mRNA_Ecto-sp13_S_contig14794.3654.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14794.3654.1
Unique NamemRNA_Ecto-sp13_S_contig14794.3654.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14794.3654.1 vs. uniprot
Match: D7G6K3_ECTSI (2-cys peroxiredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K3_ECTSI)

HSP 1 Score: 399 bits (1025), Expect = 7.770e-138
Identity = 194/198 (97.98%), Postives = 194/198 (97.98%), Query Frame = 1 
Query:    1 YPAPSANIMEPAPGFKAKAVVDGDIVDVSTDDYKGKWVVLLFYPKDWTFVCPTEIIAFSDRHSEFEALGAQVLGISTDTEDSHLAWTRHPRKRGGLGHMRIPLVADPTKEISADYGVLIPSLGIALRGLFIINPEGILEQASLSVTINNLGIGRDVDETLRLIQAHQFLAKHGEVCPAGWKPGDKTMKPGLDASMEYF 594
            YPAPSANIMEPAPGFKAKAVVDGDIVDVSTDDYKGKWVVLLFYPKDWTFVCPTEIIAFSDRHSEFEALGAQVLGISTDTEDSHLAWTRHPRKRGGLGHMRIPLVADPTKEISADYGVLIPSLGIALRGLFIINPEGILEQ    VTINNLGIGRDVDETLRLIQAHQFLAKHGEVCPAGWKPGDKTMKPGLDASMEYF
Sbjct:   69 YPAPSANIMEPAPGFKAKAVVDGDIVDVSTDDYKGKWVVLLFYPKDWTFVCPTEIIAFSDRHSEFEALGAQVLGISTDTEDSHLAWTRHPRKRGGLGHMRIPLVADPTKEISADYGVLIPSLGIALRGLFIINPEGILEQ----VTINNLGIGRDVDETLRLIQAHQFLAKHGEVCPAGWKPGDKTMKPGLDASMEYF 262
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BLAST of mRNA_Ecto-sp13_S_contig14794.3654.1 vs. uniprot
Match: A0A6V1NN04_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NN04_HETAK)

HSP 1 Score: 286 bits (732), Expect = 4.130e-95
Identity = 136/198 (68.69%), Postives = 161/198 (81.31%), Query Frame = 1 
Query:    1 YPAPSANIMEPAPGFKAKAVVDGDIVDVSTDDYKGKWVVLLFYPKDWTFVCPTEIIAFSDRHSEFEALGAQVLGISTDTEDSHLAWTRHPRKRGGLGHMRIPLVADPTKEISADYGVLIPSLGIALRGLFIINPEGILEQASLSVTINNLGIGRDVDETLRLIQAHQFLAKHGEVCPAGWKPGDKTMKPGLDASMEYF 594
            Y    A I +PAP FKA AVVDG+I +V   DY+GKW VLLFYPKD+TFVCPTEIIAFSD    F+AL A+VL +STDTE+SHLAW R PRKRGGLGHM+IP+VAD TK ISADYGVL+  +GIALRGLF+INPEG+LEQ    +T+NNL +GR VDETLRL+QA QF+A+HGEVCPAGWKPG++TM    D +M+YF
Sbjct:   60 YSPSEAKIGKPAPTFKAGAVVDGEITEVDLGDYRGKWTVLLFYPKDFTFVCPTEIIAFSDAAPRFKALNAEVLALSTDTEESHLAWIRTPRKRGGLGHMQIPIVADVTKAISADYGVLLEDIGIALRGLFLINPEGVLEQ----ITVNNLPVGRSVDETLRLLQAFQFVAEHGEVCPAGWKPGERTMVAHPDGAMDYF 253
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BLAST of mRNA_Ecto-sp13_S_contig14794.3654.1 vs. uniprot
Match: A0A835YLA5_9STRA (2-cys peroxiredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA5_9STRA)

HSP 1 Score: 288 bits (738), Expect = 2.510e-94
Identity = 137/194 (70.62%), Postives = 160/194 (82.47%), Query Frame = 1 
Query:   13 SANIMEPAPGFKAKAVVDGDIVDVSTDDYKGKWVVLLFYPKDWTFVCPTEIIAFSDRHSEFEALGAQVLGISTDTEDSHLAWTRHPRKRGGLGHMRIPLVADPTKEISADYGVLIPSLGIALRGLFIINPEGILEQASLSVTINNLGIGRDVDETLRLIQAHQFLAKHGEVCPAGWKPGDKTMKPGLDASMEYF 594
            +A I +PAP F+  AV+DG+I  +S + YKGKW VLLFYPKD+TFVCPTEIIAFSDRH EFE L AQVL ISTDTE+ HLAWT+ PRK+GGLGHM+IPLVAD TK I+ADYGVLI  LGIALRGLFIINP+G+LEQ    +TIN L +GR VDETLRL+ A+QF+A+HGEVCPAGW PG KTMK   + S+EYF
Sbjct:   72 AAVIGKPAPTFETAAVIDGEIEKISLEQYKGKWTVLLFYPKDFTFVCPTEIIAFSDRHDEFEKLNAQVLAISTDTEECHLAWTKVPRKKGGLGHMKIPLVADTTKSIAADYGVLIQDLGIALRGLFIINPDGVLEQ----ITINGLPVGRSVDETLRLLAAYQFVAEHGEVCPAGWTPGGKTMKADAEGSLEYF 261
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BLAST of mRNA_Ecto-sp13_S_contig14794.3654.1 vs. uniprot
Match: A0A7S3UWW5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWW5_HETAK)

HSP 1 Score: 285 bits (730), Expect = 3.490e-93
Identity = 136/198 (68.69%), Postives = 160/198 (80.81%), Query Frame = 1 
Query:    1 YPAPSANIMEPAPGFKAKAVVDGDIVDVSTDDYKGKWVVLLFYPKDWTFVCPTEIIAFSDRHSEFEALGAQVLGISTDTEDSHLAWTRHPRKRGGLGHMRIPLVADPTKEISADYGVLIPSLGIALRGLFIINPEGILEQASLSVTINNLGIGRDVDETLRLIQAHQFLAKHGEVCPAGWKPGDKTMKPGLDASMEYF 594
            Y    A I +PAP FKA AVVDG+I +V   DY+GKW VLLFYPKD+TFVCPTEIIAFSD    F+AL A+VL +STDTE+SHLAW R PRKRGGLGHM+IP+VAD TK ISADYGVL+  +GIALRGLF+INPEG+LEQ    +T+NNL +GR VDETLRL+QA QF+A+HGEVCPA WKPG+KTM P  + S+ YF
Sbjct:   60 YSPSEAKIGKPAPTFKAGAVVDGEITEVDLGDYRGKWTVLLFYPKDFTFVCPTEIIAFSDAAPRFKALNAEVLALSTDTEESHLAWIRTPRKRGGLGHMQIPIVADVTKAISADYGVLLEDIGIALRGLFLINPEGVLEQ----ITVNNLPVGRSVDETLRLLQAFQFVAEHGEVCPANWKPGEKTMIPDPEGSLAYF 253
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BLAST of mRNA_Ecto-sp13_S_contig14794.3654.1 vs. uniprot
Match: A0A7S0QX20_9CHLO (Thioredoxin-dependent peroxiredoxin n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QX20_9CHLO)

HSP 1 Score: 285 bits (728), Expect = 8.970e-93
Identity = 135/198 (68.18%), Postives = 159/198 (80.30%), Query Frame = 1 
Query:    1 YPAPSANIMEPAPGFKAKAVVDGDIVDVSTDDYKGKWVVLLFYPKDWTFVCPTEIIAFSDRHSEFEALGAQVLGISTDTEDSHLAWTRHPRKRGGLGHMRIPLVADPTKEISADYGVLIPSLGIALRGLFIINPEGILEQASLSVTINNLGIGRDVDETLRLIQAHQFLAKHGEVCPAGWKPGDKTMKPGLDASMEYF 594
            YP+P   + +PAP F A AVVDG+I  +S DDYKGKWVVL FYPKD+TFVCPTEIIAFSDR  EF  L  QV+  STDTE+ HLAWT+ PRK+GGLGHM+IP+VAD TK ISA YGVL+  +GIALRGLFIINPEG++EQ    +T+NNL +GR VDETLRL+ A QF+A+HGEVCPA WKPG+KTM    DASM+YF
Sbjct:   73 YPSPEVFVGKPAPTFSAGAVVDGEITSISLDDYKGKWVVLFFYPKDFTFVCPTEIIAFSDRAKEFADLNCQVIAASTDTEECHLAWTKTPRKKGGLGHMQIPIVADVTKAISAQYGVLLEDIGIALRGLFIINPEGVVEQ----MTVNNLPVGRCVDETLRLLTAFQFVAEHGEVCPANWKPGEKTMVADPDASMDYF 266
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BLAST of mRNA_Ecto-sp13_S_contig14794.3654.1 vs. uniprot
Match: A0A4D9CSY7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSY7_9STRA)

HSP 1 Score: 283 bits (724), Expect = 1.950e-92
Identity = 133/198 (67.17%), Postives = 162/198 (81.82%), Query Frame = 1 
Query:    1 YPAPSANIMEPAPGFKAKAVVDGDIVDVSTDDYKGKWVVLLFYPKDWTFVCPTEIIAFSDRHSEFEALGAQVLGISTDTEDSHLAWTRHPRKRGGLGHMRIPLVADPTKEISADYGVLIPSLGIALRGLFIINPEGILEQASLSVTINNLGIGRDVDETLRLIQAHQFLAKHGEVCPAGWKPGDKTMKPGLDASMEYF 594
            Y  P+  + + AP F A AVVDG++  +S  DYKGK+V LLFYPKD+TFVCPTEIIA+SD    FE +GA+V+GISTDTE+SHLAW R PRKRGGLGHM+IPLVAD TK I+ADYGVL+  +GIALRGLF+I+PEG+L+Q    +T+NNL +GR+VDET+RLIQA QF+AKHGEVCPAGW PGDKTMK   + S+EYF
Sbjct:   47 YSPPAVKVGQAAPDFTAGAVVDGELTKISLADYKGKYVALLFYPKDFTFVCPTEIIAYSDAAHRFEDIGAKVIGISTDTEESHLAWVRTPRKRGGLGHMQIPLVADVTKTIAADYGVLLEDIGIALRGLFLIDPEGVLQQ----ITVNNLPVGRNVDETIRLIQAFQFVAKHGEVCPAGWTPGDKTMKADPEGSLEYF 240
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BLAST of mRNA_Ecto-sp13_S_contig14794.3654.1 vs. uniprot
Match: A0A250X1E8_9CHLO (Thioredoxin-dependent peroxiredoxin n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X1E8_9CHLO)

HSP 1 Score: 275 bits (704), Expect = 4.590e-89
Identity = 135/198 (68.18%), Postives = 157/198 (79.29%), Query Frame = 1 
Query:    1 YPAPSANIMEPAPGFKAKAVVDGDIVDVSTDDYKGKWVVLLFYPKDWTFVCPTEIIAFSDRHSEFEALGAQVLGISTDTEDSHLAWTRHPRKRGGLGHMRIPLVADPTKEISADYGVLIPSLGIALRGLFIINPEGILEQASLSVTINNLGIGRDVDETLRLIQAHQFLAKHGEVCPAGWKPGDKTMKPGLDASMEYF 594
            YP  S  + +PAP F   AVVDG+I  VS  DYKGK+VVL FYPKD+TFVCPTEIIAFSDR  EFEAL  QV+  STDTE+ HLAWTR PR RGGLG M+IP++AD TKEISA YGVLI SLGIA RGLFIINP+G+++Q    +T+N+L IGR VDETLRL+QA QF+A+HGEVCPA WKPG+KTM    + SMEYF
Sbjct:   81 YPPSSVFVGKPAPDFSTNAVVDGEIKKVSLSDYKGKYVVLFFYPKDFTFVCPTEIIAFSDRAKEFEALNCQVIATSTDTEECHLAWTRTPRSRGGLGFMQIPILADVTKEISARYGVLIESLGIAHRGLFIINPQGVIQQ----ITVNDLPIGRSVDETLRLLQAIQFVAEHGEVCPANWKPGEKTMVADPEKSMEYF 274
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BLAST of mRNA_Ecto-sp13_S_contig14794.3654.1 vs. uniprot
Match: A0A7R9Z1B7_9CHLO (Thioredoxin-dependent peroxiredoxin (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9Z1B7_9CHLO)

HSP 1 Score: 268 bits (686), Expect = 9.730e-87
Identity = 131/198 (66.16%), Postives = 154/198 (77.78%), Query Frame = 1 
Query:    1 YPAPSANIMEPAPGFKAKAVVDGDIVDVSTDDYKGKWVVLLFYPKDWTFVCPTEIIAFSDRHSEFEALGAQVLGISTDTEDSHLAWTRHPRKRGGLGHMRIPLVADPTKEISADYGVLIPSLGIALRGLFIINPEGILEQASLSVTINNLGIGRDVDETLRLIQAHQFLAKHGEVCPAGWKPGDKTMKPGLDASMEYF 594
            YP P+  + E AP F A AVVDG+I  VS  DY+GK+VVL FYPKD+TFVCPTEIIAFSDR  EFEAL  Q++  STDTE+ HLAW R PR RGGLG+M+IP++AD TKEI+A YGVLI  +GIA RGLFIINP G++EQ    +T+NNL IGR VDETLRL+ A +F+ KHGEVCPA WKPG+KTM    D SMEYF
Sbjct:   59 YPPPTVFVGEHAPSFTANAVVDGEIKKVSLADYRGKYVVLFFYPKDFTFVCPTEIIAFSDRAKEFEALNCQLIAASTDTEECHLAWIRTPRSRGGLGYMQIPIIADTTKEIAARYGVLIEKMGIAHRGLFIINPLGVVEQ----ITVNNLPIGRSVDETLRLLNAIRFVDKHGEVCPANWKPGEKTMVADPDKSMEYF 252
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BLAST of mRNA_Ecto-sp13_S_contig14794.3654.1 vs. uniprot
Match: A0A835XZ28_9CHLO (Thioredoxin-dependent peroxiredoxin n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XZ28_9CHLO)

HSP 1 Score: 263 bits (673), Expect = 3.860e-84
Identity = 130/200 (65.00%), Postives = 152/200 (76.00%), Query Frame = 1 
Query:    1 YPAPSANIMEPAPGFKAKAVVDGDIVDVSTDDY--KGKWVVLLFYPKDWTFVCPTEIIAFSDRHSEFEALGAQVLGISTDTEDSHLAWTRHPRKRGGLGHMRIPLVADPTKEISADYGVLIPSLGIALRGLFIINPEGILEQASLSVTINNLGIGRDVDETLRLIQAHQFLAKHGEVCPAGWKPGDKTMKPGLDASMEYF 594
            YP P   +  PAPGF A AVVDG+I  VS  DY  KGK+V L FYPKD+TFVCPTEIIAFSDR  EFEAL  Q++  STDTE+ HLAW R PR RGGLG+M+IP++AD TKEISA YGVLI  LGIALRGLFIINP+G+++     VT+N+L IGR VDE LR +QA Q+ A+HGEVCPA WKPG KTM    + S+EYF
Sbjct:   87 YPPPEVRVGAPAPGFSAPAVVDGEISKVSLSDYTSKGKYVCLFFYPKDFTFVCPTEIIAFSDRAKEFEALNCQLIAASTDTEECHLAWIRTPRNRGGLGYMQIPILADTTKEISARYGVLIEKLGIALRGLFIINPQGVVQH----VTVNDLPIGRSVDEALRTLQAIQYHAEHGEVCPANWKPGSKTMVADSEKSLEYF 282
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BLAST of mRNA_Ecto-sp13_S_contig14794.3654.1 vs. uniprot
Match: A0A5J4XFK5_9CHLO (Thioredoxin-dependent peroxiredoxin n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XFK5_9CHLO)

HSP 1 Score: 262 bits (670), Expect = 6.470e-84
Identity = 124/198 (62.63%), Postives = 155/198 (78.28%), Query Frame = 1 
Query:    1 YPAPSANIMEPAPGFKAKAVVDGDIVDVSTDDYKGKWVVLLFYPKDWTFVCPTEIIAFSDRHSEFEALGAQVLGISTDTEDSHLAWTRHPRKRGGLGHMRIPLVADPTKEISADYGVLIPSLGIALRGLFIINPEGILEQASLSVTINNLGIGRDVDETLRLIQAHQFLAKHGEVCPAGWKPGDKTMKPGLDASMEYF 594
            YPA  A +  PAP F A AV+DG+I +VS  +YKG++V+L FYPKD+TFVCPTEIIAFS+R  +FE L  Q++  S DTE++HLAW + PRK+GGLG M+IP++AD TKEI+A YGVL+   G+ALRGLFIINP+G+LEQ+    TINNL IGR VDE LRL+QA QF A+HGEVCPA WKPG K+M P  + S+EYF
Sbjct:   78 YPAAEAFVSAPAPDFTAPAVIDGEISEVSLKNYKGQYVILFFYPKDFTFVCPTEIIAFSERAKQFEQLNCQLIAASCDTEETHLAWIKTPRKKGGLGIMQIPIMADTTKEIAARYGVLVKDKGVALRGLFIINPQGVLEQS----TINNLPIGRSVDEALRLLQAIQFTAEHGEVCPANWKPGSKSMVPDAEKSLEYF 271
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14794.3654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6K3_ECTSI7.770e-13897.982-cys peroxiredoxin n=1 Tax=Ectocarpus siliculosus... [more]
A0A6V1NN04_HETAK4.130e-9568.69Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YLA5_9STRA2.510e-9470.622-cys peroxiredoxin n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S3UWW5_HETAK3.490e-9368.69Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0QX20_9CHLO8.970e-9368.18Thioredoxin-dependent peroxiredoxin n=1 Tax=Pyrami... [more]
A0A4D9CSY7_9STRA1.950e-9267.17Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A250X1E8_9CHLO4.590e-8968.18Thioredoxin-dependent peroxiredoxin n=1 Tax=Chlamy... [more]
A0A7R9Z1B7_9CHLO9.730e-8766.16Thioredoxin-dependent peroxiredoxin (Fragment) n=1... [more]
A0A835XZ28_9CHLO3.860e-8465.00Thioredoxin-dependent peroxiredoxin n=1 Tax=Edapho... [more]
A0A5J4XFK5_9CHLO6.470e-8462.63Thioredoxin-dependent peroxiredoxin n=1 Tax=Trebou... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14794contigEcto-sp13_S_contig14794:2..4291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score386.0
Seed ortholog evalue1e-104
Seed eggNOG ortholog2880.D7G6K3
Model size594
KEGG rclassRC01003,RC01872
KEGG koko:K03386,ko:K03671,ko:K11186,ko:K13279,ko:K20011
KEGG ReactionR08360,R08362
KEGG Pathwayko00480,ko01100,ko04146,ko04214,ko04621,ko05418,map00480,map01100,map04146,map04214,map04621,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004791,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006109,GO:0006950,GO:0006979,GO:0008047,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009636,GO:0009642,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019222,GO:0019725,GO:0019904,GO:0030234,GO:0031976,GO:0031984,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043085,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044092,GO:0044093,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0080090,GO:0097237,GO:0098754,GO:0098772,GO:0098869,GO:1990748
Exons6
EggNOG free text desc.peroxiredoxin activity
EggNOG OGsCOG0450@1,COG0526@1,KOG0852@2759,KOG0907@2759
EC1.11.1.15
Cds size570
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14794.3654.1prot_Ecto-sp13_S_contig14794.3654.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14794 2..4267 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462788.8410585-CDS-Ecto-sp13_S_contig14794:1..731681462788.8410585-CDS-Ecto-sp13_S_contig14794:1..73Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14794 2..73 -
1681462788.853829-CDS-Ecto-sp13_S_contig14794:577..6671681462788.853829-CDS-Ecto-sp13_S_contig14794:577..667Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14794 578..667 -
1681462788.8633344-CDS-Ecto-sp13_S_contig14794:1278..14111681462788.8633344-CDS-Ecto-sp13_S_contig14794:1278..1411Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14794 1279..1411 -
1681462788.8729594-CDS-Ecto-sp13_S_contig14794:2581..26671681462788.8729594-CDS-Ecto-sp13_S_contig14794:2581..2667Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14794 2582..2667 -
1681462788.8848464-CDS-Ecto-sp13_S_contig14794:3208..32861681462788.8848464-CDS-Ecto-sp13_S_contig14794:3208..3286Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14794 3209..3286 -
1681462788.8976536-CDS-Ecto-sp13_S_contig14794:4156..42671681462788.8976536-CDS-Ecto-sp13_S_contig14794:4156..4267Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14794 4157..4267 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462788.9102886-UTR-Ecto-sp13_S_contig14794:4267..42911681462788.9102886-UTR-Ecto-sp13_S_contig14794:4267..4291Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14794 4268..4291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14794.3654.1

>prot_Ecto-sp13_S_contig14794.3654.1 ID=prot_Ecto-sp13_S_contig14794.3654.1|Name=mRNA_Ecto-sp13_S_contig14794.3654.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=190bp
MEPAPGFKAKAVVDGDIVDVSTDDYKGKWVVLLFYPKDWTFVCPTEIIAF
SDRHSEFEALGAQVLGISTDTEDSHLAWTRHPRKRGGLGHMRIPLVADPT
KEISADYGVLIPSLGIALRGLFIINPEGILEQASLSVTINNLGIGRDVDE
TLRLIQAHQFLAKHGEVCPAGWKPGDKTMKPGLDASMEYF
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mRNA from alignment at Ecto-sp13_S_contig14794:2..4291-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14794.3654.1 ID=mRNA_Ecto-sp13_S_contig14794.3654.1|Name=mRNA_Ecto-sp13_S_contig14794.3654.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4290bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14794:2..4291- (Ectocarpus species13 EcNAP12_S_4_19m)
TACCCCGCCCCCTCCGCCAATATCATGGAGCCGGCACCTGGGTTCAAGGC
CAAGGCGGTGGTCGACGGCGACATCGTCGACGTCAGCACGGACGACTACA
AGGGAAAGTGGGTCGTTCTTCTCTTCTACCCGAAGGTAATATATATCAAC
GGACGGACACGGACACCCGTTCTGTTGTCGGGATAGGTAGAGTTTTGGTC
AAGGGCTCGAGAGTTTGGTTGTTTGATCACCGACTCGATTCGATCTGAAG
TTGGGGGCACAAGCGATGGTACATATTGCATGCGGGTAGGGGGGCTCTGT
CTCGCCTTCGTGCTGCATCCTGAGCTGAGCGTGCGGTGCTATGGCATTGA
AATGAGGCCGGGGTTAGGCGACTTGCCGGGCAAGGAATAGGCTCAGGCCA
TTTTCTCGAAGCGGTAGTCGAGAGCCGGGGGGCGAGAATGGATGGCATTA
TACCATGCACAGGTGTGCCGGTCGTATGCTCCTCTCTTCGCTCTCCAAGG
CGAACCTACTAATTGCCGATAATGGGATTTTCTTGGAGGGGGCGTGTGGC
TTGACGCTGTGTGATTGAAGCCAACGTTTGGCTACGCTCTCGACGTGTAC
GAGGAAAGGGTTTGCACCGATGTTGGAGAATTTAAATATTCCCGTCAAGA
TTCAGGTCATGGTGAGATTTCGCAGACGGAGTCACAGCCTTGTGTGGTGC
ACTGTTGCTATGAACTACGACTCCCAGCCGTAGTCACCTCCGCGGCCGGT
TAAAGCCTCATCGTGTTGGGTTGGGTTGGTGTGTAACTGATGCTGCGTGG
TCGGTTGGTCGGTCGGCGCTGAGTTAGCCTTTCCTTGAAACGTAAGGTTT
GTCTGTCTGAATAGATCGGTTCTTATGTGAAGGGAACAGTTGTTATGTGA
AGGGAAACTAGCAGCGTGTACGAACGACAGGCCACAGGCCGCTGCTGTAT
TCAACTTTGCTTTCGTTGTCCTCGATTCATGTCCAATTTTGTTGCTCTTC
TGCAGGACTGGACGTTCGTGTGCCCGACAGAGATCATCGCCTTTTCTGAC
AGACACTCAGAATTCGAGGCCCTGGGCGCACAGGTAAAAATACAAAAACA
AACCCGAGGTTGTTGTAGACAGACGCTTCCTAGACCCGCTTGGCTTGCAG
TTGCGTTTCTGTATGTCCTGTGGCCTTCCTTGGGCCAAGACCAGCAAATA
ATTGAGCACGTGCCCGTCTTTCCGTGATAACCCTGCTTGGCGTCACCGAA
GGGGGTCAACGGACTAGCTCAGGCAAGAACAGAACCCCTTTGCCCCGCAC
GCAAAACGAAAGGATGATAGCAAGCTTCTAGTTCATGCTTGTGACACGTT
TCCCGGGCCAGCAAAAACTCGGCATATCACTCTGTCGCGGCGTTGTAGGG
GCACGAGGTCAACGGTCTGCCGACTACGACTTCGTTCACATGGATGGGAG
CGAATAGTGCAGCTATTGGGGGCATCATATTTGTACTTATCAACCCCCCA
AGACGACGGCGCGCCGTGCATCCGCCAGGCGTGACGGATTTGTTCCGTGT
TCGGTTGCTGTAGGTCCTGACTGCTTTGTTGTGTGTTTGTATGGAACCGG
ACGCGCTGTGCGTGTTGCATGAAGGTCCTGGGGATCTCGACGGACACCGA
GGACAGCCACCTGGCGTGGACGCGGCACCCCCGAAAGAGGGGAGGGCTGG
GGCACATGAGGTGCGCGTAATTTGTACCACCTGCCACTCATAATCCAATA
CTCACTCAATGGCTGGTTGTATACATGTTGAGAGACCTCTATCCAGCACC
CTCCTCTTCCCTCCGTCTCACAAAGAAAATTTTGAGCATCCGCGGCCACA
AGCAATTTCGCCTTTACCAAGGTGAAAATATCGAACATGTTGTGCCGGCG
TCTTCACCAAGTCATTCCTGCTACTGTATTGCTCTTGGCCCAAGATCAGT
TGATGTAAGTACCGGTTTGTGGATGAGGCCTCCAGCTTGGAGGCCGGAGG
GCCAACCCAGACCTTCACGCCCGCAAGTGGAACAGCCACGGGCGCTCTAC
ATTCAGCGTGGTGCTGGACCAGGTGCCCCGACATAGCGGGAGAGGGGTAA
GCAGAGGCCAAGTGCTGGTACGGAGAAAATTCTACCGCGTTTGGCGCAGA
GACGTTTCCACCGGCGGACTCAGCACAATGCCACCGCCGCGAAGAAGATG
ATCGGAGTCCCACCCAGGAGGGTGGCGATCGCTGTGCGGACAACCTGCAC
GCCGGTGTATCGATGTTGAGCCGGTCAACATACTCCCGACGACGACCTCG
AGAACGTGGTAGGCGCCAACCGGATGATGATCTCCCATGAGGAGGGCCGT
GGAATGGCATCGGCCACGCTGTTCGCCGCCGTTGGAGTAACCCACGTAGT
GAGGGAGAAAGAGAAATGCATGCTCTACCTCGAGGTCAAACAAGCGGGCA
TACATGTCGTGCATATGATGCGGTTCTTCGCCCGCCGCCCGCGGTCGAAG
GAGACCAATTGCCGAGACCCGAACCCTGCAGCCGGTCCGCAGCCTGCAGT
CGGTCGGCAGCCTGCAGCCGGTCGGTACCTACCACCGGTCCGAAGGCGGT
AGATTTCGACGGGAGCTGATGCTGCGGCTTGCCCTGGTTGCGCGGTCGGC
GTCCATTTGGCCCGAGTTCCTGGGACCTCTCCATCATTTTCTGTTCTCCG
ATGTTCTCGCGTAGTCATGGTAGGGAGAAAGACATTGATCGGCTGTGTGC
AATGTCTCAAAACGCTCACCTGCATGGAGTTTTGTGCCTAATTTTTCACT
TCAAGTATTTCGTTTGTGTGCACCCGATTTTACTATTTGGTCTGGGGGGG
CTCCGCTTCATCCGATCTTGTGCCTTGCAGGATCCCCCTCGTCGCCGACC
CCACGAAGGAGATTTCGGCGGACTACGGGGTGCTGATCCCGTCTCTCGGG
ATCGCTCTCAGGGGGCTCTTCATCATCAACCCTGAGGGCATTCTCGAACA
GGCGAGCTTGTCGGTATCGCCGGAATTTCTGTCGTATGTAGCATGTGTTG
TTGAAGGAACAGCTGACCCTTAGCAACCGGCAGAACTGGAGCGGTGGTCA
GAAGTGAGGTGAAATTTGTTGATTCGAAAAGGGCTCGTGGTCTGCAAGCG
TATGGAATTCAGAATTGGAATGGAACGAACATTCCGTTGATTCCTACCGG
AAAATCGTTCGAAATCGGAATGAAACACGCTTGTTTTTTGATGCTGAACG
GAGAATTACTCCATCGCCACCATTCGTCCTATTTTGGACCCTGCTCGAAC
ACCGCAATCGCATTGGTACTCGATCGACGGTGCCTAAGTGCTCTTCGGCC
TGGTACCAAGTGAACTCCTTTTCCGGGTCCTGTGTCTCGCGGGTGCCGAT
GGACGCGAGGTTTGTTCTCCTCAGATGGTGGTGACACCGTGTGTCGGTGG
ATGGCTCTTCGGAGTCTCTTCCCCATCATCATCACCAACATTTTACTTCT
CGCGACCCTGCCGCAAACTTGGTGAGAAACGCTCTCATGCTGGGCTACTA
TTACCCCGTTTCCATACCCTAACGCGATCTTGGCTCCTGTTGCTGCGCCA
CAAACGTTGGTCCGAACGCTCAAGGTGACGATTAACAACCTGGGCATCGG
CAGGGATGTGGATGAGACACTTCGACTGATCCAGGCACACCAGTTCCTGG
CAAAGCACGGCGAGGTAGGGGCGCTGGTGGGCAGATGGATACCGACGTAA
CTAGAACAAATATTTGTGCTATATGGGGGCAAATTCACTCCTGTTTCTGT
CGCCCTTTGGGAATGGAGTCATTTTGAAACAAAGGTGCATGTGCCTACCT
GGAGAGTCTCGAGGCCAATCGTGTGTGGTGTTCTCGACACCCGGTGGGGG
TACGAATGCTCGGATCTGCTGCCTCCAGCACAGCAACTACGTGTTCAAGT
ACACTACTTCGTCGCCCTTTTCGCCTCCCATGCTATCTCGCAACGAGTAG
CGGGCTTCAGACGAGGCGAGGGCTATCCCACTAACGGTTATCAACATGGA
TATCCGATACCCAACGTCGATGTACTGTAATCACCTTTGCAAGGTTGTGT
GGCCGCAACGACCGCCACCAGCGTGGTGATAGGCGGACCCTTCCTTGCCT
CGGGCTTCCCTGCTCCGACGCTCCTCCTGCAACGATTCGAACGAAACGAC
CATTGCGCCCGCGTTCAGGTGTGCCCGGCCGGGTGGAAGCCGGGAGACAA
GACGATGAAGCCCGGCTTGGACGCGTCCATGGAGTACTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14794:2..4291-

>mRNA_Ecto-sp13_S_contig14794.3654.1 ID=mRNA_Ecto-sp13_S_contig14794.3654.1|Name=mRNA_Ecto-sp13_S_contig14794.3654.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14794:2..4291- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCCGGCACCTGGGTTCAAGGCCAAGGCGGTGGTCGACGGCGACAT
CGTCGACGTCAGCACGGACGACTACAAGGGAAAGTGGGTCGTTCTTCTCT
TCTACCCGAAGGACTGGACGTTCGTGTGCCCGACAGAGATCATCGCCTTT
TCTGACAGACACTCAGAATTCGAGGCCCTGGGCGCACAGGTCCTGGGGAT
CTCGACGGACACCGAGGACAGCCACCTGGCGTGGACGCGGCACCCCCGAA
AGAGGGGAGGGCTGGGGCACATGAGGATCCCCCTCGTCGCCGACCCCACG
AAGGAGATTTCGGCGGACTACGGGGTGCTGATCCCGTCTCTCGGGATCGC
TCTCAGGGGGCTCTTCATCATCAACCCTGAGGGCATTCTCGAACAGGCGA
GCTTGTCGGTGACGATTAACAACCTGGGCATCGGCAGGGATGTGGATGAG
ACACTTCGACTGATCCAGGCACACCAGTTCCTGGCAAAGCACGGCGAGGT
GTGCCCGGCCGGGTGGAAGCCGGGAGACAAGACGATGAAGCCCGGCTTGG
ACGCGTCCATGGAGTACTTC
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