVKSIGEAKSKQEEDRIIVSEVAQLKRKMTELSQASNSQVAQANKKKQKEFLIRLMYVEMLGHDASFGYIKAVEMTASTNLIQKRVGYLTCSLTLSPTHEFRFMIINQLQRDLQSANHLEVCSALMAVCKLVTVEMIPAVQPMIIEALRHDIELVRKKAVMALHRFHQLNPDSVSGIGDSLRRTLCDRDPSVMGAALCLLHDVAVITPTAYKDLVPSYVSILKQITEHRLPREFDYHRIPAPWIQIRLLKILALLGQADQQTSEGMYEVLHDVMRRAD 290
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1484.3690.1 vs. uniprot
Match: A0A7S3ZZ75_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZ75_9STRA)

HSP 1 Score: 399 bits (1024), Expect = 4.850e-131
Identity = 201/281 (71.53%), Postives = 238/281 (84.70%), Query Frame = 1 
Query:    1 MSGSHLSRDFFELVKAIGESKSKQEEDRIIMHEVGVLKKKMPEANVAREKMKEFLVRMIYVEMLGHDASFAYIKAVELTASQNLVQKRTGYLTASLTLSPSHEFRFMLVNQMQRDLSSSNMLEAAAALTALCKLATVDMIPAVMTDVVRLLKHERELVRKKAVMVLHRMNQLDPDSVSHMGDHLRRMLCDKDPSVMGSALCLLHDLARVDASSYKDLVPSFVSILKQITEHRLPRDFDYHRMPAPWIQMRLLRILALLGRADRATSEGMYEVLMDVMRRAD 843
            M  +HLS+DFF+LVKAIGESKSKQ+EDRII  EV  LKKKMPEA ++R+KMKEFLVR+IYVEMLGHDA+F YI+A+EL AS+NL+QKR GYL + L LSP HEFRFMLVNQ+Q+D++SSN LE AAAL A  +LAT DMIP ++  VV+LL+H+RELVRKK VMVLHR ++LD  +VSH+G  +RR LCDKDPSVM ++LCLLH         +K+LVPSFVSILKQI EHRLPRDFDYHRMPAPW Q+RLLRILALLGRAD++TSEGMYEVL DV+RRAD
Sbjct:    4 MMSAHLSKDFFDLVKAIGESKSKQQEDRIISDEVQTLKKKMPEAKISRKKMKEFLVRLIYVEMLGHDAAFGYIRAIELAASKNLIQKRVGYLCSGLCLSPDHEFRFMLVNQLQQDMTSSNFLEVAAALGATIRLATTDMIPPLLAHVVKLLQHDRELVRKKTVMVLHRFHRLDASAVSHLGPQMRRTLCDKDPSVMAASLCLLHAQITEKPLGFKELVPSFVSILKQIVEHRLPRDFDYHRMPAPWAQLRLLRILALLGRADQSTSEGMYEVLGDVIRRAD 284
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1484.3690.1 vs. uniprot
Match: A0A484DRC7_BRELC (AP4E_app_platf domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DRC7_BRELC)

HSP 1 Score: 405 bits (1041), Expect = 2.450e-130
Identity = 203/289 (70.24%), Postives = 244/289 (84.43%), Query Frame = 1 
Query:    1 MSGSHLSRDFFELVKAIGESKSKQEEDRIIMHEVGVLKKKMPE--------ANVAREKMKEFLVRMIYVEMLGHDASFAYIKAVELTASQNLVQKRTGYLTASLTLSPSHEFRFMLVNQMQRDLSSSNMLEAAAALTALCKLATVDMIPAVMTDVVRLLKHERELVRKKAVMVLHRMNQLDPDSVSHMGDHLRRMLCDKDPSVMGSALCLLHDLARVDASSYKDLVPSFVSILKQITEHRLPRDFDYHRMPAPWIQMRLLRILALLGRADRATSEGMYEVLMDVMRRAD 843
            MSG HLS++FFELVK+IGESKSKQEEDRII+HEV +LK+K+ E        +N+  ++ +EFL+R++YVEMLGHDASF YIKAVE+TAS NL+QKR GYLT SL LSP+HEFRFM++NQ+QRDL SSN LE  AAL A+CKL TV+M+PAV   ++ LL+H+ ELVRKKAVM +HR +QL+PDSV   GD LRR LCD+DPSVMG+ LC+LHDLA    + YKDLVPSFVSILKQITEHRLPR+FDYHR+PAPWIQ+RLL+ILALLG+AD+ TSEGMYEVL DVMRRAD
Sbjct:    1 MSGGHLSKEFFELVKSIGESKSKQEEDRIIIHEVAMLKRKLSEVTATSSTSSNLVNKRKREFLIRLMYVEMLGHDASFGYIKAVEMTASTNLMQKRVGYLTCSLCLSPTHEFRFMIINQLQRDLQSSNHLEVCAALMAVCKLVTVEMVPAVQPMILDLLRHDAELVRKKAVMAIHRFHQLNPDSVKDTGDALRRTLCDRDPSVMGATLCILHDLAEATPTDYKDLVPSFVSILKQITEHRLPREFDYHRIPAPWIQIRLLKILALLGQADQQTSEGMYEVLHDVMRRAD 289
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1484.3690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5Q3_9PHAE8.950e-18098.93AP4E_app_platf domain-containing protein n=2 Tax=E... [more]
F0Y3S6_AURAN7.430e-13971.89Adaptin_N domain-containing protein (Fragment) n=1... [more]
A0A397FCZ5_9STRA6.560e-13871.72Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A1V9ZUG4_9STRA1.190e-13372.41AP-2 complex subunit alpha n=1 Tax=Achlya hypogyna... [more]
A0A1V9ZX26_9STRA7.800e-13371.72AP-2 complex subunit alpha n=1 Tax=Thraustotheca c... [more]
A0A485L340_9STRA1.130e-13272.07AP-2 complex subunit alpha n=1 Tax=Aphanomyces ste... [more]
W4FW74_9STRA1.800e-13271.72AP-2 complex subunit alpha n=6 Tax=Aphanomyces Tax... [more]
A0A6G0XRJ2_9STRA4.220e-13271.38AP-2 complex subunit alpha n=1 Tax=Aphanomyces eut... [more]
A0A7S3ZZ75_9STRA4.850e-13171.53Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A484DRC7_BRELC2.450e-13070.24AP4E_app_platf domain-containing protein n=1 Tax=B... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1484contigEcto-sp13_S_contig1484:1..4111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score540.0
Seed ortholog evalue6.4e-151
Seed eggNOG ortholog2880.D7FX42
Preferred nameAP4E1
Model size843
KEGG koko:K12400,ko:K20164
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030119,GO:0030124,GO:0031090,GO:0031410,GO:0031904,GO:0031974,GO:0031982,GO:0031984,GO:0032588,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791,GO:0098796
Exons6
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG4354@1,KOG1062@2759
Cds size843
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1484.3690.1prot_Ecto-sp13_S_contig1484.3690.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1484 1..4111 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462791.9350622-CDS-Ecto-sp13_S_contig1484:0..461681462791.9350622-CDS-Ecto-sp13_S_contig1484:0..46Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1484 1..46 -
1681462791.9473307-CDS-Ecto-sp13_S_contig1484:399..5511681462791.9473307-CDS-Ecto-sp13_S_contig1484:399..551Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1484 400..551 -
1681462791.9570026-CDS-Ecto-sp13_S_contig1484:1139..12591681462791.9570026-CDS-Ecto-sp13_S_contig1484:1139..1259Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1484 1140..1259 -
1681462791.9664257-CDS-Ecto-sp13_S_contig1484:2068..21901681462791.9664257-CDS-Ecto-sp13_S_contig1484:2068..2190Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1484 2069..2190 -
1681462791.9751632-CDS-Ecto-sp13_S_contig1484:2933..31141681462791.9751632-CDS-Ecto-sp13_S_contig1484:2933..3114Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1484 2934..3114 -
1681462791.9836926-CDS-Ecto-sp13_S_contig1484:3889..41111681462791.9836926-CDS-Ecto-sp13_S_contig1484:3889..4111Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1484 3890..4111 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1484.3690.1

>prot_Ecto-sp13_S_contig1484.3690.1 ID=prot_Ecto-sp13_S_contig1484.3690.1|Name=mRNA_Ecto-sp13_S_contig1484.3690.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=281bp
MSGSHLSRDFFELVKAIGESKSKQEEDRIIMHEVGVLKKKMPEANVAREK
MKEFLVRMIYVEMLGHDASFAYIKAVELTASQNLVQKRTGYLTASLTLSP
SHEFRFMLVNQMQRDLSSSNMLEAAAALTALCKLATVDMIPAVMTDVVRL
LKHERELVRKKAVMVLHRMNQLDPDSVSHMGDHLRRMLCDKDPSVMGSAL
CLLHDLARVDASSYKDLVPSFVSILKQITEHRLPRDFDYHRMPAPWIQMR
LLRILALLGRADRATSEGMYEVLMDVMRRAD
back to top

mRNA from alignment at Ecto-sp13_S_contig1484:1..4111-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1484.3690.1 ID=mRNA_Ecto-sp13_S_contig1484.3690.1|Name=mRNA_Ecto-sp13_S_contig1484.3690.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1484:1..4111- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGGGAGCCACCTATCAAGAGACTTCTTCGAGCTGGTGAAAGCCAT
CGGCGAGAGCAAGTCCAAGCAGGAGGAGGACCGCATCATCATGCACGAGG
TGGGCGTGCTCAAGAAGAAGATGCCGGAGGCGAACGTGGCCCGCGAGAAG
ATGAAGGAGTTCCTGGTGCGGATGATCTACGTCGAGATGCTCGGCCACGA
CGCCTCTTTCGCCTACATCAAGGTGCGTTTTGTTTGCTTCTTTGGAGGGT
CGGAGCTTTTTTGTCATGTTTTTTTAGGGTCGTGTTTAATTTTTTTTCAG
GATCGGAGCCTTGTTCTTGTTTTTTGTCCTTTTTTTTTGTTTCGCCGGGA
CCGCATATACGGCTTTACGACATTATCTGCTCGATATTGCAAACAGGTTA
CAATGCCTGTCCTTACCGTGATGCTGCCGTGGTTGTTGTAGTGGTGTAGG
TGGGGGCGGGGGGGGGTACGAGTATCTCCAGATGTTTAGCGCTGTCTTGT
CCAAGAACCATCATCGGTACCCGATCGGGGGAGTGCGATGTTCCTCGAAC
ACAAAAACGTGCCGATTCGTGGTGCAGATATCTACGAGCACGCAATCACG
GTAAGTGTATGCCGTTCCTTGCTCTGCCATGACCGCAGTCGAACCGTGAC
CGCGGCCGAACCGTGGCCGCAGTCGAAGCATGCGGGAATTTCGAACCAAA
CATTTTCTTGTCGATCGGTGGTCTCTTGTTCTTCTGGTTCGCCCCTTTTT
TGTGCTTGAACTGTCCCCCCCCCTCCCCTTCATCACGTTCCCTTTGTGCC
TCCAATTGATTTTTTCCGCACGTGATTAATCCGCCGCCTCGTCCTGCTTG
TTTCTCGTCATGTTTTTCCGCACCCCTCGTTCGTTTTGTTTCCCCAATGC
CTACTTTGAAACGCTTTTCACCGTTTGCCTCTCCTCCCTCTCTCTATTTC
TTGTTTTCCATTTGCGTTATTGTCTATGTTGTGGTCTATTCCACCAGGCG
GTGGAATTGACGGCTAGCCAAAACCTCGTGCAGAAGAGGACAGGGTACCT
CACGGCCTCGCTCACGCTGTCGCCGAGCCACGAGTTCCGGTTCATGCTAG
TCAACCAGATGCAGAGGGACCTGTCTAGTTCCAATATGCTCGAGGCAGCC
GCGGCTCTCACGGCCTTGTGCAAGCTCGGTGAGGACACACTTGGTTGTCG
GCGTTGCTGCTGCCTTCTGCTGTTGTTGTGGCCGTTGTTGTTGATGCTAG
TGCTACTGCTGGTGCTGCTACTGCTGGTGCTGGTGCTGGTTCGGTGCTGG
TGCTGGTGCTGGTGCTGTTGTTTGCTTTTTTTTGTGTTCGCGCTTGTGTT
GTGCGGTTGTGTCTTTGTTTTTGCTGAGTTGGAATTGGCTACCATCCTCG
CAGCCGAGAAGCACTGCAATTTGCTCGCTGTAGGTCACGGCGACGTTTGC
ACGACAACCCTGTACGGAAGAGTTGTGCTGACATTTGTTGTTTTCGGTGC
AAAGTCTCTCCTATCGCTATGTGATCGATGTCCCTGCCGCGGTTGCCGTA
GACGGAACCCATCCCGCGAACCGCCCCGGTAACACCTCGCGACAACGATG
GAGTAGCACGGATGCGTCCAACACTTCGTCCTTTACGCTCCATCCCCCTT
CCCCTCGCTACGCCTAGAAAACAATCGCCGCATGCTGATGCCCCCCCGAA
ACAAGCTCTGGCACGCTGATGACGTTTCATTCTAGAACACACACGACGAG
AGCGCTTTGGTTCGAATGGCGGCGTTTTTTTCTGTGTGTGTTTGTTTTCG
TGTTTCTCTTGTTTTGTTTTGTTTCCCTCCTGCGAAACAGATTTTTTTTT
TCGTTTTTTTTCTGTTTTCGTTATTTTTCTTCCGGCCGAACCGAACAACT
ATAAACCACGTGGCTTGTCAGCAACGGTGGACATGATCCCTGCGGTGATG
ACGGATGTTGTCCGGCTTCTCAAGCACGAACGGGAGCTAGTGCGGAAGAA
GGCCGTGATGGTGCTGCACCGCATGAACCAGCTCGACCCTGACGTGAGAA
GGAAAGAGAGGAAGGCATAAATATGGGTGGCAGGGGGGGGGGTGTATCCA
TTGTCATGCATGGTGACACGGGGGGGGGGATATAAGGCAGGTTAGACAGG
AAACGGGTCAGAGGGTTGACATAAAATGGATCGGAATCGATCAGAATCAC
AAGGGAATTAGCCTGTACCGACTGACTGAGTGGCGTGGAGTGGACAACGC
GCTCTACTAGCACGCTGAGAGTGGTGCACCACACCGTTTTTCATCGGAAC
GATGCCTCCGATCCGACCCCTCTGAAGACTAGAGAGGGTATTTCGATGTG
GGCATGGGAGGTGGTAGGTAGTGCTCGGTGAGGTTTTTGCAGAATTGTGA
CTGCTGTGATGCACTCTGCACCGCACCGAAGTGTTGCTGGTATTCTCACT
CGCCGTGTTTCTGTTCGAACAACCAAAGATAGGGTCAAACCTACGCAAAA
ATAGAGTTGCATAATTGGCGCTGCTTGGAGGATCACCTGGAAATGCAGGA
TATCTCACCCGTACATCGACCTCCACGTGTGTCCGTTCATGGCTCTTGCA
GGGGACCTCCTGAGCCCCCTCCCTGCTCCCGCCGCTCAGGCTTATTCTCG
TGTGTGTCCCCCCCTTCAATGCCGCCGGACACGTCAATGTCCACCCTGTG
AAAAAAAGTCTCCCTCAGACGCTCACGCCCCGCGTACCTCTCCATCCAAT
CTCTCGTTTGATGCTCGGTGGTGTCTTTTTATCTTCAATGCTGTGTCGAC
GATGACGGCGGCGCGGAAAATGGCGCACCACTGCGTGCCCCGGGGGAAAC
AGTCGGTGTCTCACATGGGCGATCACCTGCGACGCATGCTGTGCGACAAG
GATCCCTCCGTGATGGGGTCGGCGCTGTGCCTTCTTCACGACCTCGCCAG
GGTGGACGCTTCGAGCTACAAGGTGTGTGTGTAGCCTGGGTATGCAGCTC
TGAGGTCTCTAAGTTTCTTTTTTGCTGGTACTTCAGAAGTGCTGTTGACT
GCGCCATCGTAAACAGATGAGACGGTGCTTTTTGAACGGATTATTTCGGT
GTAGACCGACCTTAACTTTTTCACAAGGTGAACTGTAACTGTTTATCTCA
ACAGAGAGAGGGGCGGAGGGGGTCTGCTAAAGGAAAAGAGGAAAAGTTCG
GGGGTCGTTGAAGTAGAAGGGCACAGCAGTGCTGAAGAGCTTTTGCGGCC
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCAATTTCTGCTTCCG
TGCTGCCGTGGCGTGCAATCATGCCTTGCTTCAGGCAGTCCCTTGAGTAG
GCGAGTCTCACCCTCACCCTTCTTCCGTGTGACCACCGTCTTGAATCATG
AACGCCAATCGGCGTGTGCGTCCTGCTTCCCCCTCCCACCCCCCCCCCCT
CGCCCCTTAACGAATTGCGGGGCCACGGACTCCGAAAAACTTACCATGTG
CTTTCATTTTCACAAGTACCCCTTTCCCCCCCCTACCCTTACTCACGACC
GCAATTGCAGGACCTGGTCCCAAGCTTTGTGTCGATCTTGAAGCAGATCA
CGGAACACCGGCTACCGCGCGACTTCGACTACCACAGGATGCCCGCACCG
TGGATCCAGATGCGGCTCTTGCGGATCCTGGCGTTGCTGGGCAGAGCCGA
CCGGGCGACAAGGTGGGGACGGTTTTTTCTGTTTTTTTCTTTTTCTTTTT
TCCACTTTTTTTTGTCGGTGCGATAAAAGCGTGGAAAGATGTGTTGAACG
AGGTCGTGCTTGCTGCTGCTGTACTATGTCGCTGATTTAAGCTTACCCGT
GCTGCCTTGAGACTTGCTCTTTGAAAGGCTCTTTTGCGCCCTCGTTCTTG
CTCTGTGCGCACACCGGGTGGCCTTAACGCACCATGTTGGTGACACAGCA
CTTATGTCTTGTGCCGATGGCTCGGATGGTGACACTTTTTTGCGAGGATA
TGATGACAGCGATGGCGCTGCTGCTCCCCCCGTGACCCGTCCATTCTACG
TTTCCCCCCTGACAGTGAGGGCATGTACGAGGTCCTGATGGACGTCATGC
GGCGCGCGGAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1484:1..4111-

>mRNA_Ecto-sp13_S_contig1484.3690.1 ID=mRNA_Ecto-sp13_S_contig1484.3690.1|Name=mRNA_Ecto-sp13_S_contig1484.3690.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=843bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1484:1..4111- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGGGAGCCACCTATCAAGAGACTTCTTCGAGCTGGTGAAAGCCAT
CGGCGAGAGCAAGTCCAAGCAGGAGGAGGACCGCATCATCATGCACGAGG
TGGGCGTGCTCAAGAAGAAGATGCCGGAGGCGAACGTGGCCCGCGAGAAG
ATGAAGGAGTTCCTGGTGCGGATGATCTACGTCGAGATGCTCGGCCACGA
CGCCTCTTTCGCCTACATCAAGGCGGTGGAATTGACGGCTAGCCAAAACC
TCGTGCAGAAGAGGACAGGGTACCTCACGGCCTCGCTCACGCTGTCGCCG
AGCCACGAGTTCCGGTTCATGCTAGTCAACCAGATGCAGAGGGACCTGTC
TAGTTCCAATATGCTCGAGGCAGCCGCGGCTCTCACGGCCTTGTGCAAGC
TCGCAACGGTGGACATGATCCCTGCGGTGATGACGGATGTTGTCCGGCTT
CTCAAGCACGAACGGGAGCTAGTGCGGAAGAAGGCCGTGATGGTGCTGCA
CCGCATGAACCAGCTCGACCCTGACTCGGTGTCTCACATGGGCGATCACC
TGCGACGCATGCTGTGCGACAAGGATCCCTCCGTGATGGGGTCGGCGCTG
TGCCTTCTTCACGACCTCGCCAGGGTGGACGCTTCGAGCTACAAGGACCT
GGTCCCAAGCTTTGTGTCGATCTTGAAGCAGATCACGGAACACCGGCTAC
CGCGCGACTTCGACTACCACAGGATGCCCGCACCGTGGATCCAGATGCGG
CTCTTGCGGATCCTGGCGTTGCTGGGCAGAGCCGACCGGGCGACAAGTGA
GGGCATGTACGAGGTCCTGATGGACGTCATGCGGCGCGCGGAC
back to top