mRNA_Ecto-sp13_S_contig148.3659.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig148.3659.1
Unique NamemRNA_Ecto-sp13_S_contig148.3659.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig148.3659.1 vs. uniprot
Match: D7FNM2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM2_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 6.380e-17
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 2 
Query:  248 MMLGNMSSSVISQLDRLKESFLWAAAKGGRVEECESLLEMGT 373
            MMLGNMSSSV+SQLDRLKESFLWAAAKGGRVEECESLLEMGT
Sbjct:    1 MMLGNMSSSVLSQLDRLKESFLWAAAKGGRVEECESLLEMGT 42
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BLAST of mRNA_Ecto-sp13_S_contig148.3659.1 vs. uniprot
Match: A0A7S1U254_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U254_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.490e-8
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 2 
Query:  281 SQLDRLKESFLWAAAKGGRVEECESLLEMGT 373
            S L+RLKESFLWAAA+GGR EECESLLEMG 
Sbjct:    9 SHLERLKESFLWAAARGGREEECESLLEMGA 39
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BLAST of mRNA_Ecto-sp13_S_contig148.3659.1 vs. uniprot
Match: A0A836CF95_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF95_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.490e-7
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 2 
Query:  275 VISQLDRLKESFLWAAAKGGRVEECESLLEMGT 373
            V+SQL RLKESFL AAAKGGRV+EC SLLE+G 
Sbjct:    9 VLSQLHRLKESFLLAAAKGGRVDECRSLLELGA 41
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BLAST of mRNA_Ecto-sp13_S_contig148.3659.1 vs. uniprot
Match: A0A8J2SNL1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SNL1_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.340e-5
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 2 
Query:  284 QLDRLKESFLWAAAKGGRVEECESLLEMGT 373
            QLDR+KESFLWAAAKGGR EE ESLL +G 
Sbjct:    6 QLDRMKESFLWAAAKGGREEEVESLLSIGA 35
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig148.3659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FNM2_ECTSI6.380e-1797.62Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A7S1U254_9STRA4.490e-883.87Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A836CF95_9STRA3.490e-778.79Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A8J2SNL1_9STRA1.340e-580.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig148contigEcto-sp13_S_contig148:15716..16893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score84.0
Seed ortholog evalue2.9e-14
Seed eggNOG ortholog2880.D7FNM2
Model size382
KEGG koko:K15502
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.EP4 subtype prostaglandin E2 receptor binding
EggNOG OGsCOG0666@1,KOG0508@2759
Cds size195
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462789.3607738-CDS-Ecto-sp13_S_contig148:15715..158031681462789.3607738-CDS-Ecto-sp13_S_contig148:15715..15803Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig148 15716..15803 -
1681462789.372307-CDS-Ecto-sp13_S_contig148:16599..167061681462789.372307-CDS-Ecto-sp13_S_contig148:16599..16706Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig148 16600..16706 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462789.3908274-UTR-Ecto-sp13_S_contig148:16706..168931681462789.3908274-UTR-Ecto-sp13_S_contig148:16706..16893Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig148 16707..16893 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig148.3659.1prot_Ecto-sp13_S_contig148.3659.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig148 15716..16706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig148.3659.1

>prot_Ecto-sp13_S_contig148.3659.1 ID=prot_Ecto-sp13_S_contig148.3659.1|Name=mRNA_Ecto-sp13_S_contig148.3659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
MIARSTASPSLIDITKLSSAMMLGNMSSSVISQLDRLKESFLWAAAKGGR
VEECESLLEMGTGK*
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mRNA from alignment at Ecto-sp13_S_contig148:15716..16893-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig148.3659.1 ID=mRNA_Ecto-sp13_S_contig148.3659.1|Name=mRNA_Ecto-sp13_S_contig148.3659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1178bp|location=Sequence derived from alignment at Ecto-sp13_S_contig148:15716..16893- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCAGCAGAAGGAAGGCGGGCAAACCCTCCAAACATCTACACACTCGA
CGTAGTTCTTGAACAACAGTACGACACGACTGACTGACTCTTTTTTGTTC
TGTTTTTCCTTCTTTTCGTCGAAAACGACGGTTTCAAGCGAACCGACACC
CCGCGGTGGAGATTTCGCAGATCCGCCGCCGATTGATATGATCGCCCGTT
CCACTGCTTCACCCTCCCTCATCGATATCACTAAACTTTCATCCGCCATG
ATGCTGGGAAACATGAGCTCTAGTGTCATTTCGCAGCTGGATCGGTGAGT
AAAGGCACTGGTTGGTTGACAACAAGCACGGGAAGAATCCTCGGCAGAAC
ACACAACAGCAGTCAGCGGCAGGCCACGCATGGCATGCATGTAGAATGCT
GCTTCCATACAGCAGTATTATATGTGACCCATGATCGGCTACACCCGCAC
ATTAGCAGCGTGTGTGTGTTTTCCCATCAAGTCTGGCGCCAGCCCACACA
ACTTTCGGTGTATGTTTGCGTTAGTGGTGTACATCAGCCGGGGTTACCCA
AGAGCAAGATCACAACCGATTTTTTTTTTGTGTAGACCAATCTAGCTTGT
GCTGCTGCAGATAACACGTTTTTGTAGTCTACGGCAGTACGTAGACTAAC
GAACTGCTGAAGACCCCACCTTTCCCCCGGCGTGGACTGCTATAGTCTAG
ACTACCGCTCATCCAAGTGAGCATTCTTTGTCTTGGATATATGCTGACAG
CTCAAGACCTTCCCCTCATCGTGATAAATCCCCCCACACAGGAGTAGTAG
ACTACTGTAGGGACTGCTGTAAAGAGATTAGACGATACATTTTCCAGTCC
CATTGCTGTGTTGATCGATTCCTGTCTCTGTTGCTGGCAAAGTGCCTCTC
GCTCCTTGCTCTGTTGCACGTAGAACACGCCCCATGGGCATGGTGACTTG
TGGTTCTCTCATGCATGGAGCAATTGCAATAATTTCGTCATGTGATGCGT
TGACGTGCGAAGAGTTTACGTAGAAAGAACAAGACATCACCTTCTGTAAC
GACGTCGACGCCGACTGTTCCATGCTCCCCTTCTGACAAGCTTAAAGGAA
AGTTTCCTCTGGGCCGCGGCGAAAGGTGGGCGTGTAGAGGAGTGCGAGTC
TCTTCTGGAGATGGGGACAGGCAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig148:15716..16893-

>mRNA_Ecto-sp13_S_contig148.3659.1 ID=mRNA_Ecto-sp13_S_contig148.3659.1|Name=mRNA_Ecto-sp13_S_contig148.3659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig148:15716..16893- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGCCCGTTCCACTGCTTCACCCTCCCTCATCGATATCACTAAACT
TTCATCCGCCATGATGCTGGGAAACATGAGCTCTAGTGTCATTTCGCAGC
TGGATCGCTTAAAGGAAAGTTTCCTCTGGGCCGCGGCGAAAGGTGGGCGT
GTAGAGGAGTGCGAGTCTCTTCTGGAGATGGGGACAGGCAAGTGA
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