mRNA_Ecto-sp13_S_contig14776.3645.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14776.3645.1
Unique NamemRNA_Ecto-sp13_S_contig14776.3645.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14776.3645.1 vs. uniprot
Match: A0A6H5KG87_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG87_9PHAE)

HSP 1 Score: 271 bits (693), Expect = 2.490e-85
Identity = 140/203 (68.97%), Postives = 158/203 (77.83%), Query Frame = 2
Query:  200 GGSRRVQGDDICCFCRERKT*SSKRNQGYGGHRGVRNVEEGIGFKDYLHGPKDAGTKLKVKFRTGDIGLRERSRRLRKEDDEDAKFKCNCGSECEDRVHVVAECRLYK-EREVYTTELGKVEES-TQMFEAWDSQEKALAILGHRKWVEKAGSEIGRIDGLGKTLFSHLWQDRKERLAIGDRSCYNNAPSYRGRVVNGLTAKA 802
            GGS  VQG+DICC CRER+T S  R QG GG R VRNVEEGIGF+D+LHGP DAGTKLKVKF  GDIGLRE  R  R  DDED +FKC+CG ECEDRV V+AEC  YK ER VY TEL K + +  +MFEAW+ +E+ +A+LGHR+WVEKAG +I RID L KT FSH+WQ  KERLAIGDRSC  NAPS RGRVVN LTAKA
Sbjct:  204 GGSTGVQGEDICCLCRERRTDSKGRIQGQGGSRSVRNVEEGIGFEDFLHGPMDAGTKLKVKFSVGDIGLRELRRGHRTVDDEDDEFKCDCGFECEDRVDVLAECPWYKKERGVYVTELRKTDGTYREMFEAWNREERKVAVLGHRRWVEKAGRDIVRIDRLEKTFFSHVWQSGKERLAIGDRSCGKNAPSSRGRVVNDLTAKA 406          
BLAST of mRNA_Ecto-sp13_S_contig14776.3645.1 vs. uniprot
Match: A0A6H5LRL5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRL5_9PHAE)

HSP 1 Score: 271 bits (692), Expect = 3.610e-84
Identity = 134/175 (76.57%), Postives = 150/175 (85.71%), Query Frame = 2
Query:  311 VEEGIGFKDYLHGPKDAGTKLKVKFRTGDIGLRERSRRLRKEDDEDAKFKCNCGSECEDRVHVVAECRLYK-EREVYTTELGKVEES-TQMFEAWDSQEKALAILGHRKWVEKAGSEIGRIDGLGKTLFSHLWQDRKERLAIGDRSCYNNAPSYRGRVVNGLTAKACKTSRVTPP 829
            ++EGIGFKDYLHGP DAGTKLKVKFRTGDIGLRER RR R  D+ED +FKC+CG ECEDRVHVVAEC LYK EREVY TELGK++ +  +MFEAW+ +E+ +A+LGHR+WVEKAG +I RID LGKT  SHLWQ RKERLAIGDRSC NNAPS RGRVVNGLTAKACKT RV PP
Sbjct:  279 LKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKTQRVRPP 453          
BLAST of mRNA_Ecto-sp13_S_contig14776.3645.1 vs. uniprot
Match: A0A6H5KVX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX2_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 1.260e-81
Identity = 136/198 (68.69%), Postives = 156/198 (78.79%), Query Frame = 2
Query:  224 DDICCFCRERKT*SSKRNQGYGGHRGVRNVEEGIGFKDYLHGPKDAGTKLKVKFRTGDIGLRERSRRLRKEDDEDAKFKCNCGSECEDRVHVVAECRLYK-EREVYTTELGKVEES-TQMFEAWDSQEKALAILGHRKWVEKAGSEIGRIDGLGKTLFSHLWQDRKERLAIGDRSCYNNAPSYRGRVVNGLTAKACKT 811
            + I   C ER+    K ++   G      ++EGIGFKDYLHGP DAGTKLKVKFRTGDIGLRER RR R  D+ED +FKC+CG ECEDRVHVVAEC LYK EREVY TELGK++ +  +MFEAW+ +E+ +A+LGHR+WVEKAG +I RID LGKT  SHLWQ RKERLAIGDRSC NNAPS RGRVVNGLTAKACKT
Sbjct:  301 EKISVACAEREQNLRKESKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 498          
BLAST of mRNA_Ecto-sp13_S_contig14776.3645.1 vs. uniprot
Match: A0A6H5KJX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX4_9PHAE)

HSP 1 Score: 249 bits (636), Expect = 4.130e-80
Identity = 126/169 (74.56%), Postives = 141/169 (83.43%), Query Frame = 2
Query:  311 VEEGIGFKDYLHGPKDAGTKLKVKFRTGDIGLRERSRRLRKEDDEDAKFKCNCGSECEDRVHVVAECRLYK-EREVYTTELGKVEES-TQMFEAWDSQEKALAILGHRKWVEKAGSEIGRIDGLGKTLFSHLWQDRKERLAIGDRSCYNNAPSYRGRVVNGLTAKACKT 811
            ++EGIGFKDYLHGP DAGTKLKVKFRTGDIGLRER RR R  D+ED +FKC+CG ECEDRVHVVAE   YK EREVY TEL K++ +  +MFEAW+ +E+ +A+LGHR+WVEKAG  I RID LGKT  SHLWQ RKERLA GDRSC NNAPS RGRVVNGLTAKACKT
Sbjct:    2 LKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAERPWYKKEREVYVTELEKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRGIVRIDRLGKTFLSHLWQSRKERLAFGDRSCGNNAPSSRGRVVNGLTAKACKT 170          
BLAST of mRNA_Ecto-sp13_S_contig14776.3645.1 vs. uniprot
Match: A0A6H5J590_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J590_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 5.150e-80
Identity = 127/169 (75.15%), Postives = 144/169 (85.21%), Query Frame = 2
Query:  311 VEEGIGFKDYLHGPKDAGTKLKVKFRTGDIGLRERSRRLRKEDDEDAKFKCNCGSECEDRVHVVAECRLYK-EREVYTTELGKVEES-TQMFEAWDSQEKALAILGHRKWVEKAGSEIGRIDGLGKTLFSHLWQDRKERLAIGDRSCYNNAPSYRGRVVNGLTAKACKT 811
            ++EGIGFKDYLHGP DAGTKLKVKFRTGDIGLRER RR R  D+ED +FKC+CG ECEDRVHVVAEC LYK ERE+Y TELGK++ +  +MFEAW+ +E+ +A+LGHR+WVEKAG +I RID LGKT  SHLWQ RKERLAIGDRSC NNAPS RGRVVNG TA ACKT
Sbjct:  204 LKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYKKERELYMTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGQTAMACKT 372          
BLAST of mRNA_Ecto-sp13_S_contig14776.3645.1 vs. uniprot
Match: A0A6H5KMG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG6_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 7.420e-80
Identity = 127/169 (75.15%), Postives = 144/169 (85.21%), Query Frame = 2
Query:  311 VEEGIGFKDYLHGPKDAGTKLKVKFRTGDIGLRERSRRLRKEDDEDAKFKCNCGSECEDRVHVVAECRLYK-EREVYTTELGKVEES-TQMFEAWDSQEKALAILGHRKWVEKAGSEIGRIDGLGKTLFSHLWQDRKERLAIGDRSCYNNAPSYRGRVVNGLTAKACKT 811
            ++EGIGFKDYLHGP DAGTKLKVKFRTGDIGLRER RR R  D+ED +FKC+CG ECEDRVHVVAEC LYK EREVY TELGK++ +  +MFEAW+ +E+ +A++GHR+WVEKAG +I RID LGKT  SHLWQ RKERLAIGDRSC NNAPS  G VVNGLTAKACKT
Sbjct:  193 LKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVVGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSGGCVVNGLTAKACKT 361          
BLAST of mRNA_Ecto-sp13_S_contig14776.3645.1 vs. uniprot
Match: A0A6H5KBA0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBA0_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 1.460e-79
Identity = 129/170 (75.88%), Postives = 144/170 (84.71%), Query Frame = 2
Query:  311 VEEGIGFKDYLHGPKDAGTKLKVKFRTGDIGLRERSRRLRKEDDEDAKFKCNCGSECEDRVHVVAECRLYK-EREVYTTELGKVEES-TQMFEAWDSQEKALAILGHRKWVEKAGSEIGRIDGL-GKTLFSHLWQDRKERLAIGDRSCYNNAPSYRGRVVNGLTAKACKT 811
            +EEGI FKDYLHG  DAGTKLKVKFRTGDIGLRER RR R  D+ED +FKC+CG ECEDRVHVVAEC LYK EREVY TELGK + + T+MFEAW+ +E+ +A+LGHR+WVEKAG +I RID L GKTL SHLW+ RKERLAIGDRSC NNAPS RGRVVNGLTAK CKT
Sbjct:  135 LEEGIRFKDYLHGLMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTELGKTDRTHTEMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLIGKTLLSHLWRSRKERLAIGDRSCGNNAPSSRGRVVNGLTAKTCKT 304          
BLAST of mRNA_Ecto-sp13_S_contig14776.3645.1 vs. uniprot
Match: A0A6H5JB24_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB24_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 3.590e-79
Identity = 128/169 (75.74%), Postives = 144/169 (85.21%), Query Frame = 2
Query:  311 VEEGIGFKDYLHGPKDAGTKLKVKFRTGDIGLRERSRRLRKEDDEDAKFKCNCGSECEDRVHVVAECRLYK-EREVYTTELGKVEES-TQMFEAWDSQEKALAILGHRKWVEKAGSEIGRIDGLGKTLFSHLWQDRKERLAIGDRSCYNNAPSYRGRVVNGLTAKACKT 811
            ++EGIGFKDYLHGP DAGTKLKVKFRTGDIGLRER RR R  D+ED +FKC+CG ECEDRVHVVAEC LYK EREVY TELGK++ +  +MFEAW+ +E+ +A+LGHR+WVEKAG +I RID LGKTL SHLWQ RKERLA GDRSC NNAPS RGRVVNGLT K CKT
Sbjct:  349 LKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTLLSHLWQSRKERLASGDRSCGNNAPSSRGRVVNGLTVKTCKT 517          
BLAST of mRNA_Ecto-sp13_S_contig14776.3645.1 vs. uniprot
Match: A0A6H5KUW5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUW5_9PHAE)

HSP 1 Score: 261 bits (666), Expect = 1.410e-78
Identity = 129/169 (76.33%), Postives = 146/169 (86.39%), Query Frame = 2
Query:  311 VEEGIGFKDYLHGPKDAGTKLKVKFRTGDIGLRERSRRLRKEDDEDAKFKCNCGSECEDRVHVVAECRLYK-EREVYTTELGKVEES-TQMFEAWDSQEKALAILGHRKWVEKAGSEIGRIDGLGKTLFSHLWQDRKERLAIGDRSCYNNAPSYRGRVVNGLTAKACKT 811
            ++EGIGFKDYLHGP DAGTKLKVKFRTGDIGLRER RR R  D+ED +FKC+CG ECEDRVHVVAEC LYK EREVY TELGK++ +  +MFEAW+ +E+ +A+LGHR+WVEKAG +I RID LGKT  SHLWQ RKERLAIGDRSC NNAPS RGRVVNGL+AKACKT
Sbjct:  496 LKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNGLSAKACKT 664          
BLAST of mRNA_Ecto-sp13_S_contig14776.3645.1 vs. uniprot
Match: A0A6H5KS87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS87_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 6.880e-78
Identity = 127/172 (73.84%), Postives = 143/172 (83.14%), Query Frame = 2
Query:  311 VEEGIGFKDYLHGPKDAGTKLKVKFRTGDIGLRERSRRLRKEDDEDAKFKCNCGSECEDRVHVVAECRLYK-EREVYTTELGKVEES-TQMFEAWDSQEKALAILGHRKWVEKAGSEIGRIDGLGKTLFSHLWQDRKERLAIGDRSCYNNAPSYRGRVVNGLTAKACKTSRV 820
            ++EGIGFKDYLHGP DAGTKLKVKFRTGDIGLRER RR R  D+ED +FKC+CG ECEDRVHVVAEC LYK EREVY TELGK++ +  +MFEAW+ +E+ +A+LGHR+WVEKAG +I  I  LGK L SHLWQ RKERLAIGDRSC NNAPS RGRVVN LTA ACKT  V
Sbjct:  186 LKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVLGHRRWVEKAGRDIVTIARLGKALLSHLWQSRKERLAIGDRSCGNNAPSSRGRVVNSLTANACKTKEV 357          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14776.3645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KG87_9PHAE2.490e-8568.97Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LRL5_9PHAE3.610e-8476.57Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KVX2_9PHAE1.260e-8168.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJX4_9PHAE4.130e-8074.56Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J590_9PHAE5.150e-8075.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMG6_9PHAE7.420e-8075.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBA0_9PHAE1.460e-7975.88Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JB24_9PHAE3.590e-7975.74Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KUW5_9PHAE1.410e-7876.33Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KS87_9PHAE6.880e-7873.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14776contigEcto-sp13_S_contig14776:252..1177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score61.2
Seed ortholog evalue3.5e-07
Seed eggNOG ortholog2880.D8LL78
Model size926
KEGG rclassRC00022,RC00112,RC01583,RC02958
KEGG koko:K00600
KEGG ReactionR00945,R09099
KEGG Pathwayko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523
KEGG ModuleM00140,M00141,M00346,M00532
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.glycine hydroxymethyltransferase activity
EggNOG OGsCOG0112@1,KOG2467@2759
EC2.1.2.1
Cds size339
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462788.0534787-UTR-Ecto-sp13_S_contig14776:251..8251681462788.0534787-UTR-Ecto-sp13_S_contig14776:251..825Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14776 252..825 +
1681462788.0749736-UTR-Ecto-sp13_S_contig14776:1164..11771681462788.0749736-UTR-Ecto-sp13_S_contig14776:1164..1177Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14776 1165..1177 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462788.0640075-CDS-Ecto-sp13_S_contig14776:825..11641681462788.0640075-CDS-Ecto-sp13_S_contig14776:825..1164Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14776 826..1164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14776.3645.1prot_Ecto-sp13_S_contig14776.3645.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14776 826..1164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14776.3645.1

>prot_Ecto-sp13_S_contig14776.3645.1 ID=prot_Ecto-sp13_S_contig14776.3645.1|Name=mRNA_Ecto-sp13_S_contig14776.3645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MFEAWDSQEKALAILGHRKWVEKAGSEIGRIDGLGKTLFSHLWQDRKERL
AIGDRSCYNNAPSYRGRVVNGLTAKACKTSRVTPPPRLSCILLCWLSRHG
WLFSLLLPYFFS*
back to top

mRNA from alignment at Ecto-sp13_S_contig14776:252..1177+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14776.3645.1 ID=mRNA_Ecto-sp13_S_contig14776.3645.1|Name=mRNA_Ecto-sp13_S_contig14776.3645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=926bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14776:252..1177+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTACGTTCGGGACGAGACGCAAGGAAACTGACATGGCAGTATCGCATG TGCGGGATGGGAGAGGAGAGGTTACCGAGAATAGCCTGGGAGGCGAAGTG GGAAAACAAGAGGAGGGGTAGACAACACACGGAGTACGTCAAGGTTGTAG GTGACGTATGGAAAGAGTTCGAAATTGACGAAGACGATACGCTGGATACG GAGGGTCTAGGAGGGTTCAAGGAGATGACATATGTTGCTTTTGCCGAGAG AGAAAAACATAATCTTCAAAAAGAAACCAAGGATACGGAGGGCATAGAGG TGTACGGAATGTTGAAGAAGGAATAGGGTTCAAGGATTACCTTCATGGGC CAAAGGACGCAGGGACAAAGCTGAAAGTGAAATTCAGGACCGGGGACATA GGCCTTCGAGAACGTAGCCGAAGACTTCGGAAGGAAGACGATGAAGACGC CAAGTTCAAATGTAATTGCGGCTCCGAGTGCGAAGACCGTGTTCATGTAG TCGCGGAATGTCGGCTGTACAAGGAGAGGGAAGTGTACACGACTGAGCTG GGAAAAGTAGAAGAAAGTACACAGATGTTTGAGGCATGGGATAGCCAGGA GAAGGCGCTAGCTATACTGGGGCATAGGAAGTGGGTTGAAAAGGCGGGAA GTGAAATCGGGAGGATAGATGGACTAGGGAAGACATTGTTTAGCCACCTT TGGCAAGATCGGAAGGAACGATTGGCCATCGGCGATCGGTCCTGTTATAA CAATGCTCCGTCCTATCGAGGACGCGTGGTCAATGGTCTAACCGCTAAGG CATGCAAGACATCAAGAGTAACCCCCCCCCCCCGCCTCTCGTGCATTCTA CTCTGCTGGCTTTCCCGACACGGCTGGCTTTTCTCGCTTCTCCTGCCATA CTTTTTTAGCTGAGCTCATTCTACAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14776:252..1177+

>mRNA_Ecto-sp13_S_contig14776.3645.1 ID=mRNA_Ecto-sp13_S_contig14776.3645.1|Name=mRNA_Ecto-sp13_S_contig14776.3645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14776:252..1177+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTGAGGCATGGGATAGCCAGGAGAAGGCGCTAGCTATACTGGGGCA
TAGGAAGTGGGTTGAAAAGGCGGGAAGTGAAATCGGGAGGATAGATGGAC
TAGGGAAGACATTGTTTAGCCACCTTTGGCAAGATCGGAAGGAACGATTG
GCCATCGGCGATCGGTCCTGTTATAACAATGCTCCGTCCTATCGAGGACG
CGTGGTCAATGGTCTAACCGCTAAGGCATGCAAGACATCAAGAGTAACCC
CCCCCCCCCGCCTCTCGTGCATTCTACTCTGCTGGCTTTCCCGACACGGC
TGGCTTTTCTCGCTTCTCCTGCCATACTTTTTTAGCTGA
back to top