mRNA_Ecto-sp13_S_contig148.3658.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig148.3658.1
Unique NamemRNA_Ecto-sp13_S_contig148.3658.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig148.3658.1 vs. uniprot
Match: D7FNM2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM2_ECTSI)

HSP 1 Score: 306 bits (785), Expect = 3.560e-100
Identity = 217/269 (80.67%), Postives = 221/269 (82.16%), Query Frame = 3 
Query:    3 INWVSPEGDTPLLAACRNGHLQTALCLLSHGASANQVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQDGMLQRLDTIAQRSGRRTHHHPGISTAATNTSTFASSSGRGAQDGSGSVSSRRSNTVLDSDTLSARTTGGGVPENNSGDGRPGWRWRSNTGRIEYHVPLTDDAHDGAAGVGPAAISTGDGGR*DDVQREERGGGEGRTTFPSISRKAGSTSADSRPLPRVHRAGRASSSSDDGVRSSDDEHDE 809
            INWVSPEGDTPLL                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       V DGMLQRLDTIAQRSGRRTHHH GISTAA NTSTF +SSGR AQDG GS+SSRRSNTVLDSDTLSAR TGGGVPENN GDGR GWRWRSNTGRIE+HVPLTDDAHDGAAGVGPAAISTGDGGR DD QREERGG EGRTTFPSISRKAGSTSADSRP  RVH AGRA+SSS DGVRSSDDEHDE
Sbjct:   44 INWVSPEGDTPLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFESQGPHVPDGMLQRLDTIAQRSGRRTHHHLGISTAAINTSTFTTSSGRSAQDGGGSMSSRRSNTVLDSDTLSARATGGGVPENNIGDGRSGWRWRSNTGRIEHHVPLTDDAHDGAAGVGPAAISTGDGGR-DDAQREERGGVEGRTTFPSISRKAGSTSADSRPSSRVHSAGRAASSSGDGVRSSDDEHDE 311
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig148.3658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNM2_ECTSI3.560e-10080.67Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig148contigEcto-sp13_S_contig148:13245..15307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1001
Hectar predicted targeting categoryother localisation
Exons4
Cds size591
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig148.3658.1prot_Ecto-sp13_S_contig148.3658.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig148 13265..14613 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462789.1239357-UTR-Ecto-sp13_S_contig148:13244..132641681462789.1239357-UTR-Ecto-sp13_S_contig148:13244..13264Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig148 13245..13264 -
1681462789.1772494-UTR-Ecto-sp13_S_contig148:14613..147811681462789.1772494-UTR-Ecto-sp13_S_contig148:14613..14781Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig148 14614..14781 -
1681462789.1873572-UTR-Ecto-sp13_S_contig148:15085..153071681462789.1873572-UTR-Ecto-sp13_S_contig148:15085..15307Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig148 15086..15307 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462789.136203-CDS-Ecto-sp13_S_contig148:13264..134391681462789.136203-CDS-Ecto-sp13_S_contig148:13264..13439Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig148 13265..13439 -
1681462789.1456814-CDS-Ecto-sp13_S_contig148:13887..140651681462789.1456814-CDS-Ecto-sp13_S_contig148:13887..14065Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig148 13888..14065 -
1681462789.1568205-CDS-Ecto-sp13_S_contig148:14375..146131681462789.1568205-CDS-Ecto-sp13_S_contig148:14375..14613Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig148 14376..14613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig148.3658.1

>prot_Ecto-sp13_S_contig148.3658.1 ID=prot_Ecto-sp13_S_contig148.3658.1|Name=mRNA_Ecto-sp13_S_contig148.3658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=197bp
MAVDQCQAGAATPYLIVTRSALAPPVGGCQKTIAATAGRDGAGGVTPVGL
STTFPLRTTPMMVLLVLARQRFRRETVAGKMMSRGRREGEGREGRRFHPF
HAKPGPPVPTADHCRGSTGPVGHRPPATTESVPVTTNTMKYSTKTKQDVD
FSVAPTAGPVSGNAEAYLSEIVEQGTATRCLRACSSYQQANPFHTR*
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mRNA from alignment at Ecto-sp13_S_contig148:13245..15307-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig148.3658.1 ID=mRNA_Ecto-sp13_S_contig148.3658.1|Name=mRNA_Ecto-sp13_S_contig148.3658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2063bp|location=Sequence derived from alignment at Ecto-sp13_S_contig148:13245..15307- (Ectocarpus species13 EcNAP12_S_4_19m)
ACATAAACTGGGTGAGTCCGGAAGGAGACACTCCGCTCCTAGCAGCCTGT
CGCAACGGGCACCTTCAAACCGCCCTGTGTCTGCTCAGTCACGGCGCGTC
GGCAAACCAGGTGGACAAGGAAGGGCGGACTGCCCTCCACGTCTCTTGCC
GCCATGGCAAGGAAGCGGTTGCCGAGGCATTGATCCTGAGGGGAGCTGAT
GTATCCGCCAGGGACCACGGCGGTAAGCAACTCTCGTGGTCACGACTGGA
GCACGACCCTTGCTGTATCACATCGTTCTGTACCTAACAGCCAACTCCTT
GAGAAAGCGATGAGCGTACCGAAAGGGGAATAAATACAAGTGGGGCCGAG
TTGCATGATCTATTGCAGTAATTATGTTCGTATCAGTGTTGATGGCATAG
GCATCGCAGGAGGATGAGAGAGCTGAATGGGTTAGGCTTGTGGTAGTCGT
GACCTACCCGTCGTCGATGCTCGAAAACCAAACCGCGAACCATTTCAACT
GCATTGTACGTACTCTATCGAACTAGGTGCGACGGCATTCGAGAGTCAAG
GGCAGCACGTCCAGGATGGTATGCTTCAACGCCTCGACACCATCGCCCAG
CGCAGCGGTAGGCGAACCCACCACCACCCCGGCATAAGCACTGCAGCTAC
CAACACCAGCACATTCGCCTCCTCTTCTGGCAGGGGTGCTCAAGATGGCA
GTGGATCAGTGTCAAGCAGGCGCAGCAACACCGTACTTGATAGTGACACG
CTCAGCGCTCGCACCACCGGTGGGGGGGTGCCAGAAAACAATAGCGGCGA
CGGCAGGCCGGGATGGCGCTGGCGGAGTAACACCGGTAGGATTGAGTACC
ACGTTCCCCTTACGGACGACGCCCATGATGGTGCTGCTGGTGTTGGCCCG
GCAGCGATTTCGACGGGAGACGGTGGCAGGTAGTATATCGGCGCTACGAC
AGTTAATCGTTCGCAATTTATGCTACCCTACGGTATTAGCGAGAACGGTG
GTTCACAAGATTTTTACGGGGGAGATAGGGCGAGACACTAAGATGTACCT
GGTTTTGCTTTAGAGGGAACTGGGTCAGCTTTAAGTTACGGAAAGCGCAC
AAACGTGGTAAGAGTGGGCCTGTCCGTTTCCTATGGTCCACAGAATACGA
CCGAATGCCATCCGCGTGTCTCTACGTGGCATATCGTGAGATCGACGTCT
TGATACCGTGACGTTTCGGCTGATCTGTACCCATGCCTTCAGAGATGATG
TCCAGAGGGAGGAGAGAGGGGGAGGGGAGGGAAGGACGACGTTTCCATCC
ATTTCACGCAAAGCCGGGTCCACCAGTGCCGACAGCAGACCATTGCCGAG
GGTCCACAGGGCCGGTCGGGCATCGTCCTCCAGCGACGACGGAGTCCGTT
CCAGTGACGACGAACACGATGTGAGTGGAAGCCAGTGACAGCACAAGAGA
CGACCTTGTACATCAGTAGCACTAGAAACAGCGAAGAGTAGAGACTCGCG
ACGCAAAACTGTATGGCGTGAACGCGAAGCGAAGCACTACGGCAATGGGA
GTTCACGGTATTTGGCTGAGTGGCTGAAGCGGCGGGAGGGGGGGCGAGGC
AGGAGGACCACTGTCGGGACGGGAATCCCTTGCCAGACAAGGTGCATATT
TAACGACAGAGCCGTGACTCTTGCTTCTAAATGTTTAGAAAGCTGGTGCA
TACTCGGTAAGACATGGACAAAGTTGGTGCGTTCCTCCTATTGGTTTCGT
TTCGTGAGGGCTGGGAAAAGAAGGGAGGGAACAGGCTACACCGGTTGCCC
ACCACACGGACCTCTTCTCCCATAATAATAAAGGAGCCGGGATTTTTACG
GTTTTTTGTTTCGCACAGGAAGTACTCCACGAAGACGAAACAAGACGTCG
ATTTCTCAGTAGCGCCTACCGCGGGCCCGGTATCAGGCAACGCGGAAGCT
TACCTATCAGAAATCGTAGAACAGGGAACGGCGACGAGATGTCTGAGAGC
ATGCAGCTCATATCAGCAGGCGAACCCGTTCCACACGCGGTAAGAACCCG
ACAGTACCATATA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig148:13245..15307-

>mRNA_Ecto-sp13_S_contig148.3658.1 ID=mRNA_Ecto-sp13_S_contig148.3658.1|Name=mRNA_Ecto-sp13_S_contig148.3658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig148:13245..15307- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGTGGATCAGTGTCAAGCAGGCGCAGCAACACCGTACTTGATAGT
GACACGCTCAGCGCTCGCACCACCGGTGGGGGGGTGCCAGAAAACAATAG
CGGCGACGGCAGGCCGGGATGGCGCTGGCGGAGTAACACCGGTAGGATTG
AGTACCACGTTCCCCTTACGGACGACGCCCATGATGGTGCTGCTGGTGTT
GGCCCGGCAGCGATTTCGACGGGAGACGGTGGCAGGTAAGATGATGTCCA
GAGGGAGGAGAGAGGGGGAGGGGAGGGAAGGACGACGTTTCCATCCATTT
CACGCAAAGCCGGGTCCACCAGTGCCGACAGCAGACCATTGCCGAGGGTC
CACAGGGCCGGTCGGGCATCGTCCTCCAGCGACGACGGAGTCCGTTCCAG
TGACGACGAACACGATGAAGTACTCCACGAAGACGAAACAAGACGTCGAT
TTCTCAGTAGCGCCTACCGCGGGCCCGGTATCAGGCAACGCGGAAGCTTA
CCTATCAGAAATCGTAGAACAGGGAACGGCGACGAGATGTCTGAGAGCAT
GCAGCTCATATCAGCAGGCGAACCCGTTCCACACGCGGTAA
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