mRNA_Ecto-sp13_S_contig14799.3656.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14799.3656.1
Unique NamemRNA_Ecto-sp13_S_contig14799.3656.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14799.3656.1 vs. uniprot
Match: A0A6H5KY73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY73_9PHAE)

HSP 1 Score: 813 bits (2101), Expect = 7.070e-291
Identity = 476/537 (88.64%), Postives = 491/537 (91.43%), Query Frame = 1 
Query:    1 MRAPTAAATPLVVLPLIMLPMTHGAALSRMFATRQASLDQNGPARMIRGVPSAAGLEAGKREGGKISRRNTESFGPLALLDVCYMEDDCTPGLYVEAGFRTQCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCDVTHTRCDDAIVPAHPTDEEHSHEDXXXXXXXXXXXXXXXXXXXXXXXXTSRDNSGDIMADQQDAEGGQLYDDGKFSHGEYXXXXXXXXXXDDRTAGSGLDRYWDGYSGRYSIGQDDYTTSSEATPRAQDNPLAEDSGTRPSENPAGSPENNQNDEKGTEFPPQHDETSGVSPKDDGVHEGGEGEEPTAGPLSTSSTEESSTTICQPDYASGTIETMASSEARVEAVAMDSQGNVFYSVSKGQGAGDAFILWAASSSPSSXXXXXXXXXXXXXXTVVYVGTGIILAMAIDADDNLIFTMEDAPAVSGGVFLLSWRQINPGGGVGTEDSSGTGVSRYDSYFGMPSEKAETAETSAVSLAAGLGPFLPGVAVCPVTGDVYVTRGHTGIARLVKGTDGSFSQKVRF 1611
            MRA TAAATPLVVLPL MLPMTHG ALSRMFATRQASLDQ+GPARMIRGVPSAAGLEAGKR+G KISRRNTESFGPLALLDVCYM DDCTPGLYVEAGFRTQCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCDV+HTRCDDAIVPAHPTDEEHSHEDXXXXXXXXXXXXXX          T RD+SGDI+ DQ+DAEGGQLYDDG+ S+GE XXXXXXXXXX     G GLDRYW GY GRYS GQ DYTTSSEATPR QDNP AEDSGTRPSE+PAGSP++NQ+DEKGTEFPP+HDETSG SPKDDGVHEGGEGEE TA PLSTSSTEESSTTICQPDYASGTIETMASSE RVEAVAMDSQGNVFYSVSKGQG GDA ILWAASSSP  XXXXXXXXXXXXXXTVVYVGTGIILAMAIDADDNLIFTMEDAPAVSGGVFLLSWRQINPGGGVG EDSS TGVSRYDSYF MPSE   TAETSAVSLAAGLGPFLPGVAVCPVTGDVYVTRGHTGIARLVKGTDGSFSQK+ +
Sbjct:    1 MRALTAAATPLVVLPL-MLPMTHGVALSRMFATRQASLDQSGPARMIRGVPSAAGLEAGKRDGRKISRRNTESFGPLALLDVCYMTDDCTPGLYVEAGFRTQCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCDVSHTRCDDAIVPAHPTDEEHSHEDXXXXXXXXXXXXXXSSD-------TPRDSSGDILTDQRDAEGGQLYDDGESSYGEXXXXXXXXXXXXXSITGPGLDRYWGGYFGRYSFGQYDYTTSSEATPRTQDNPSAEDSGTRPSEDPAGSPDSNQDDEKGTEFPPRHDETSGASPKDDGVHEGGEGEESTAAPLSTSSTEESSTTICQPDYASGTIETMASSETRVEAVAMDSQGNVFYSVSKGQGPGDA-ILWAASSSPXXXXXXXXXXXXXXXXTVVYVGTGIILAMAIDADDNLIFTMEDAPAVSGGVFLLSWRQINPGGGVGAEDSSDTGVSRYDSYFEMPSETG-TAETSAVSLAAGLGPFLPGVAVCPVTGDVYVTRGHTGIARLVKGTDGSFSQKMEW 527
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BLAST of mRNA_Ecto-sp13_S_contig14799.3656.1 vs. uniprot
Match: D7FIV4_ECTSI (NHL repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV4_ECTSI)

HSP 1 Score: 654 bits (1686), Expect = 8.390e-229
Identity = 391/544 (71.88%), Postives = 405/544 (74.45%), Query Frame = 1 
Query:    1 MRAPTAAATPLVVLPLIMLPMTHGAALSRMFATRQASLDQNGPARMIRGVPSAAGLEAGKREGGKISRRNTESFGPLALLDVCYMEDDCTPGLYVEAGFRTQCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCDVTHTRCDDAIVPAHPTDEEHSHEDXXXXXXXXXXXXXXXXXXXXXXXX-------TSRDNSGDIMADQQDAEGGQLYDDGKFSHGEYXXXXXXXXXXDDRTAGSGLDRYWDGYSGRYSIGQDDYTTSSEATPRAQDNPLAEDSGTRPSENPAGSPENNQNDEKGTEFPPQHDETSGVSPKDDGVHEGGEGEEPTAGPLSTSSTEESSTTICQPDYASGTIETMASSEARVEAVAMDSQGNVFYSVSKGQGAGDAFILWAASSSPSSXXXXXXXXXXXXXXTVVYVGTGIILAMAIDADDNLIFTMEDAPAVSGGVFLLSWRQINPGGGVGTEDSSGTGVSRYDSYFGMPSEKAETAETSAVSLAAGLGPFLPGVAVCPVTGDVYVTRGHTGIARLVKGTDGSFSQKVRF 1611
            MRAPTAAATPLVVLPL MLPMTHG ALSRMFATRQASLDQ+GPA MIRGVP AA LEAGKREGGKISRRNTESFGPLALLDVCYM DDCTPGLYVEAGFRTQCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCD +H RCDDA+VPAHPTDEEHSHED  XXXXXXXXXXXXXXXXXXXXXX       T +D+SGDIMADQQD EGGQLYDDG+ S+GEY          DDR  GSGLDRYWDGYSGRYS GQ DYTTSSE TPRAQDNPLAEDSGTR  E+  GSP+NN +DEKGTEFPP HDETSG SPK DG HEGGEGEE T GPLSTSSTEESSTTICQPDYA+GTIETMASSE RVEAVAMDSQ                                                                                    INPGGGVG EDSSGTGVS YDS+F M SE  ETAETSAVSLAAGLGPFLPGVAVCPVTGDVYVTRGHTGIARLVKGTDGSF QK+ +
Sbjct:    1 MRAPTAAATPLVVLPL-MLPMTHGVALSRMFATRQASLDQSGPAGMIRGVPRAARLEAGKREGGKISRRNTESFGPLALLDVCYMTDDCTPGLYVEAGFRTQCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCDASHARCDDAVVPAHPTDEEHSHEDDFXXXXXXXXXXXXXXXXXXXXXXXXXXTSDTPKDSSGDIMADQQDGEGGQLYDDGETSYGEYDDVQYRHDKYDDRITGSGLDRYWDGYSGRYSFGQYDYTTSSEDTPRAQDNPLAEDSGTRLYEDRVGSPDNNHDDEKGTEFPPPHDETSGASPKADGAHEGGEGEESTTGPLSTSSTEESSTTICQPDYAAGTIETMASSETRVEAVAMDSQ------------------------------------------------------------------------------------INPGGGVGAEDSSGTGVSMYDSFFEMTSE-TETAETSAVSLAAGLGPFLPGVAVCPVTGDVYVTRGHTGIARLVKGTDGSFGQKMEW 458
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14799.3656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KY73_9PHAE7.070e-29188.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIV4_ECTSI8.390e-22971.88NHL repeat-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14799contigEcto-sp13_S_contig14799:395..3096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1611
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionNHL repeat-containing protein
Ec32 orthologEc-07_007620.1
Cds size1611
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462789.0536802-CDS-Ecto-sp13_S_contig14799:394..9071681462789.0536802-CDS-Ecto-sp13_S_contig14799:394..907Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14799 395..907 -
1681462789.071307-CDS-Ecto-sp13_S_contig14799:1188..19051681462789.071307-CDS-Ecto-sp13_S_contig14799:1188..1905Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14799 1189..1905 -
1681462789.081547-CDS-Ecto-sp13_S_contig14799:2160..22561681462789.081547-CDS-Ecto-sp13_S_contig14799:2160..2256Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14799 2161..2256 -
1681462789.0917165-CDS-Ecto-sp13_S_contig14799:2811..30961681462789.0917165-CDS-Ecto-sp13_S_contig14799:2811..3096Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14799 2812..3096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14799.3656.1prot_Ecto-sp13_S_contig14799.3656.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14799 395..3096 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14799.3656.1

>prot_Ecto-sp13_S_contig14799.3656.1 ID=prot_Ecto-sp13_S_contig14799.3656.1|Name=mRNA_Ecto-sp13_S_contig14799.3656.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=537bp
MRAPTAAATPLVVLPLIMLPMTHGAALSRMFATRQASLDQNGPARMIRGV
PSAAGLEAGKREGGKISRRNTESFGPLALLDVCYMEDDCTPGLYVEAGFR
TQCEKTPFSGGDTVCCKPFATPCDSDKACCSGNCDVTHTRCDDAIVPAHP
TDEEHSHEDEFYSDEIAYYSDEIAYYSDEISSYTSRDNSGDIMADQQDAE
GGQLYDDGKFSHGEYGDGQYRHGKYDDRTAGSGLDRYWDGYSGRYSIGQD
DYTTSSEATPRAQDNPLAEDSGTRPSENPAGSPENNQNDEKGTEFPPQHD
ETSGVSPKDDGVHEGGEGEEPTAGPLSTSSTEESSTTICQPDYASGTIET
MASSEARVEAVAMDSQGNVFYSVSKGQGAGDAFILWAASSSPSSANNNVD
TDNSNDGDTVVYVGTGIILAMAIDADDNLIFTMEDAPAVSGGVFLLSWRQ
INPGGGVGTEDSSGTGVSRYDSYFGMPSEKAETAETSAVSLAAGLGPFLP
GVAVCPVTGDVYVTRGHTGIARLVKGTDGSFSQKVRF
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mRNA from alignment at Ecto-sp13_S_contig14799:395..3096-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14799.3656.1 ID=mRNA_Ecto-sp13_S_contig14799.3656.1|Name=mRNA_Ecto-sp13_S_contig14799.3656.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2702bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14799:395..3096- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGGCACCGACAGCAGCGGCCACGCCGCTGGTGGTGCTGCCGCTCAT
CATGCTGCCCATGACGCACGGTGCGGCTCTCTCGCGTATGTTCGCCACAA
GACAAGCCAGCCTCGACCAAAACGGACCCGCCCGCATGATTCGCGGGGTA
CCGAGCGCTGCAGGGCTCGAAGCTGGCAAGAGAGAGGGCGGAAAGATATC
AAGGCGCAACACAGAGAGTTTCGGTCCGCTCGCCCTCTTGGACGTGTGCT
ACATGGAAGATGATTGCACCCCTGGGTTGTATGTGGTGAGCTGATTAACT
TGCTTATTGCCCGACGTAGTAGTGAACCACACGGTGCAAGAGATCAGTAA
TATTTCTTCTGCTACTACTGTGGATGCAAGGTCGAGATTGTCAAGCCATC
TTCAAGTACGTAGCGCCACTCTTGGTATGTAGTTACAATATGTTGTGTCG
AGAATGGCAGTGGCCTGGTAGGCTGGGATTCTCAACGCATCGTTACTAAC
GTGTGACATGCACCAGTCGATCTACCGCTTCCAGCCTCCATGTTGTCCTT
TGATATTGGCGCGCTCAGCTGCATCTGTGTATGCTTTGTGCCAGCAACTG
TTCCTGTAGATGGCGGGCTGCCCTTCACCACGGCTCCCAGGATGCTTCGT
CGCGCTTGCGATGCCATCCAGATCTCCTTGTCAGATTCTGCAGTGCGTAT
TTCTTCCCAAACAGTTTTGATCACTAGCATTGATGACAACTGGTCCTTAA
TTGTGAAATCGCGTTGTATTTTCTAACACACATTACGCTGTCATTTTGGT
CGTGACCACTCCAACACACGATCGACCCCGTGGATTTCAGGAAGCTGGAT
TTCGGACCCAATGCGAGAAAACGCCGTTTTCTGGCGGAGACACGGTTTGC
TGCAAACCCTTTGCGACACCATGTGACTCGGACAAGGTAGGCTACATTTC
GTGCCCGAACGAGGCACTGAAGCGCTGCCGAAACACGTTTTGTTAGACCC
ACCAGCGGCCCAAAGCCAAACGCGATGGTTCGAGTCATCATCTGAAAGAA
TGGCGAAAACCGCTGCCGGAGCCGCTTCAATACGTCGAAGACAAGCAGGC
GCAATCGATTGGTATTCCCCCTCCTGTGTTCGTGCGACATCGGTCTCGTA
TTCATTGATTCAACGCATCATGCTATTTTCCCTTGCGTCAGGCTTGCTGC
TCCGGCAACTGCGACGTTACCCATACCCGGTGCGACGACGCGATCGTTCC
GGCTCACCCGACGGACGAAGAGCACTCCCACGAGGATGAATTCTACTCGG
ATGAGATTGCCTACTACTCGGATGAGATTGCCTACTACTCTGATGAGATT
TCATCCTACACATCGAGGGACAACTCTGGCGACATCATGGCCGATCAGCA
GGACGCTGAGGGTGGTCAACTGTACGACGATGGGAAATTTAGTCATGGCG
AGTACGGCGATGGCCAATATCGACATGGCAAGTACGATGACAGGACAGCT
GGTTCCGGCCTTGATCGGTATTGGGACGGATATTCTGGCCGATACAGCAT
TGGCCAGGACGATTACACGACCAGCTCGGAAGCCACTCCACGCGCGCAAG
ACAATCCGTTGGCGGAAGATTCGGGCACGCGTCCCTCTGAAAACCCTGCT
GGGTCTCCAGAAAACAATCAGAACGACGAAAAGGGCACCGAATTTCCACC
CCAACATGATGAAACAAGTGGAGTTTCTCCGAAAGATGACGGTGTTCATG
AAGGCGGGGAGGGCGAAGAGCCTACGGCTGGCCCTCTCTCGACATCTTCG
ACCGAGGAGAGTTCTACCACCATCTGTCAACCGGACTACGCCTCAGGGAC
AATCGAAACGATGGCATCGTCGGAAGCAAGAGTCGAGGCGGTTGCAATGG
ACTCACAGGTAACGTCAAAATGTCAAATCATGTGCTAAATAGGGAATACC
GAAGAGGTGGAAACATGCCCCCGATTACACCTATTGCGTCACGATTGTCC
ACCGGCACAATCAGGCGGGAGCCGCACGTTGTTTGCAATGCTTGACCCGG
TAAGGAAGATCAACGCAAAACGTTCTTGTCTGCAGATATTGTTACACGGT
TCAGGTGACCTCGATCGGCGGCACCCGTGACATCGAGCATCATACCCAAC
TACTGCAGTTCTCGTCCTGTCCCTTGGTAACGACGACAGGGAAATGTGTT
TTACTCCGTCAGCAAAGGCCAGGGTGCTGGCGATGCTTTTATTCTGTGGG
CGGCGTCCTCTTCTCCCTCTAGTGCTAACAACAATGTAGACACTGACAAC
AGTAACGATGGTGATACCGTCGTCTACGTCGGCACCGGCATAATCCTTGC
AATGGCCATCGATGCCGACGACAACCTCATCTTCACCATGGAAGACGCGC
CCGCCGTAAGCGGGGGAGTATTCTTGCTCTCGTGGCGGCAGATCAACCCG
GGCGGCGGCGTTGGGACCGAGGATTCCAGCGGTACCGGTGTGTCTAGGTA
CGATTCCTACTTCGGAATGCCTTCGGAGAAGGCTGAGACCGCAGAGACTT
CGGCAGTGAGCCTAGCCGCCGGTCTCGGTCCATTTTTGCCTGGCGTCGCC
GTATGCCCCGTCACGGGAGACGTGTACGTCACAAGGGGTCACACTGGGAT
AGCGAGGCTGGTCAAGGGAACCGACGGGAGTTTCAGCCAAAAGGTCAGGT
TT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14799:395..3096-

>mRNA_Ecto-sp13_S_contig14799.3656.1 ID=mRNA_Ecto-sp13_S_contig14799.3656.1|Name=mRNA_Ecto-sp13_S_contig14799.3656.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1611bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14799:395..3096- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGGCACCGACAGCAGCGGCCACGCCGCTGGTGGTGCTGCCGCTCAT
CATGCTGCCCATGACGCACGGTGCGGCTCTCTCGCGTATGTTCGCCACAA
GACAAGCCAGCCTCGACCAAAACGGACCCGCCCGCATGATTCGCGGGGTA
CCGAGCGCTGCAGGGCTCGAAGCTGGCAAGAGAGAGGGCGGAAAGATATC
AAGGCGCAACACAGAGAGTTTCGGTCCGCTCGCCCTCTTGGACGTGTGCT
ACATGGAAGATGATTGCACCCCTGGGTTGTATGTGGAAGCTGGATTTCGG
ACCCAATGCGAGAAAACGCCGTTTTCTGGCGGAGACACGGTTTGCTGCAA
ACCCTTTGCGACACCATGTGACTCGGACAAGGCTTGCTGCTCCGGCAACT
GCGACGTTACCCATACCCGGTGCGACGACGCGATCGTTCCGGCTCACCCG
ACGGACGAAGAGCACTCCCACGAGGATGAATTCTACTCGGATGAGATTGC
CTACTACTCGGATGAGATTGCCTACTACTCTGATGAGATTTCATCCTACA
CATCGAGGGACAACTCTGGCGACATCATGGCCGATCAGCAGGACGCTGAG
GGTGGTCAACTGTACGACGATGGGAAATTTAGTCATGGCGAGTACGGCGA
TGGCCAATATCGACATGGCAAGTACGATGACAGGACAGCTGGTTCCGGCC
TTGATCGGTATTGGGACGGATATTCTGGCCGATACAGCATTGGCCAGGAC
GATTACACGACCAGCTCGGAAGCCACTCCACGCGCGCAAGACAATCCGTT
GGCGGAAGATTCGGGCACGCGTCCCTCTGAAAACCCTGCTGGGTCTCCAG
AAAACAATCAGAACGACGAAAAGGGCACCGAATTTCCACCCCAACATGAT
GAAACAAGTGGAGTTTCTCCGAAAGATGACGGTGTTCATGAAGGCGGGGA
GGGCGAAGAGCCTACGGCTGGCCCTCTCTCGACATCTTCGACCGAGGAGA
GTTCTACCACCATCTGTCAACCGGACTACGCCTCAGGGACAATCGAAACG
ATGGCATCGTCGGAAGCAAGAGTCGAGGCGGTTGCAATGGACTCACAGGG
AAATGTGTTTTACTCCGTCAGCAAAGGCCAGGGTGCTGGCGATGCTTTTA
TTCTGTGGGCGGCGTCCTCTTCTCCCTCTAGTGCTAACAACAATGTAGAC
ACTGACAACAGTAACGATGGTGATACCGTCGTCTACGTCGGCACCGGCAT
AATCCTTGCAATGGCCATCGATGCCGACGACAACCTCATCTTCACCATGG
AAGACGCGCCCGCCGTAAGCGGGGGAGTATTCTTGCTCTCGTGGCGGCAG
ATCAACCCGGGCGGCGGCGTTGGGACCGAGGATTCCAGCGGTACCGGTGT
GTCTAGGTACGATTCCTACTTCGGAATGCCTTCGGAGAAGGCTGAGACCG
CAGAGACTTCGGCAGTGAGCCTAGCCGCCGGTCTCGGTCCATTTTTGCCT
GGCGTCGCCGTATGCCCCGTCACGGGAGACGTGTACGTCACAAGGGGTCA
CACTGGGATAGCGAGGCTGGTCAAGGGAACCGACGGGAGTTTCAGCCAAA
AGGTCAGGTTT
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