mRNA_Ecto-sp13_S_contig14802.3664.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14802.3664.1
Unique NamemRNA_Ecto-sp13_S_contig14802.3664.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14802.3664.1 vs. uniprot
Match: A0A6H5KT10_9PHAE (DUF4440 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT10_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 1.200e-72
Identity = 140/148 (94.59%), Postives = 143/148 (96.62%), Query Frame = 1 
Query:    1 VGSATDVVVKTVKAVAEASVQTAPSSPVEDDEVTPEASPAFVCVPPAMQDSSCGTGYTAATAAADQKTWRDLNNRVSNLLLEEERSLRAKQIADLQHHANQLVELQKRAVAAKARAAERXXXXXXXXKIRAKREMELVKRAEKAKVGN 444
            VGSATDVVVKTVKAVAEASVQTAPSSPVE+DE TPE SPAFVCVPPAM DSSCGTGYTA TAAADQKTWRD NNRVSNLLLEEERSLRAKQIADLQHHA+QLVELQKRAVAAKARAAERXXXXXXXXK+RAKREMELVKRAEKAKVGN
Sbjct:  356 VGSATDVVVKTVKAVAEASVQTAPSSPVENDEFTPETSPAFVCVPPAMPDSSCGTGYTAVTAAADQKTWRDFNNRVSNLLLEEERSLRAKQIADLQHHADQLVELQKRAVAAKARAAERXXXXXXXXKVRAKREMELVKRAEKAKVGN 503
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BLAST of mRNA_Ecto-sp13_S_contig14802.3664.1 vs. uniprot
Match: D7FYA8_ECTSI (Similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA8_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 7.310e-72
Identity = 139/145 (95.86%), Postives = 144/145 (99.31%), Query Frame = 1 
Query:    1 VGSATDVVVKTVKAVAEASVQTAPSSPVEDDEVTPEASPAFVCVPPAMQDSSCGTGYTAATAAADQKTWRDLNNRVSNLLLEEERSLRAKQIADLQHHANQLVELQKRAVAAKARAAERXXXXXXXXKIRAKREMELVKRAEKAK 435
            VGSATDVVVKTVKAVAEASVQTAPSSPVEDDEVTPEASPAFVCVPPAM DSSCGTGYTAAT+AADQKTW+DLNNRVSNLLLEEERSLRAKQIADLQHHA+QLVELQKRAVAAKARAAERXXXXXXXXK+RAKRE+ELVKRAEKAK
Sbjct:  377 VGSATDVVVKTVKAVAEASVQTAPSSPVEDDEVTPEASPAFVCVPPAMPDSSCGTGYTAATSAADQKTWKDLNNRVSNLLLEEERSLRAKQIADLQHHADQLVELQKRAVAAKARAAERXXXXXXXXKVRAKREVELVKRAEKAK 521
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14802.3664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KT10_9PHAE1.200e-7294.59DUF4440 domain-containing protein n=1 Tax=Ectocarp... [more]
D7FYA8_ECTSI7.310e-7295.86Similar to Uncharacterized protein conserved in ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14802contigEcto-sp13_S_contig14802:1669..3482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size447
Hectar predicted targeting categoryother localisation
Exons2
Cds size447
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462790.0453427-CDS-Ecto-sp13_S_contig14802:1668..19141681462790.0453427-CDS-Ecto-sp13_S_contig14802:1668..1914Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14802 1669..1914 -
1681462790.058896-CDS-Ecto-sp13_S_contig14802:3281..34821681462790.058896-CDS-Ecto-sp13_S_contig14802:3281..3482Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14802 3282..3482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14802.3664.1prot_Ecto-sp13_S_contig14802.3664.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14802 1669..3482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14802.3664.1

>prot_Ecto-sp13_S_contig14802.3664.1 ID=prot_Ecto-sp13_S_contig14802.3664.1|Name=mRNA_Ecto-sp13_S_contig14802.3664.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
VGSATDVVVKTVKAVAEASVQTAPSSPVEDDEVTPEASPAFVCVPPAMQD
SSCGTGYTAATAAADQKTWRDLNNRVSNLLLEEERSLRAKQIADLQHHAN
QLVELQKRAVAAKARAAERAVERAAERKIRAKREMELVKRAEKAKVGN*
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mRNA from alignment at Ecto-sp13_S_contig14802:1669..3482-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14802.3664.1 ID=mRNA_Ecto-sp13_S_contig14802.3664.1|Name=mRNA_Ecto-sp13_S_contig14802.3664.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1814bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14802:1669..3482- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGGGTCTGCCACCGACGTGGTCGTCAAGACCGTCAAGGCCGTAGCCGA
AGCCTCGGTGCAGACCGCGCCGTCTTCTCCCGTGGAGGATGATGAGGTCA
CTCCCGAGGCTTCTCCGGCGTTCGTCTGCGTACCCCCCGCGATGCAAGAC
TCGTCCTGTGGTACGGGGTACACCGCCGCGACCGCCGCCGCCGACCAGAA
GGTACGTAGCACACCCTTCTGCTTTTGCGACTAGGGTGTTCTTGTTGTTT
GCGATGGCGTGAGGGGAAAAGTACATGCTTTCGCCGACCAGACGGTGCAT
CAACAGTCACGTTTTGAGACCCGTTTTTGCTGTTGTTGTTGTTGTTGCTG
TTGTTGTTGTTTACGATGACATCAGCGGGAAAAATGCATTCTCCCGACCA
ATCAGAAGGTGCGTCAAGAACCTGTTTTGAGACTCGTTGTTTTTCGTGGT
GGCATGAGCCGGGAAAATACGTACTTTCGGCCGATCAGAAAAGTTTGTAA
CAACAAGGTTATCGTTCACTTTTTGGTGGCTGTTTGTGTTGACTTGAGGA
TGAAATCATCCTTGATTTGCCGTGCTGCTCATCTACCGCACCAGGCACCG
CGTGCGTTTTGATTTGGCACGACTGTCCCGTAAAAACAGTCTGCCAACAT
GTGTCAGATTCCGGTGCGCACCATATTTAGCTCCTTTCGCCAAGATACGT
CGGGGTTCCGGCGTTTCTTGATGCCGGCGAAAAGTCTCGCCGGCATGCTC
GCTCGCTCGCAGAGCTGCCCAAGTCACGGTGTATCCCCCTCTGCTGCTTG
TTCTTGGAATCATCTTGCCGTACTGCGAGACGCTTTCTTTTTCCTTGTTT
TTGTCGAGATCCGATTCCAGGTACATAGCTCCGTGAGAAGTCGTTGTTGG
CGGACCAAAGCGGGGTGTACGTCCGTTGTTTATGGCCACGCCTTCAATCT
AGAGTCTCTTCGCTGAAAAGCCTGACAGGGTTGCAAGTCGTGTGGCGACC
CGTTTGTTTCTTGCTCCTGTTTAGAGGACCGTTGGGGCATACCGTGCATC
GCCCCGTGGATAGAAGCCCTACATGCCGTAGGTGTCATCATATGTGACAC
CCCCTGGGTTGATTCTCACAGCTCCACTATTTGACGACGAGGAGGATGCA
CGAGTCAAACGATACCTTTTCGGAAAGCTCTCGACGAGAGGGCTGGAAGT
CATTCCACCGGGTGTGGTATCTTATGTCACCTACGGCAGTCGAGCACAAC
CGTCTCGAACCTCTTCCCCGCGCCTCCATCGACAGCACCCACCCTCTTGT
TATTCTACCGCTGCTACCGTCCTTGTGCTTCTGAGACAGGCGTACATACC
ATGTGAAATAAAAGTAGGCCGGGGAAATGCCCGCACAACGAACACGTGTC
ACACCTCATGTCTCGTAGAACAGGATCTTGTCTAGCTCCCGCTCCTTCTT
TAGTCACATTCACATGTACAAGTGTAAGATAACACACCTAGGTCCTTCGA
AAATCGTGCCTCAACTCTAGCTCCGGCTCCATGCTGCCCACCGACGCTCT
GTCTGTCCGCCGGAACAGACGTGGAGGGACCTCAACAATCGAGTCTCGAA
CCTCCTTCTAGAGGAAGAGCGCTCCTTGCGAGCGAAGCAGATCGCGGACC
TACAGCACCACGCCAACCAGCTCGTCGAGCTACAGAAGCGCGCCGTGGCC
GCCAAGGCCAGGGCGGCGGAGCGCGCGGTGGAGCGCGCAGCAGAAAGAAA
GATCCGGGCCAAGCGTGAGATGGAGCTGGTGAAGCGCGCCGAGAAGGCGA
AGGTGGGAAACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14802:1669..3482-

>mRNA_Ecto-sp13_S_contig14802.3664.1 ID=mRNA_Ecto-sp13_S_contig14802.3664.1|Name=mRNA_Ecto-sp13_S_contig14802.3664.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14802:1669..3482- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGGGTCTGCCACCGACGTGGTCGTCAAGACCGTCAAGGCCGTAGCCGA
AGCCTCGGTGCAGACCGCGCCGTCTTCTCCCGTGGAGGATGATGAGGTCA
CTCCCGAGGCTTCTCCGGCGTTCGTCTGCGTACCCCCCGCGATGCAAGAC
TCGTCCTGTGGTACGGGGTACACCGCCGCGACCGCCGCCGCCGACCAGAA
GACGTGGAGGGACCTCAACAATCGAGTCTCGAACCTCCTTCTAGAGGAAG
AGCGCTCCTTGCGAGCGAAGCAGATCGCGGACCTACAGCACCACGCCAAC
CAGCTCGTCGAGCTACAGAAGCGCGCCGTGGCCGCCAAGGCCAGGGCGGC
GGAGCGCGCGGTGGAGCGCGCAGCAGAAAGAAAGATCCGGGCCAAGCGTG
AGATGGAGCTGGTGAAGCGCGCCGAGAAGGCGAAGGTGGGAAACTGA
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