mRNA_Ecto-sp13_S_contig14836.3687.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14836.3687.1
Unique NamemRNA_Ecto-sp13_S_contig14836.3687.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14836.3687.1 vs. uniprot
Match: D8LSU0_ECTSI (Similar to helicase, lymphoid-specific isoform 9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU0_ECTSI)

HSP 1 Score: 354 bits (909), Expect = 1.020e-113
Identity = 192/200 (96.00%), Postives = 193/200 (96.50%), Query Frame = 1 
Query:    1 LCSGTPVQNNLGELLALLSFLMPEIFRSDVIETLLEFLGNNADEQASSSSS-FQVREVRGMLAPFVLRRLKSDVLKQLVAKNESLEKVPLSKVAKEVSGYSDFDLHQVCSGFDSLKHLCLSEETLFTSAKMERLRTLLPQLVSEGHRILLFSQWTRLLDLLEASAHVLLGDSMGMTFCRLDGSTPVSERKALIDKFGADT 597
            L SGTPVQNNLGELLALLSFLMPEIFRSDVIETLLEFLGNNADEQASSSSS FQVREVRGMLAPFVLRRLKSDVLKQLVAKNESLEKVPLSKVAKEVSGYSDFDLHQVCSGFDSLKHLCLSEETLFTSAKMERLR LLPQLVSEGHRILLFSQWTRLLDLLE    VLLG+SMGMTFCRLDGSTPVSERKALIDKFGADT
Sbjct:  636 LLSGTPVQNNLGELLALLSFLMPEIFRSDVIETLLEFLGNNADEQASSSSSSFQVREVRGMLAPFVLRRLKSDVLKQLVAKNESLEKVPLSKVAKEVSGYSDFDLHQVCSGFDSLKHLCLSEETLFTSAKMERLRALLPQLVSEGHRILLFSQWTRLLDLLE----VLLGESMGMTFCRLDGSTPVSERKALIDKFGADT 831
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BLAST of mRNA_Ecto-sp13_S_contig14836.3687.1 vs. uniprot
Match: A0A6H5KRD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD4_9PHAE)

HSP 1 Score: 309 bits (791), Expect = 7.400e-95
Identity = 197/361 (54.57%), Postives = 198/361 (54.85%), Query Frame = 1 
Query:    1 LCSGTPVQNNLGELLALLSFLMPEIFRSDVIETLLEFLGNNADEQASSSSSFQVREVRGMLAPFVLRRLKSDVLKQLVAKNESLEKVPLSKV------------------------------------------------------------------------------------------------------------------------------------------------------------------AKEVSGYSDFDLHQVCSGFDSLKHLCLSEETLFTSAKMERLRTLLPQLVSEGHRILLFSQWTRLLDLLEASAHVLLGDSMGMTFCRLDGSTPVSERKALIDKFGADT 597
            L SGTPVQNNLGELLALLSFLMPEIFRSDVIETLLEFLGNNADEQASSSSSFQVREVRGMLAPFVLRRLKSDVLKQLVAKNESLEKVPLSKV                                                                                                                                                                  AKEVSGYSDFDLHQVCSGFDSLKHLCLSEETLFTSAKMERLRTLLPQLVSEGHR+LLFSQWTRLLDLLEASAHVLLGDSMGMTFCRLDGSTPVSERKALIDKFGADT
Sbjct:  739 LLSGTPVQNNLGELLALLSFLMPEIFRSDVIETLLEFLGNNADEQASSSSSFQVREVRGMLAPFVLRRLKSDVLKQLVAKNESLEKVPLSKVQRSLYDGVLENHVRQKRAAIERALAQERALFGGGTVTDLTSNVTRSXXXXXXXXXXXXXXXXXXXXXXXXXGDGDAIEILDDGVAGRRSGGHAGGEEGEADLLEEVGISAKECKNIFTELRKGANHPLMLLNHFKGGGKMEKVVEVLHRTGYFGGQATKDMVAKEVSGYSDFDLHQVCSGFDSLKHLCLSEETLFTSAKMERLRTLLPQLVSEGHRVLLFSQWTRLLDLLEASAHVLLGDSMGMTFCRLDGSTPVSERKALIDKFGADT 1099
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BLAST of mRNA_Ecto-sp13_S_contig14836.3687.1 vs. uniprot
Match: A0A835Z3Y7_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Y7_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.000e-38
Identity = 113/323 (34.98%), Postives = 147/323 (45.51%), Query Frame = 1 
Query:    1 LCSGTPVQNNLGELLALLS----------------------------FLMPEIFRSDVIETLLEFL------GNNADEQASSSSSFQVREVRGMLAPFVLRRLKSDVLKQLVAKNESLEKVPLSK-------------------------------------------------------------------------------------------VAKEVSGYSDFDLHQVCSGFDSLKHLCLSEETLFTSAKMERLRTLLPQLVSEGHRILLFSQWTRLLDLLEASAHVLLGDSMGMTFCRLDGSTPVSERKALIDKFGAD 594
            L SGTPVQNNL ELLALL                             FLMP++FR+D +  LLE L      G +A       +  +V +VRGML+PFVLRRLKS VL+QLV K   ++ +PL                                                                                             V KE+  +SD+D+HQ+CS F +L+ L L ++ LF+SAKM RLR LLP+L ++GHR+LLFSQWTR+LDL+E    V L + +GM + RLDGSTPV +R+ALI  F AD
Sbjct:  734 LLSGTPVQNNLKELLALLRSLMPEAFSCGRAPGVLMFRMCCLLALLMFLMPKVFRADAVLNLLEMLEEGMSNGGSAHRGRGGLALPRVADVRGMLSPFVLRRLKSAVLEQLVPKTTDVDVLPLGDMQKQLYDGILKAHLKRKGGGVKGDAAEDTNAVVAAIVGSTTEAKNVFTELRKAANHPLLLLHHYKDDATISRIVEVAYGAAYFGDAATPQMVRKELETFSDYDMHQLCSHFPALEDLTLQQDALFSSAKMVRLRGLLPELQAQGHRVLLFSQWTRILDLME----VFLSEVLGMRYTRLDGSTPVQQRQALIQGFAAD 1052
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BLAST of mRNA_Ecto-sp13_S_contig14836.3687.1 vs. uniprot
Match: L1I6R2_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I6R2_GUITC)

HSP 1 Score: 138 bits (348), Expect = 2.470e-35
Identity = 90/224 (40.18%), Postives = 122/224 (54.46%), Query Frame = 1 
Query:    1 LCSGTPVQNNLGELLALLSFLMPEIFRSD---------VIETLLEFLGNNADEQASSSSSFQVREVRGMLAPFVLRRLKSDVLKQLVAKNESLEKVPLSKVAKEVSGYSDFDLHQVCSGFDSLKHLCLSEETLF----------------TSAKMERLRTLLPQLVSEGHRILLFSQWTRLLDLLEASAHVLLGDSMGMTFCRLDGSTPVSERKALIDKFGADT 597
            L +GTP+ NNL ELL LL FLMPE+F  D         +    +   G +      S     V  V+ M+ PFVLRR K DVL +LV K++ +       + KE+S YSDF LHQ+C     L  L L  +++F                +SAK+ +L  +LP+L SEGHR+LLFSQWT +LD++E      L D     + RLDGST V ER+ L+D+F +DT
Sbjct:  185 LLTGTPINNNLPELLVLLQFLMPELFDPDDEVESESGNLARVKMRQKGCSCSHLLLSHQKVNVERVKKMIKPFVLRRCKCDVLGELVPKDQQV-------IQKEISDYSDFVLHQMCQDHKRLNKLSLKVQSIFPAIRPSHLFVQPEDISSSAKLRKLEEILPRLQSEGHRVLLFSQWTTMLDIIED----FLIDK-DYLYTRLDGSTAVKERQELLDRFNSDT 396
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BLAST of mRNA_Ecto-sp13_S_contig14836.3687.1 vs. uniprot
Match: A0A7S0H4N3_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0H4N3_9CRYP)

HSP 1 Score: 131 bits (329), Expect = 8.550e-32
Identity = 99/291 (34.02%), Postives = 130/291 (44.67%), Query Frame = 1 
Query:    1 LCSGTPVQNNLGELLALLSFLMPEIFRSDVIETLLEFLGNNADEQASS-SSSFQVREVRGMLAPFVLRRLKSDVLKQLVAKNE-----------------------------------------SLEKVPLSK--------------------------------------------------VAKEVSGYSDFDLHQVCSGFDSLKHLCLSEETLFTSAKMERLRTLLPQLVSEGHRILLFSQWTRLLDLLEASAHVLLGDSMGMTFCRLDGSTPVSERKALIDKFGADT 597
            L +GTP+ NNL ELL LL FLMPE+F  D  ETL E      + ++ + +    V  V+ M+ PFVLRR K DVL +LV K++                                         S+EK  +SK                                                  V KE+S YSDF LHQ+C     L HL L  + +  SAK+ +L  +LPQL SEGHR+LLFSQWT +LD++E      L D     + RLDGST V ER+ L+D+F +DT
Sbjct:  417 LLTGTPINNNLPELLVLLQFLMPELFDPDD-ETLWEVFDEKVESESGNLARKVNVGRVKKMIKPFVLRRCKCDVLGELVPKDQQVIQLNLPEVQRRVYNQIISNWELKSKKLTADSSGGSRTTRSIEKAAMSKKMINNIFCELRKAANHPLLVRSRYNDEALKKIAHQLYVNGHFGNSCTLQQVEKEISDYSDFVLHQMCQDHKKLNHLSLKPQDIAASAKLRKLEEILPQLQSEGHRVLLFSQWTTMLDIIEE----FLNDK-DYLYMRLDGSTAVKERQELLDRFNSDT 701
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BLAST of mRNA_Ecto-sp13_S_contig14836.3687.1 vs. uniprot
Match: A0A7S4UGD6_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UGD6_GUITH)

HSP 1 Score: 125 bits (315), Expect = 5.660e-30
Identity = 97/288 (33.68%), Postives = 130/288 (45.14%), Query Frame = 1 
Query:    1 LCSGTPVQNNLGELLALLSFLMPEIFRSDVIETLLEFLGNNADEQASS-SSSFQVREVRGMLAPFVLRRLKSDVLKQLVAKNESL--------------------------------------EKVPLSK--------------------------------------------------VAKEVSGYSDFDLHQVCSGFDSLKHLCLSEETLFTSAKMERLRTLLPQLVSEGHRILLFSQWTRLLDLLEASAHVLLGDSMGMTFCRLDGSTPVSERKALIDKFGADT 597
            L +GTP+ NNL ELL LL FLMPE+F  D  ETL E      + ++ + +    V  V+ M+ PFVLRR K DVL +LV K++ +                                      +KV +SK                                                  V KE+S YSDF LHQ+C     L  L L  E + +SAK+ +L  +LP+L SEGHR+LLFSQWT +LD++E      L D     + RLDGST V ER+ L+D+F +DT
Sbjct:  283 LLTGTPINNNLPELLVLLQFLMPELFDPDD-ETLWEVFDEKVESESGNLARKVNVERVKKMIKPFVLRRCKCDVLGELVPKDQQVIQLDLPSEQRKVYNQIISNWEFKSKKDSSGGNTNAKAGDKVAMSKKMINNIFCELRKAANHPLLVRSRYNDEALKTIAHQLFVSGHFGNSCSLQQVEKEISDYSDFVLHQMCQDHKRLNKLSLKPEDISSSAKLRKLEEILPRLQSEGHRVLLFSQWTTMLDIIED----FLIDK-DYLYTRLDGSTAVKERQELLDRFNSDT 564
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BLAST of mRNA_Ecto-sp13_S_contig14836.3687.1 vs. uniprot
Match: E4X2S0_OIKDI (Uncharacterized protein n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4X2S0_OIKDI)

HSP 1 Score: 116 bits (291), Expect = 1.120e-26
Identity = 85/234 (36.32%), Postives = 125/234 (53.42%), Query Frame = 1 
Query:    1 LCSGTPVQNNLGELLALLSFLMPEIFR--SDVIETLLEFLGNNADEQASSSSSFQVREVRGMLAPFVLRRLKSDVLKQLVAK-----------------NE--SLEKVPLSKVAKEVSGY--------------SDFDLHQVCSGFDSLKHLCLSEETLFTSAKMERLRTLLPQLVSEGHRILLFSQWTRLLDLLEASAHVLLGDSMGMTFCRLDGSTPVSERKALIDKFGADT 597
            L +GTP+QNNL EL++L+ FLMP++ +  S+ ++ + + L N   E A      +V E R +L PF+LRR+KS+VLK L  K                 NE   L +  LS   K+  G               SDF +H+ C  + SLK   L ++ +  S K + L TLLP+L  EGHR+LLFSQ+  ++D++E         +  + + RLDGSTPV +R  +ID F AD+
Sbjct:  594 LLTGTPLQNNLLELVSLIKFLMPDLLQKSSNTLQRIFK-LRNQESEFAKK----RVAEARTILQPFILRRVKSEVLKDLPPKISEEVLVELTDNQKIFYNEIKGLLQCKLSTTEKKEQGIRDITNSFIQLRKCLSDFQIHETCEKYASLKKFRLKKDDILNSGKFKVLDTLLPKLFEEGHRVLLFSQFVIMMDIMERYM-----TARKIKYMRLDGSTPVEDRLDMIDTFNADS 817
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BLAST of mRNA_Ecto-sp13_S_contig14836.3687.1 vs. uniprot
Match: A0A2R5GFW3_9STRA (Helicase, putative n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GFW3_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.510e-26
Identity = 93/292 (31.85%), Postives = 132/292 (45.21%), Query Frame = 1 
Query:    1 LCSGTPVQNNLGELLALLSFLMPEIFRSDVIETLLEFLGNNADEQASSSSSFQVREVRGMLAPFVLRRLKSDVLKQLVAKNESLEKVPLSKVA------------------------------------------------------------------------------------------KEVSGYSDFDLHQVCSGFDS----LKHLCLSEETLFTSAKMERLRTLLPQLVSEGHRILLFSQWTRLLDLLEASAHVLLGDSMGMTFCRLDGSTPVSERKALIDKFGAD 594
            L SGTPVQNNL ELLAL+SF MP++F +   E L ++  N+AD +  +S    +  +R  + PFVLRRLK+DVL QL  K E ++ + ++ V                                                                                           KE+  YSD+D H +   F S    L+ + L +E L+TS+K  RLR LLP+LV E HR L+FSQWT LLD++E     +LG ++ +TF R DGST + +R+ +ID +  D
Sbjct:  544 LLSGTPVQNNLQELLALMSFCMPKVFNASS-ERLTDYF-NDADNRGQAS----IARIRDAMRPFVLRRLKADVLGQLSPKIEDVQLLEMADVQRKVYSEIIDAYRQKKSDARSGRRSRATDSATTHFFSQLRKAANHPLLVRQYFGKSAEDSPDGVSRPLPRFVELCDRVKAFGPAASVRMIEKEIKSYSDWDFHLLALEFGSRNAELRGMALPQEALWTSSKALRLRELLPKLVEEKHRFLIFSQWTTLLDVIEE----MLG-ALNITFVRFDGSTAIGDRQEIIDSYNTD 824
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BLAST of mRNA_Ecto-sp13_S_contig14836.3687.1 vs. uniprot
Match: A0A1V9YP31_9STRA (ATP-dependent helicase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YP31_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.040e-26
Identity = 94/304 (30.92%), Postives = 127/304 (41.78%), Query Frame = 1 
Query:    7 SGTPVQNNLGELLALLSFLMPEIFRSDVIETLLEFLGNNADEQASSSSSFQVREVRGMLAPFVLRRLKSDVLKQLVAKNESLEKVPL-------------------------------------------------------------------------------------------------------SKVAKEVSGYSDFDLHQVCSGFDS----LKHLCLSEETLFTSAKMERLRTLLPQLVSEGHRILLFSQWTRLLDLLEASAHVLLGDSMGMTFCRLDGSTPVSERKALIDKFGADT 597
            SGTP+QNNL ELL+LLSFLMP IF     E +++F        A         ++R +L PF+LRRLK +VL Q+V K E    + L                                                                                                       + V KE+  YSDFDLH++C+ +      L+ L L   TL  S K + LR LLP L ++GHR+L+FSQWT+LLDL+E     +L   +G  F RLDGST V++R+A+ID+F  DT
Sbjct:  500 SGTPIQNNLSELLSLLSFLMPTIFNHGS-EQMMDFF-------AGEPQGATCTKIRHILGPFILRRLKKNVLLQMVPKTEHTHVLTLPPAQRAVYDELVAAAVAAKDGDKAKAAARKAGGHRGAKREVRALLNLEANIFDGQNDAAIFTQLRKAANHPILLRHHFRSPEKMDTLGAQLYQLGAFGNQCTRAMVDKEIESYSDFDLHELCAQYGDVSPELRALQLPVATLLDSVKFDHLRALLPPLHADGHRVLIFSQWTKLLDLIE-----VLMAHLGFKFLRLDGSTNVADRQAMIDEFNDDT 790
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BLAST of mRNA_Ecto-sp13_S_contig14836.3687.1 vs. uniprot
Match: A0A7S3US29_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3US29_HETAK)

HSP 1 Score: 111 bits (278), Expect = 2.360e-26
Identity = 58/107 (54.21%), Postives = 73/107 (68.22%), Query Frame = 1 
Query:  265 LSKVAKEVSGYSDFDLHQVCSGFDSLKHLCLSEETLFTSAKMERLRTLLPQLVSEGHRILLFSQWTRLLDLLEASAHVLLGDSMGMTFCRLDGSTPVSERKALIDKF 585
            L+ V KE+ GYSD+DLH +C+    L    L E+T+  SAK  +L  LLPQ+  +GHR+LLFSQWTR+LDLLE    V L   +GM F RLDGST V  R+ALI+KF
Sbjct:   60 LAMVRKEIEGYSDYDLHHLCAQHPELGKYELGEDTIMNSAKFRKLEELLPQMQKDGHRVLLFSQWTRILDLLE----VFLQSRLGMGFLRLDGSTDVKSRQALIEKF 162
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14836.3687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSU0_ECTSI1.020e-11396.00Similar to helicase, lymphoid-specific isoform 9 n... [more]
A0A6H5KRD4_9PHAE7.400e-9554.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z3Y7_9STRA1.000e-3834.98SNF2 family N-terminal domain-containing protein n... [more]
L1I6R2_GUITC2.470e-3540.18Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A7S0H4N3_9CRYP8.550e-3234.02Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S4UGD6_GUITH5.660e-3033.68Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
E4X2S0_OIKDI1.120e-2636.32Uncharacterized protein n=1 Tax=Oikopleura dioica ... [more]
A0A2R5GFW3_9STRA1.510e-2631.85Helicase, putative n=1 Tax=Hondaea fermentalgiana ... [more]
A0A1V9YP31_9STRA2.040e-2630.92ATP-dependent helicase n=1 Tax=Achlya hypogyna Tax... [more]
A0A7S3US29_HETAK2.360e-2654.21Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14836contigEcto-sp13_S_contig14836:223..4318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score356.7
Seed ortholog evalue7.1e-96
Seed eggNOG ortholog2880.D8LSU0
Preferred nameSMARCAD1
Model size597
KEGG koko:K14439
KEGG Pathwayko04550,map04550
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000122,GO:0000166,GO:0000183,GO:0000228,GO:0000729,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005720,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006357,GO:0006464,GO:0006476,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009117,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010225,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0016043,GO:0016363,GO:0016458,GO:0016462,GO:0016569,GO:0016570,GO:0016575,GO:0016584,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0019637,GO:0022402,GO:0022607,GO:0023051,GO:0023056,GO:0030466,GO:0030554,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031507,GO:0031934,GO:0031974,GO:0031981,GO:0032015,GO:0032017,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034399,GO:0034401,GO:0034641,GO:0034644,GO:0034724,GO:0034728,GO:0035601,GO:0035639,GO:0035861,GO:0036094,GO:0036211,GO:0040029,GO:0042623,GO:0042766,GO:0043044,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043596,GO:0043933,GO:0043954,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0046578,GO:0046579,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051056,GO:0051057,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051259,GO:0051260,GO:0051276,GO:0051304,GO:0051716,GO:0055086,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0070827,GO:0070828,GO:0070829,GO:0070868,GO:0070869,GO:0070870,GO:0070932,GO:0070933,GO:0071103,GO:0071214,GO:0071478,GO:0071482,GO:0071494,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0097367,GO:0097549,GO:0098687,GO:0098732,GO:0104004,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902531,GO:1902533,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001141
Exons4
EggNOG free text desc.helicase activity
EggNOG OGsKOG0389@1,KOG0389@2759
Ec32 ortholog descriptionSNF2-related helicase domain protein
Ec32 orthologEc-15_002620.1
EC3.6.4.12
Cds size597
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462791.7281299-CDS-Ecto-sp13_S_contig14836:222..3811681462791.7281299-CDS-Ecto-sp13_S_contig14836:222..381Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14836 223..381 +
1681462791.7410874-CDS-Ecto-sp13_S_contig14836:914..10281681462791.7410874-CDS-Ecto-sp13_S_contig14836:914..1028Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14836 915..1028 +
1681462791.7503052-CDS-Ecto-sp13_S_contig14836:3427..36491681462791.7503052-CDS-Ecto-sp13_S_contig14836:3427..3649Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14836 3428..3649 +
1681462791.7591083-CDS-Ecto-sp13_S_contig14836:4216..43181681462791.7591083-CDS-Ecto-sp13_S_contig14836:4216..4318Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14836 4217..4318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14836.3687.1prot_Ecto-sp13_S_contig14836.3687.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14836 223..4318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14836.3687.1

>prot_Ecto-sp13_S_contig14836.3687.1 ID=prot_Ecto-sp13_S_contig14836.3687.1|Name=mRNA_Ecto-sp13_S_contig14836.3687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=199bp
LCSGTPVQNNLGELLALLSFLMPEIFRSDVIETLLEFLGNNADEQASSSS
SFQVREVRGMLAPFVLRRLKSDVLKQLVAKNESLEKVPLSKVAKEVSGYS
DFDLHQVCSGFDSLKHLCLSEETLFTSAKMERLRTLLPQLVSEGHRILLF
SQWTRLLDLLEASAHVLLGDSMGMTFCRLDGSTPVSERKALIDKFGADT
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mRNA from alignment at Ecto-sp13_S_contig14836:223..4318+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14836.3687.1 ID=mRNA_Ecto-sp13_S_contig14836.3687.1|Name=mRNA_Ecto-sp13_S_contig14836.3687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4096bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14836:223..4318+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTGTAGCGGAACCCCCGTTCAGAACAACCTCGGGGAGTTGCTGGCCCT
TCTGTCTTTCCTCATGCCGGAAATATTCCGGAGCGACGTGATCGAGACGC
TGCTGGAGTTCCTGGGCAACAACGCTGACGAACAGGCGTCCTCTTCTTCT
TCCTTCCAGGTCCTCCTTGTCACCTTTTTTGTCTTATTCTTGTCAGTTTG
TCTTAACTAGATTCCCTCTTCGTCTTCGAGCGCTTGTCATGTTGCTTGTC
TTTGTGCCACTTTGTCTTAATGCGGCGCCTTGTACGCCCCTTCATTGTCG
TCATGTCCTTGGTCTTACTTTTGTCAGTTTTTATTAACCCGACGCCCTCT
TCATCTCTCCAGGTTCTCCTTGTCATCTTATTTCTTAGTGTGCCCGTTTG
TCTCAACGTGTCCGGTTGTCTTAGCGCGGCGTTCTCTTCATTGCAGGCCC
TCCTTGTCACATGATTTTTGTCAGCTTTTCTGTTTTTCGAACATTTTTTT
GTTATCGATGATGTCGTTACTGTGCGGTGTTGTTTTTATGATCTTCCATC
GCAAAAGTGGGATGCTTTCTGTCTCCATCTCTGTTTCTCTCTTTCATGTC
ATCCTCCGAACACACAATGCCAAAGATTGCCCTGCTTTTCGCTGGTTGTG
GGTGTTTTGACTTTTTTTTTTTTTTCTCACCTGGCTTTTTAGGTGCGGGA
GGTGCGGGGTATGCTAGCACCGTTTGTGCTCCGGCGCCTCAAGTCGGACG
TCTTGAAGCAGCTCGTGGCCAAAAACGAGAGCCTCGAGAAAGTGCCGCTT
TCGAAGGTAAGAAACAGAAGGATACTGTAGTTATAGAATGGTAGTGTTGC
ATCTACGCCGTCTATGCAGACTGCCGTAGGTGACATACGATAACACACCC
CCCGGACCGATTTTCAAAGCTCAACTACTCCACGACGAAATGTATGTCCA
AGTCAAACCATACGTTTTCCGGAAAGATCTCGACGACACCGTTCCAACGC
CGCTGTATTTGACACCGCCACCCTTTTTGCTGTGGAGCAATAGAGCTTCC
AAAATCGATCTTGGGGGTGTGGTATCTTGTGTCACCTACGGTAGGCGTAG
GCCTAGCTTGTGAAGCGCTCGAGCTTGTCTGGTTGCTGCTTGGAGGCATC
TATGGTGCAGAAGATAACGGCGTAGTTTTGGAATCTTTTTAAGTTACAGC
AGTCTGCTTGCAGCTTGCAGGCATCTGTGCATACTATCGTGCCGGCCTAG
CTTACGAACCTTCACGTTTGGCTGGTTGCAGCTTGGAGGCATCTATGCAG
ACGATATGTCGGCCTACTTTTTACTGCAATCTTTCAAATTCTCATTAGTC
TGGTCGCACATTACAAGGTACTCCGTTTGTTTGCGCCCACGCAACAGTGC
AGCGTGCCTTTGTCTATCCATCCCCCAACCGATAATTCGTTTTCCGTCGA
TGATACTCATGTGGTGTTGGGAACGACGACTGAACTGGCTGTTGTTTGAC
GAAATGCTCTGCTGTTTTTTTTTTTTTCACGTCAAAACCCACTCGCGGTC
GAGTCGTCCGTGCTGTGTCCTCGTAAGACAAACCACGAGCCACCCTCGAT
GATGCATCACACCTTCATGATCGACACGTCACCCCCCCCCCGCCGACTCC
TGCTGTGTCCTGAACCCTGCATGAATCGAAACGAAAGGTCCAGCGGTCTC
TGTACGACGGGGTGTTGGAGAACCACGTCCGTCAAAAACGAGCCGCCATC
GAGAGGGCCCTGGCCCAAGAACGCGCCTTGTTCGGCGGCGGCACCGTCAC
CGACCTCACCAGCAACGTCACTCGTAGCAGCGGCGGTGGCGGGGGGGAGA
AAGGAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAG
GGTGGTAGCGACGGGGGTTCGATTGATATTCTGGACGATGGTGTTGCCGG
CCGGAGGAGCGGGGGCCACGCGGATGGCGAGGGGGGGGGGGCGGATTTGC
TGGAGGAGGTCGGGATCAGCGCCAAGGAGTGCAAGAACATCTTCACCGAG
CTGAGGAAGGGCGCCAACCACCCCCTCATGCTGCTGAACCACTTCAAGGG
CGGCGGCAAGATGGAGAAGGTCGTCGAGGTGCTCCATAGGACGGGCTACT
TCGGCGGACAGGCTACCAAGGACATGGTGAGAATGGAAGCGGGGTTCCGC
ATGAAGGGCGTGACCTGGTGGAGGGTCGGGGGGATGTACTGATGTGCCGT
AGTCGTTAGACCAGTGACCCTCGCATTCCTACAATGCCGGGACGGAGCGA
TACGCCGGGTTTTGGCAGGCCCAGATTACGTTTCACAAGGATGAATCAGA
AGCCGGTTACTTTCTTGGCGTTTGCTGTGCCAAACTAGACATGCCATGCG
TTGATTGAGGCATCCGGCTCATCGAACATTTCGCATGGGATGGGTCATTT
TTTCGGCGTCATGATTTTGAATAGACTGGCTGCATCCCCACGGGGGAAGC
GTACGCAACATCTTTTGGGGGAACAGGGGTTTTGGGAAAGGGGAGGCATT
TTTTTTTTGCTTTCGTGATTCGTTTCACTGAGGTGGCCAAGGAGGCAGGA
GGGGGTATGTCCATGTGGATGACCCGGGCTAGTGCATCGAACGTATTCCG
ATACGTTGTAAACCCAAGTCTGACGAAAGAAACGAAATGCTACTGCTGCT
CTGTCTGCGCCTGGGTTGGCTCTATTCGTATGAAGCGTCCGGGGCAAGGC
TTAAACCCCGCTATATGTATAGCCCTACCTTTCAGCATCGTGTGTGGGTA
CAGTATTTACGTCGGCGTCTGGTTGTGCGGCCGTACTAGTTTTCTCGTGT
CCGGCGTCTCCGCCTATCTGACGTGCATTATCTGCTCTTCAAGTATAATT
TTTCCCCTCGCGGACGTAAAGTCCTTTCGTACATCACATATATCAGTCCC
ACATACACGTCCGTCCTCCTCTATCCATAGTAGTGGTTCTCTCGCGTGCG
GAACGTCCTACATTTTTCTCTCACGTACGAATACCTACGGTCCCATCTTT
CGTACGTCCCACCTACGTTAATTTTGTTCTGACTTACGAAACGCCCTATC
TTTCACACCCACGTACGTCTGTTTTTACCCTTACGTACGCCCGACAATCT
TACTCTCACGTACATAAACGTACGTACTTACGTGCGTTTTGCGTTTCTCG
CCCAGGTTGCGAAGGAAGTCTCGGGCTACTCGGACTTCGACCTTCACCAA
GTGTGCTCAGGGTTCGACAGCCTCAAGCACCTCTGCCTCTCGGAGGAGAC
GCTCTTCACCTCTGCCAAGATGGAGAGGCTGAGGACGCTGTTGCCGCAGC
TGGTGTCGGAGGGGCACCGGATACTCCTCTTCTCGCAGTGGACTCGACTG
TTGGACCTGTTGGAGGCAAGTGCGCATGTAGTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTGTTAGTGAGGCTGCTGTGGTTATTGGTGTTGGA
TGTCGGTTGTTAAGTAGGCGTCATGGCCATCGTTGCTACTGTATTGCAGC
GTCACCTGTCGCAGTGTGGCGGCTGCCGATGTGTCCATGTCGTGGTAGTC
GTCTTGGCACTTTTGCGCCTCTCTCGTGCATCCTATTGTGTGAGGTCGGT
GTGGGTATGGTAGAAAAACTTTTTGGCCAGCTGGACGGATCACCTTTCTC
GACCTCCCCCTCCCCCCCCGCCCCGCAATGCGTGCATGCGGTTGGAGGGG
ACTCCCTCACATCCTGCGGTTTGGATTTACCCCCTTCCCCGCCCCTGCCC
CCTGGCATGATATTTCTTCCCCATAACTAAATACCATTACATTAAGGAAG
ACCCAAAACAAGAAAAACTGAGCCCACGACCCAAATTTCGACACCCAACA
CCAACGACTATTGATTGTCTACATCAATGATCCCCGGGCATAATCAATAC
CGCCTCTCCGCTTTCACACCTCTTGGGCCACGGCCGCTCCGCAGGTGCTC
CTGGGAGACTCGATGGGGATGACTTTCTGCCGCCTGGATGGCTCCACGCC
GGTGTCCGAGCGCAAGGCCCTGATCGACAAGTTCGGCGCCGACACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14836:223..4318+

>mRNA_Ecto-sp13_S_contig14836.3687.1 ID=mRNA_Ecto-sp13_S_contig14836.3687.1|Name=mRNA_Ecto-sp13_S_contig14836.3687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14836:223..4318+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTGTAGCGGAACCCCCGTTCAGAACAACCTCGGGGAGTTGCTGGCCCT
TCTGTCTTTCCTCATGCCGGAAATATTCCGGAGCGACGTGATCGAGACGC
TGCTGGAGTTCCTGGGCAACAACGCTGACGAACAGGCGTCCTCTTCTTCT
TCCTTCCAGGTGCGGGAGGTGCGGGGTATGCTAGCACCGTTTGTGCTCCG
GCGCCTCAAGTCGGACGTCTTGAAGCAGCTCGTGGCCAAAAACGAGAGCC
TCGAGAAAGTGCCGCTTTCGAAGGTTGCGAAGGAAGTCTCGGGCTACTCG
GACTTCGACCTTCACCAAGTGTGCTCAGGGTTCGACAGCCTCAAGCACCT
CTGCCTCTCGGAGGAGACGCTCTTCACCTCTGCCAAGATGGAGAGGCTGA
GGACGCTGTTGCCGCAGCTGGTGTCGGAGGGGCACCGGATACTCCTCTTC
TCGCAGTGGACTCGACTGTTGGACCTGTTGGAGGCAAGTGCGCATGTGCT
CCTGGGAGACTCGATGGGGATGACTTTCTGCCGCCTGGATGGCTCCACGC
CGGTGTCCGAGCGCAAGGCCCTGATCGACAAGTTCGGCGCCGACACG
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