mRNA_Ecto-sp13_S_contig148.3662.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig148.3662.1
Unique NamemRNA_Ecto-sp13_S_contig148.3662.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig148.3662.1 vs. uniprot
Match: D7FNM5_ECTSI (SET domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNM5_ECTSI)

HSP 1 Score: 721 bits (1861), Expect = 2.590e-256
Identity = 390/444 (87.84%), Postives = 396/444 (89.19%), Query Frame = 3
Query:  261 MTWDVRLALALLEATSDPQVGGKFWHVYGRLLPQPHTVTVPFCLPERLLGQLHNSGMAERARKQVERVRCLYPDLMQTLLSHPKTAVYAARRTAEGEATVAAGEAATAAATKEAAEKETDAVPMALLWAFAMVRSRAFAADGDRFAFVPFLDMANHGFADPAANFTYISGGKSQPGVFQLQAMRSISAGEEVTISYGEQLNAEQLMVQYGFPAPPNVPLERPLCGSDALVRDTVAVAMKEGKETAGAATATAAAGEGVVGGGDAAGLPTAAAQEEGEERGSRGALSEAERVGLMNELFLRAQQRFAREAGGDELRFEIGARKVLPLVPPIATKIGELMGDGEDGMIKGAERYLEELQAYRSENFPSTEEQDRELLSYCLGNGRGKVDPRLADVVRYRLGRKEAHSTAAGILEEFTAPSPPALSTPPA---GDATDPPQEAQEEE 1583
            MTWDVRLALALLEATSDPQVGGKFWHVYGRLLPQPHTVTVPFCLPERLLGQLHNSGMAERARKQVERVR LYPDLM+TLLSHPKTAVYA R+TAEGEA  AAGE ATAAATKEAAEKETDAVPMALLWAFAMVRSRAFAADGDRFAFVPFLDMANHGFADPAANFTYISGG+SQPGVFQLQAMR+ISAGEEVTISYGEQLNAEQLMVQYGFPAPPNVPLE PLCGSDALVRDTVAVA +E KETAGAATATA     V                    RGSRGALSEAERVGLMNELFLRAQQRFAREAGGDE RFEIG RKVLPLVPPIATKIGELMGDGEDGMIKGAE YLEELQAYRSENFPSTEEQDRELLSYCLGNGRGKVDPRLADVVRYRLGRKEAHSTAAGILEEFTAP+P           GDAT PPQEAQEEE
Sbjct:    1 MTWDVRLALALLEATSDPQVGGKFWHVYGRLLPQPHTVTVPFCLPERLLGQLHNSGMAERARKQVERVRSLYPDLMRTLLSHPKTAVYATRKTAEGEAAAAAGETATAAATKEAAEKETDAVPMALLWAFAMVRSRAFAADGDRFAFVPFLDMANHGFADPAANFTYISGGESQPGVFQLQAMRNISAGEEVTISYGEQLNAEQLMVQYGFPAPPNVPLELPLCGSDALVRDTVAVATEEVKETAGAATATAXXXXXVXXXXXXXXXXXXXXXXXXXXRGSRGALSEAERVGLMNELFLRAQQRFAREAGGDERRFEIGVRKVLPLVPPIATKIGELMGDGEDGMIKGAELYLEELQAYRSENFPSTEEQDRELLSYCLGNGRGKVDPRLADVVRYRLGRKEAHSTAAGILEEFTAPAPXXXXXXXXXXXGDATAPPQEAQEEE 444          
BLAST of mRNA_Ecto-sp13_S_contig148.3662.1 vs. uniprot
Match: A0A835YIR1_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIR1_9STRA)

HSP 1 Score: 229 bits (584), Expect = 3.600e-65
Identity = 120/239 (50.21%), Postives = 157/239 (65.69%), Query Frame = 3
Query:  177 GLYGQTDLCWEAAGDLRDPVSDEDFARGMTWDVRLALALLEATSDPQVGGKFWHVYGRLLPQPHTVTVPFCLPERLLGQLHNSGMAERARKQVERVRCLYPDLMQTLLSHPKTAVYAARRTAEGEATVAAGEAATAAATKEAAEKETDAVPMALLWAFAMVRSRAFAADGDRFAFVPFLDMANHGFADPAANFTYISGGKSQPGVFQLQAMRSISAGEEVTISYGEQLNAEQLMVQYGF 893
            GL GQTDLCW+ AGDLRDPV D  +A+G+TWDVRLALAL +AT+D  VGG+FW +YGRLLP PH VTVP CLP  LL ++ ++ +A RA+ Q +R+  L+P +MQT ++HP+TA Y+A                              ++P AL WAFA+VRSRAF+A  D+FAFVPFLDMANH  ++P ANFT+     S  G F+L A+  + A  +V ISYG+ L+  +L  QYGF
Sbjct:   29 GLQGQTDLCWDQAGDLRDPVDDTSYAKGLTWDVRLALALQDATADIAVGGQFWDLYGRLLPAPHEVTVPLCLPSALLKEMQHAQLARRAQAQKDRLSGLFPLMMQTHMAHPRTACYSAL-----------------------GPGVLQSLPFALQWAFALVRSRAFSAGNDQFAFVPFLDMANHN-SNPNANFTF----DSAIGSFKLTALTDVKADSQVYISYGQALDDGKLATQYGF 239          
BLAST of mRNA_Ecto-sp13_S_contig148.3662.1 vs. uniprot
Match: A0A7S4D535_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D535_HETAK)

HSP 1 Score: 182 bits (461), Expect = 1.620e-46
Identity = 102/240 (42.50%), Postives = 140/240 (58.33%), Query Frame = 3
Query:  174 QGLYGQTDLCWEAAGDLRDPVSDEDFARGMTWDVRLALALLEATSDPQVGGKFWHVYGRLLPQPHTVTVPFCLPERLLGQLHNSGMAERARKQVERVRCLYPDLMQTLLSHPKTAVYAARRTAEGEATVAAGEAATAAATKEAAEKETDAVPMALLWAFAMVRSRAFAADGDRFAFVPFLDMANHGFADPAANFTYISGGKSQPGVFQLQAMRSISAGEEVTISYGEQLNAEQLMVQYGF 893
            +GL GQ+D+ W  AGDLR    D   A+G+TWD+RLA+ALLEA S+ +  G FW VYG +LP PHTVT+P C P+ L  ++ N  M + A +Q  R+   YP L++    HPK  +Y                              T +VP AL+W FA+VRSR F+A  +RFAFVPFLDM NH +  P A+++Y     S    F L A++ I +G+E+ ISYG+ L+ + LMV+YGF
Sbjct:  136 RGLDGQSDMTWAVAGDLRADYPDLLRAQGLTWDLRLAVALLEAASEQRCAGGFWDVYGFMLPAPHTVTMPLCFPQELTAEVQNPFMMKAAGQQQVRLESHYPTLVKPNY-HPKLKIYQDLGM-------------------------TSSVPNALMWCFALVRSRCFSASPERFAFVPFLDMCNH-WVKPNADYSYNEATDS----FDLVALKPIRSGDEILISYGQGLSNDDLMVRYGF 344          
BLAST of mRNA_Ecto-sp13_S_contig148.3662.1 vs. uniprot
Match: R1CZ63_EMIHU (SET domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CZ63_EMIHU)

HSP 1 Score: 173 bits (439), Expect = 5.810e-44
Identity = 118/271 (43.54%), Postives = 147/271 (54.24%), Query Frame = 3
Query:  177 GLYGQTDLCWEAAGDLRDPVSDEDFARGMTWDVRLALALLEATSDPQVGGKFWHVYGRLLPQPHTVTVPFCLPERLLGQLHNSGMAERARKQVERVRCLYPDLMQTLLSHPKTAVYAARRTAEGEATVAAGEAATAAATKEAAEKETDAVPMALLWAFAMVRSRAFA-ADGDRFAFVPFLDMANHGFADPAANFTYISGGKSQPGVFQLQAMRSISAGEEVTISYGEQLNAEQLMVQYGFPAPPNVPLERPLCGSDA-LVRDTVAVAMKEG 983
            GL GQTDL W+AAGDLR+ V +  F RG TWDVRLALA+LEAT+    GG+ W  Y R LP PH ++ P CLP  LL +L    +A  A  + E +  LY  LM    +HP TA Y AR           GEAA               VP  L WA+A+V SR FA + GD F FVPFLDM  H  A P+ANFT       + G+  L+ +R ++AGEEVTISYG   ++ +   QYGF            C +DA L+ + VA A   G
Sbjct:  111 GLAGQTDLVWDAAGDLREEVGEAMFKRGATWDVRLALAVLEATAG--CGGELWDAYRRFLPLPHELSSPVCLPAELLAELREPAVASAAAARNELLADLYAPLMAHE-AHPATAGYVAR----------GGEAA------------RGLVPAPLSWAYALVSSRCFALSGGDTFGFVPFLDMCQHS-AVPSANFT-----SDERGIV-LRTLRPVAAGEEVTISYGGDYSSRRTFEQYGFVLSEG-------CAADATLLEEAVAAAAAAG 342          
BLAST of mRNA_Ecto-sp13_S_contig148.3662.1 vs. uniprot
Match: A0A0M0JQY2_9EUKA (Ribulose-bisphosphate carboxylase oxygenase large subunit n-chloroplast n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JQY2_9EUKA)

HSP 1 Score: 159 bits (402), Expect = 1.320e-38
Identity = 114/272 (41.91%), Postives = 149/272 (54.78%), Query Frame = 3
Query:  177 GLYGQTDLCWEAAGDLRDPVSDEDFARGMTWDVRLALALLEATSDPQVGGKFWHVYGRLLPQPHTVTVPFCLPERLLGQLHNSGMAERARKQVERVRCLYPDLMQTL---LSHPKTAVYAARRTAEGEATVAAGEAATAAATKEAAEKETDAVPMALLWAFAMVRSRAFA-ADGDRFAFVPFLDMANHGFAD-PAANFTYISGGKSQPGVFQLQAMRSISAGEEVTISYGEQLNAEQLMVQYGFPAPPNVPLERPLCGSDA-LVRDTVAVAM 974
            GL GQT++ WEAAGDLR+ V +E F RG TWDVRLALA+ EAT+     G FW  Y +L+P P ++T P CLP+ +L +L N  +    + +V+  R L+ DL  +L    +HP TA Y  R                            + +P  L +A+A+V SR FA ADGD FAFVPFLDMA H  AD P ANF       +Q G   L A+  +  GEEVTI+Y    ++EQL  QYGF     VP +   C  DA L+R T+  A+
Sbjct:  107 GLQGQTEVMWEAAGDLREEVGEELFQRGATWDVRLALAVYEATAGG--AGGFWDDYRKLMPPPPSMTHPLCLPQAMLPELQNVEL----QAKVQAKRALFQDLHPSLHAHATHPVTASYTNRGF------------------------PMEYIPRPLPYAYALVVSRCFAMADGDTFAFVPFLDMAQH--ADVPTANFRV----DAQDGA-TLTALADLKPGEEVTINYDPDYSSEQLFAQYGF-----VPSDG--CAKDAKLLRATLGAAI 334          
BLAST of mRNA_Ecto-sp13_S_contig148.3662.1 vs. uniprot
Match: A0A7S0NTJ5_9EUKA (Hypothetical protein n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NTJ5_9EUKA)

HSP 1 Score: 152 bits (385), Expect = 1.430e-36
Identity = 103/241 (42.74%), Postives = 129/241 (53.53%), Query Frame = 3
Query:  177 GLYGQTDLCWEAAGDLRDPVSDEDFARGMTWDVRLALALLEATSDPQVGGKFWHVYGRLLPQPHTVTVPFCLPERLLGQLHNSGMAERARKQVERVRCLYPDLMQTLLSHPKTAVYAARRTAEGEATVAAGEAATAAATKEAAEKETDAVPMALLWAFAMVRSRAFA-ADGDRFAFVPFLDMANHGFADPAANFTYISGGKSQPGVFQLQAMRSISAGEEVTISY-GEQLNAEQLMVQYGF 893
            GL GQTD   +AAGDLRD V +E F +G TWDVRLALA+ EAT+    GG FW  Y RLLP P   T    LP  LL +L +  + +R   +   +R LYP L  T   HP T+ YAA                         +   + VP+ L W +++V SR FA AD D FAFVPFLDM  H  A P+ANFT      S  G F L  +R + AGE VTISY G+  ++ ++   YGF
Sbjct:   71 GLIGQTDAMVDAAGDLRDEVGEEAFNQGATWDVRLALAVFEATAG--CGGPFWDEYRRLLPLPPFATAAASLPPVLLEELQDPVLQKRGLAKDALLRELYPSLA-THSVHPVTSSYAAM------------------------DAPLELVPLPLQWTYSLVVSRCFAMADEDTFAFVPFLDMCQHS-ASPSANFT------SSDGDFVLSTLRRMQAGEAVTISYDGDAYDSRRMFELYGF 277          
BLAST of mRNA_Ecto-sp13_S_contig148.3662.1 vs. uniprot
Match: A0A7S4F9T8_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F9T8_CHRCT)

HSP 1 Score: 151 bits (382), Expect = 1.750e-36
Identity = 111/295 (37.63%), Postives = 147/295 (49.83%), Query Frame = 3
Query:   45 WNVPFPNQEQGVESGGSQQRRRLLIASCRIRQ--------RPVTCTSFHG*--QGLYGQTDLCWEAAGDLRDPVSDEDFARGMTWDVRLALALLEATSDPQVGGKFWHVYGRLLPQPHTVTVPFCLPERLLGQLHNSGMAERARKQVERVRCLYPDLMQTLLSHPKTAVYAARRTAEGEATVAAGEAATAAATKEAAEKETDAVPMALLWAFAMVRSRAFA-ADGDRFAFVPFLDMANHGFADPAANFTYISGGKSQPGVFQLQAMRSISAGEEVTISY-GEQLNAEQLMVQYGF 893
            +N+     E  V  GG     R L A     Q        R +  T+       GL GQTD+  +AAGDLR  V ++ F RG TWDVRLALA+ EAT+    GG FW  Y +LLP P        LPE L+ +L +  + +RA+++   +  LYP L Q   +HP TA+Y           +  G                + +P  L W  +MV SR F+ AD D FAFVPFLDM  H  A P ANF+ +SG       F+L A+R I AGEE+TISY G +  + ++   YGF
Sbjct:  109 YNILPSGSESVVLRGGRGDDSRGLFAGKSFEQGEVLVRVPRDLLLTAHRSGVVSGLIGQTDVMLDAAGDLRSEVGEKMFERGATWDVRLALAVFEATAG--CGGPFWDRYRQLLPLPPFSMSAASLPEFLIDELQDPVLEQRAKQKASMLVSLYPALSQHA-AHPATAMY-----------IRMG-------------APLEMIPSPLAWCHSMVVSRCFSMADVDTFAFVPFLDMCQHAEA-PTANFSSVSGD------FELTALRPIEAGEEITISYDGNEYASRRMFELYGF 369          
BLAST of mRNA_Ecto-sp13_S_contig148.3662.1 vs. uniprot
Match: A0A7S1NQL8_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NQL8_9EUGL)

HSP 1 Score: 118 bits (295), Expect = 2.260e-26
Identity = 87/239 (36.40%), Postives = 111/239 (46.44%), Query Frame = 3
Query:  246 DFARGMTWDVRLALALLEATSDPQVGGKFWHVYGRLLPQPHTVTVPFCLPERLLGQLHNSGMAERARKQVERVRCLYPDLMQTLLSHPKTAVYAARRTAEGEATVAAGEAATAAATKEAAEKETDAVPMALLWAFAMVRSRAFAADGDRFAFVPFLDMANHGFADPAANFTYISGGKSQPGVFQLQAMRSISAGEEVTISYGEQLNAEQLMVQYGFPAPPNVPLERPLCGSDALVRDTV 962
            D     TWD+RLA+ LLEA         FW  YG L+    T+  P  L  +LL +L +  MA+ A +Q +R+R L+PD++          VYA                              +  P  L+W +A+VRSR F A    FAFVPFLDMANH    P A+F Y      Q   F L+A+R I   EEVTISYG   +  +L  QYGF  P   P +  L G D L  D V
Sbjct:    8 DIPADFTWDIRLAIKLLEAIDGRW--SPFWASYGELMQPYLTMANPMLLYPQLLVELQHEDMADAAVQQQQRLRDLFPDMVP--------GVYA----------------------------PAEEFPSPLMWTWALVRSRCFTAGEQAFAFVPFLDMANH-LEIPNADFEYAP----QDSCFYLRAVRQIRQNEEVTISYGAAYDNRRLFAQYGFVEPGGNPYDT-LPGMDGLPSDLV 202          
BLAST of mRNA_Ecto-sp13_S_contig148.3662.1 vs. uniprot
Match: A0A7S3SFS5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SFS5_9SPIT)

HSP 1 Score: 115 bits (288), Expect = 6.010e-26
Identity = 83/212 (39.15%), Postives = 106/212 (50.00%), Query Frame = 3
Query:  264 TWDVRLALALLEATSDPQVGGKFWHVYGRLLPQPHTVTVPFCLPERLLGQLHNSGMAERARKQVERVRCLYPDLMQTLLSHPKTAVYAARRTAEGEATVAAGEAATAAATKEAAEKETDAVPMALLWAFAMVRSRAFAA-DGDRFAFVPFLDMANHGFADPAANFTYISGGKSQPGVFQLQAMRSISAGEEVTISY-GEQLNAEQLMVQYGF 893
            TWDVRLALA++EAT+    GG FW  Y +LLP P  V+   CLP   +  L ++ + ++A     R+R LYP L  TL +HP T  Y  R                        E+    +P  L W  A+V SR F+  D D FAF PFLDMANH    P ANFT         G   L A+R +SAG+EVTI Y G   ++ +    YGF
Sbjct:    2 TWDVRLALAVMEATAG--AGGPFWDGYRQLLPLPPHVSNAACLPVGFIPMLCDAVLEKQAHDTRARLRKLYPTL-HTLSAHPATGFYEQRF----------------------GEEAVGYIPSPLDWCHALVVSRCFSTVDEDTFAFTPFLDMANHA-ETPTANFT-----TGPDGSMHLYALRDMSAGDEVTICYDGGSYSSRRFFELYGF 182          
BLAST of mRNA_Ecto-sp13_S_contig148.3662.1 vs. uniprot
Match: A0A7S2MSJ8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MSJ8_9STRA)

HSP 1 Score: 113 bits (282), Expect = 5.240e-23
Identity = 97/282 (34.40%), Postives = 127/282 (45.04%), Query Frame = 3
Query:   72 QGVESGGSQQRRRLLIASC--RIRQRPVTCTSFHG*-QGLYGQTDLCWEAAGDLRDPVSDEDFARGMTWDVRLALALLEATSDPQVG--GKFWHVYGRLLPQPHTVT-VPFCLPERLLGQLHNSGMAERARKQVERVRCLYPDLMQTLLSHPKTAVYAARRTAEGEATVAAGEAATAAATKEAAEKETDAVPMALLWAFAMVRSRAFAA--DGDRFAFVPFLDMANHGFADPAANFTYISGGKSQPGVFQLQAMRSISAGEEVTISYGEQLNAEQLMVQYGF 893
            +GV S G    R L I      +      C    G   GL GQTDL  E AGDLR+ +  + + R +TWD+RLAL LLEATS   +G  G+ W  Y  LLP  H    +P  LP  LL +L +  +  RA +    ++ + P+       HP  A                                  + P  L WA A V SR+F    D D FAFVPF D+ANH    P  NFT     ++    F L+A++ I AGEEVTI YG   +  ++   YGF
Sbjct:   58 KGVSSRGLIANRDLRIGETVLAVPIEACLCVQRRGSVSGLQGQTDLTMEVAGDLREELPGDAW-RTITWDIRLALGLLEATSGNNLGTPGELWDGYFHLLPPLHRGPHIPLVLPPALLPELQDLELTRRAERMSALLQDILPECTDPFC-HPAGA--------------------------NGGPPRMQSSP--LHWALAQVWSRSFTCGDDIDSFAFVPFFDLANHKDI-PNTNFTTEIHPEAGVECFVLKALQDIGAGEEVTICYGSH-DPARMFELYGF 307          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig148.3662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNM5_ECTSI2.590e-25687.84SET domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YIR1_9STRA3.600e-6550.21SET domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S4D535_HETAK1.620e-4642.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
R1CZ63_EMIHU5.810e-4443.54SET domain-containing protein n=1 Tax=Emiliania hu... [more]
A0A0M0JQY2_9EUKA1.320e-3841.91Ribulose-bisphosphate carboxylase oxygenase large ... [more]
A0A7S0NTJ5_9EUKA1.430e-3642.74Hypothetical protein n=2 Tax=Calcidiscus leptoporu... [more]
A0A7S4F9T8_CHRCT1.750e-3637.63Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A7S1NQL8_9EUGL2.260e-2636.40Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S3SFS5_9SPIT6.010e-2639.15Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S2MSJ8_9STRA5.240e-2334.40Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig148contigEcto-sp13_S_contig148:31340..35461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score728.8
Seed ortholog evalue1.5e-207
Seed eggNOG ortholog2880.D7FNM5
Model size1983
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.peptidyl-lysine monomethylation
EggNOG OGsKOG1337@1,KOG1337@2759
Cds size1326
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig148.3662.1prot_Ecto-sp13_S_contig148.3662.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig148 31737..35201 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462789.7425747-UTR-Ecto-sp13_S_contig148:31339..317361681462789.7425747-UTR-Ecto-sp13_S_contig148:31339..31736Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig148 31340..31736 -
1681462789.8041255-UTR-Ecto-sp13_S_contig148:35201..354611681462789.8041255-UTR-Ecto-sp13_S_contig148:35201..35461Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig148 35202..35461 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462789.7520802-CDS-Ecto-sp13_S_contig148:31736..319351681462789.7520802-CDS-Ecto-sp13_S_contig148:31736..31935Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig148 31737..31935 -
1681462789.7600725-CDS-Ecto-sp13_S_contig148:32230..324001681462789.7600725-CDS-Ecto-sp13_S_contig148:32230..32400Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig148 32231..32400 -
1681462789.7681093-CDS-Ecto-sp13_S_contig148:32768..331521681462789.7681093-CDS-Ecto-sp13_S_contig148:32768..33152Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig148 32769..33152 -
1681462789.7761226-CDS-Ecto-sp13_S_contig148:33585..337051681462789.7761226-CDS-Ecto-sp13_S_contig148:33585..33705Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig148 33586..33705 -
1681462789.785805-CDS-Ecto-sp13_S_contig148:34054..343901681462789.785805-CDS-Ecto-sp13_S_contig148:34054..34390Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig148 34055..34390 -
1681462789.795437-CDS-Ecto-sp13_S_contig148:35084..352011681462789.795437-CDS-Ecto-sp13_S_contig148:35084..35201Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig148 35085..35201 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig148.3662.1

>prot_Ecto-sp13_S_contig148.3662.1 ID=prot_Ecto-sp13_S_contig148.3662.1|Name=mRNA_Ecto-sp13_S_contig148.3662.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=442bp
MTWDVRLALALLEATSDPQVGGKFWHVYGRLLPQPHTVTVPFCLPERLLG
QLHNSGMAERARKQVERVRCLYPDLMQTLLSHPKTAVYAARRTAEGEATV
AAGEAATAAATKEAAEKETDAVPMALLWAFAMVRSRAFAADGDRFAFVPF
LDMANHGFADPAANFTYISGGKSQPGVFQLQAMRSISAGEEVTISYGEQL
NAEQLMVQYGFPAPPNVPLERPLCGSDALVRDTVAVAMKEGKETAGAATA
TAAAGEGVVGGGDAAGLPTAAAQEEGEERGSRGALSEAERVGLMNELFLR
AQQRFAREAGGDELRFEIGARKVLPLVPPIATKIGELMGDGEDGMIKGAE
RYLEELQAYRSENFPSTEEQDRELLSYCLGNGRGKVDPRLADVVRYRLGR
KEAHSTAAGILEEFTAPSPPALSTPPAGDATDPPQEAQEEE*
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mRNA from alignment at Ecto-sp13_S_contig148:31340..35461-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig148.3662.1 ID=mRNA_Ecto-sp13_S_contig148.3662.1|Name=mRNA_Ecto-sp13_S_contig148.3662.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4122bp|location=Sequence derived from alignment at Ecto-sp13_S_contig148:31340..35461- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCCTTGGTGTCACGTGTAAAAGCCTCAAAGTAGAGTACCCTGTGGAAT GTCCCATTCCCGAACCAAGAACAGGGCGTCGAGAGTGGCGGCTCTCAGCA ACGAAGGAGACTCTTGATTGCGTCTTGTCGAATAAGGCAAAGACCAGTTA CATGCACCTCCTTTCATGGTTGACAGGGCCTCTATGGCCAGACCGACCTC TGCTGGGAAGCCGCGGGGGACCTAAGGGACCCGGTTTCTGACGAAGACTT TGCCCGTGGCATGACCTGGGACGTACGGCTGGCGCTAGCCCTGCTTGAGG CGACGTCAGACCCTCAGGTCGGCGGAAAGTTCTGGCATGTCTACGGCCGC TTGCTGCCTCAGCCACACACGGTGACGGTGAGAGCAGAATGGTTGGTACA TGATAGTTGTGACTCGCGGGTTTTTGTCATCCTTCGCCCGGAGTTGGCGA AAGTAACGGCTCGACCTTAATTTCAACTGCGCTTCGTAGCGTATTCGTCT GCTGTGCCGCTTGCGGCCGGTAGCTGAGGCACCCGAATCGCGTACAATCA CACGAAATCCTCTTGACGGGGCAAAAAGCTGTTGGGCGAGTTTCAGACTT GCGTGGCGAAAGGTGGCACGCGCTACCCGATTGATATTCTTGAGGCCGTT GGTTTTCTCCTTGGTGGCGCATGTACGGTCTTTTTGATCACGCGAGGAAG CACGCAAAAACGTCAGGTGCAGAAATCGGCTTGTCTAGAGCTATGGCGTC CAGGTAGGTCTGCCCACGGTGCCGGCAGAGAAGACAATTTTTCTGGCGTC AAAAGCCTCGGAATTCACCTGTTGTCGCGATCTTTCCTCTTGACGGTGCG CGTCAAAGCATCTACAAGTGGTTTTTTCGAGGATTCACACGCGGCACACT TCACACACCGATGATGATGCGCATTCTGCGCGATGGAAAACCCGCGCCTT GACCGTTTGCCTATCGATCTTGTCCCAGCTTGTGGTGGGTCTAATCTTGA ACCGCACACCCGTCCCCCATATTTTCCCTTCTCTCCACCCTTCTTGGCGT TTTCCTGGCATACCCCTTGAGGTACCCTTCTGCCTGCCGGAGCGCCTCTT GGGCCAGCTACACAACAGCGGGATGGCCGAGCGGGCTCGGAAGCAGGTCG AGCGGGTGCGCTGTCTGTACCCGGACCTGATGCAGACGCTGCTCTCTCAC CCCAAGACAGCCGTGTACGCGGCTAGGAGGACTGCCGAAGGCGAGGCGAC GGTAGCAGCAGGAGAAGCAGCAACAGCAGCGGCCACAAAAGAAGCGGCAG AAAAGGAGACGGATGCGGTGCCGATGGCTCTGCTTTGGGCGTTCGCGATG GTGCGGAGCAGGGCGTTCGCGGCCGACGGCGATCGATTCGCGTTCGTGCC CTTTCTGGTGCGTCTGAAACGGGGGCGAGGCGTACCCGAGGGGGGGAGTG GCGAATGGTCGGAGGCGCTGTTCCAGCCCGCTTTATCGCCGTCTTGCTTC CTTGCGTATTATGTTATTCGTTTGGCTCTCGTAGAGCCGCTGACTACGGA TGGACATGACAAAATGCGGACCCTCTATTGAAACATTTTGCAGGAAGCGC GAAAAGACGGTGCAACGCCCTCTACTGTGGAGATCCTCTTGGTTGCGACT GATCGGTCGACCCAAGAATTGTGGTGGCGGAGATTATTTTTCGATTGATC AACAGTACGTACACCTTGTCCAGCGTTTCAACCCTTTGAATTTTGACCGA CAACAGGACATGGCCAACCACGGCTTCGCTGATCCGGCCGCGAACTTCAC GTACATTAGTGGAGGAAAATCACAACCGGGCGTGTTCCAGCTCCAAGCGA TGCGCAGTATCAGCGCCGGGGAAGAGGTGAGAGAGAAATGCCGACCCTAG AAAACAACTCGCACAACAGCAGTTTATTTCTCGAGAACCTATGTCAAGCG CAAGTTGGCGGTACGCTTCTTCTCCACACCCCCTGTCGTGGCTCAATGTA TTTTTCGAGTGCGGGGATGACGCGGAGACCACACGACGTTTTTGGCATTC TACTCGTCATTTATTGATCAGATTGTCTCTTTCAGTTGGACGTGCACAGA TGTAAGCAGAGGAACAATTGAGCCGAACAGTCAGCAACACCGATAGAGGT TCCTGATCAAGTCACGGCCATGGGGCGATGCTTCATGATGTTTGATTCGA CCTCTCCTGGCGTACTCGCTCCACCTGGTAAGACTGGCTGCGGCATGCCG GACGGAGAGCTCTTGCTCACGCGCACCCCTCCCCCGTTCGCGTTTGTTGT ACGAAACAGGTTACCATTTCGTACGGAGAACAGCTGAATGCCGAGCAGCT GATGGTGCAGTACGGCTTCCCCGCGCCCCCGAACGTGCCGCTCGAGCGTC CGCTGTGTGGCTCGGACGCTCTCGTCCGAGACACCGTAGCGGTGGCCATG AAGGAGGGAAAAGAGACGGCGGGAGCGGCGACCGCGACGGCAGCTGCGGG TGAAGGCGTTGTCGGAGGCGGGGATGCGGCGGGTCTCCCTACGGCGGCGG CCCAAGAAGAGGGGGAAGAACGAGGGTCGCGGGGTGCGTTGTCTGAGGCG GAAAGGGTAGGGCTGATGAACGAGCTGTTCCTACGCGCGCAGCAGCGGTT CGCGAGGGAGGCCGGTGGTGACGAGCTACGGTTTGAGATAGGGGTGAGTT TGTTTGTTGTCGGCCCGGTGTATATCGTGCATGTGGTGTGTAGCGGCCGC ATGTTTTTCTTCGGCTGCCGTCATCGACCGCTCTAACCGGCAACCATACT AGTAAAACAATGGAAGTTTGAGTTTTTTGTTCCTGTCAACAAAAAAGAAT AAGAAACAGCTGTGCGTTATACTTTTGGTGTCTCACCGGTTCATGTTTTC CGGTGGAGACAGCGTGATTTTGCAGGTAACTCCTGCCGAAAGTCCCACCT CTCTGATCGGCGCTGAATGTGACTTGTTTCGTTGTTGGGTGTCTCGCTGC TGTGCCTCTTGCACCACCGGCCCCTCGTCGTTCGCTCTTGTGCGATCGTC GTGGTTCGAAGGCCCGAAAGGTGCTCCCGCTTGTTCCGCCGATCGCGACC AAGATCGGAGAGCTTATGGGAGACGGGGAGGATGGGATGATAAAAGGCGC TGAGCGCTACCTCGAGGAGTTGCAGGCGTACCGGTCCGAAAACTTTCCGT CTACGGAAGAGCAGGACAGAGAACTGCTCAGGTATTGTGCAAGCTCAAGT CCAAGGACCACTCGTTCGGGAGAGAGAGGGTGGGAGGAGCGAAAGGGTTG ATTGGTTTGTTTTAGACAGGTTAGATGTCGAGGTTCTCTCGGCAGTCAAT CCAAGCACCCATCAAATCGCACATGCTTCGCTGCAACAGAAACCTCGCTT AACGAAGTGGTGCTCGAGTGTTCCTTTCCTTAGTTCCCAACGTGCCGCCC TCCGTCCCTCCCTCGCGGGCGTTTCTGATACCGTGTGGAACAACGCATCG AATCGTACGGCTTCTCAAACGAGTAGCTATTGCTTGGGCAACGGCAGAGG GAAAGTGGACCCGCGGTTGGCGGACGTTGTGCGGTACCGCCTCGGCAGAA AAGAGGCGCACTCGACGGCCGCGGGAATCCTCGAGGAGTTCACGGCGCCG TCACCACCGGCACTATCGACACCGCCAGCTGGTGATGCAACAGACCCTCC GCAGGAGGCTCAGGAGGAGGAGTAGATGGCGGCGTGTAGGATGGAGGAAA CTGCGCACACGGTGTCTATAGGGTATAGCCAACGCCAAAGAGAGTTGAGG CAATGGAGAACCCATGCGGTTGCCAGAGGCCGGTGGCGACGACGTCACGG GGGGGGGGCACCGGCAGAGAGAGGGCGCAGTGGAGGAACTCCGCCGACAG GCGGGCGGTTGATCGAGACAGCCTCATTCCGCCATCGCGGGCGTCTGAGA ACGATAAGATGTTCTCCCAAGATGCATTAGAACGGGGGAGTCTGTCGTTT TGGGGAATTTTGTGCCACCAATGGGCCCAGAATCGCGTCTGTCAATGGAA GAAAGGCACAAGGGATTGCTTGTTATCGGTGAGGGGTACACTGTTGCGTG GTAGCAATATCGCCGCTGATCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig148:31340..35461-

>mRNA_Ecto-sp13_S_contig148.3662.1 ID=mRNA_Ecto-sp13_S_contig148.3662.1|Name=mRNA_Ecto-sp13_S_contig148.3662.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1326bp|location=Sequence derived from alignment at Ecto-sp13_S_contig148:31340..35461- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCTGGGACGTACGGCTGGCGCTAGCCCTGCTTGAGGCGACGTCAGA
CCCTCAGGTCGGCGGAAAGTTCTGGCATGTCTACGGCCGCTTGCTGCCTC
AGCCACACACGGTGACGGTACCCTTCTGCCTGCCGGAGCGCCTCTTGGGC
CAGCTACACAACAGCGGGATGGCCGAGCGGGCTCGGAAGCAGGTCGAGCG
GGTGCGCTGTCTGTACCCGGACCTGATGCAGACGCTGCTCTCTCACCCCA
AGACAGCCGTGTACGCGGCTAGGAGGACTGCCGAAGGCGAGGCGACGGTA
GCAGCAGGAGAAGCAGCAACAGCAGCGGCCACAAAAGAAGCGGCAGAAAA
GGAGACGGATGCGGTGCCGATGGCTCTGCTTTGGGCGTTCGCGATGGTGC
GGAGCAGGGCGTTCGCGGCCGACGGCGATCGATTCGCGTTCGTGCCCTTT
CTGGACATGGCCAACCACGGCTTCGCTGATCCGGCCGCGAACTTCACGTA
CATTAGTGGAGGAAAATCACAACCGGGCGTGTTCCAGCTCCAAGCGATGC
GCAGTATCAGCGCCGGGGAAGAGGTTACCATTTCGTACGGAGAACAGCTG
AATGCCGAGCAGCTGATGGTGCAGTACGGCTTCCCCGCGCCCCCGAACGT
GCCGCTCGAGCGTCCGCTGTGTGGCTCGGACGCTCTCGTCCGAGACACCG
TAGCGGTGGCCATGAAGGAGGGAAAAGAGACGGCGGGAGCGGCGACCGCG
ACGGCAGCTGCGGGTGAAGGCGTTGTCGGAGGCGGGGATGCGGCGGGTCT
CCCTACGGCGGCGGCCCAAGAAGAGGGGGAAGAACGAGGGTCGCGGGGTG
CGTTGTCTGAGGCGGAAAGGGTAGGGCTGATGAACGAGCTGTTCCTACGC
GCGCAGCAGCGGTTCGCGAGGGAGGCCGGTGGTGACGAGCTACGGTTTGA
GATAGGGGCCCGAAAGGTGCTCCCGCTTGTTCCGCCGATCGCGACCAAGA
TCGGAGAGCTTATGGGAGACGGGGAGGATGGGATGATAAAAGGCGCTGAG
CGCTACCTCGAGGAGTTGCAGGCGTACCGGTCCGAAAACTTTCCGTCTAC
GGAAGAGCAGGACAGAGAACTGCTCAGCTATTGCTTGGGCAACGGCAGAG
GGAAAGTGGACCCGCGGTTGGCGGACGTTGTGCGGTACCGCCTCGGCAGA
AAAGAGGCGCACTCGACGGCCGCGGGAATCCTCGAGGAGTTCACGGCGCC
GTCACCACCGGCACTATCGACACCGCCAGCTGGTGATGCAACAGACCCTC
CGCAGGAGGCTCAGGAGGAGGAGTAG
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