mRNA_Ecto-sp13_S_contig14786.3649.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14786.3649.1
Unique NamemRNA_Ecto-sp13_S_contig14786.3649.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14786.3649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14786contigEcto-sp13_S_contig14786:2816..3216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size153
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462788.3761108-UTR-Ecto-sp13_S_contig14786:2815..28191681462788.3761108-UTR-Ecto-sp13_S_contig14786:2815..2819Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14786 2816..2819 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462788.3848808-CDS-Ecto-sp13_S_contig14786:2819..28941681462788.3848808-CDS-Ecto-sp13_S_contig14786:2819..2894Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14786 2820..2894 +
1681462788.3950067-CDS-Ecto-sp13_S_contig14786:3138..32161681462788.3950067-CDS-Ecto-sp13_S_contig14786:3138..3216Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14786 3139..3216 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14786.3649.1prot_Ecto-sp13_S_contig14786.3649.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14786 2820..3216 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14786.3649.1

>prot_Ecto-sp13_S_contig14786.3649.1 ID=prot_Ecto-sp13_S_contig14786.3649.1|Name=mRNA_Ecto-sp13_S_contig14786.3649.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
MDRTRLPRRRPQHSPAGQMANHVLHAESCLLQAYRCVEPAIGIGSSGNEF
E
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mRNA from alignment at Ecto-sp13_S_contig14786:2816..3216+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14786.3649.1 ID=mRNA_Ecto-sp13_S_contig14786.3649.1|Name=mRNA_Ecto-sp13_S_contig14786.3649.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=401bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14786:2816..3216+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATCATGGATCGTACACGCCTTCCTCGTCGACGTCCTCAACATTCACCCG
CGGGCCAAATGGCCAACCACGTGCTACACGTACGTGAATACGTGCGCTGC
GGTGACGTGAATGCAAGACAAGATGTGGTGTTTTGTCGTGGTGATGTAGC
GGGGTGGGGGGATTGGATCCTCCCCTGGGGTTTGAGGAAAGAACGAGAGA
GAGCAATACTGTGAGACTGAAACTCCTTGTGTCAGCTAACCGATTCCAGG
GCCTGTTGCAATCGACCTCGCTCACCTTCGCCTCTACACCCTTTCGCCTC
AACAATCTGGTCTGCGCCAATAGGCCGAATCCTGCCTCTTGCAAGCGTAC
CGCTGTGTGGAGCCAGCGATCGGGATCGGAAGCTCAGGGAACGAGTTTGA
A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14786:2816..3216+

>mRNA_Ecto-sp13_S_contig14786.3649.1 ID=mRNA_Ecto-sp13_S_contig14786.3649.1|Name=mRNA_Ecto-sp13_S_contig14786.3649.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14786:2816..3216+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATCGTACACGCCTTCCTCGTCGACGTCCTCAACATTCACCCGCGGG
CCAAATGGCCAACCACGTGCTACACGCCGAATCCTGCCTCTTGCAAGCGT
ACCGCTGTGTGGAGCCAGCGATCGGGATCGGAAGCTCAGGGAACGAGTTT
GAA
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