mRNA_Ecto-sp13_S_contig14771.3643.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig14771.3643.1
Unique Name	mRNA_Ecto-sp13_S_contig14771.3643.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig14771.3643.1 vs. uniprot
Match: D7G2T3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T3_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 6.950e-59
Identity = 110/188 (58.51%), Postives = 125/188 (66.49%), Query Frame = 1

Query:    1 VDKTTSSATGPTGFTKLLCFNCGEDTAGERFSFSVQLSVQRSRRYEVEPGKRGPTEEDK*ATHEARERQRDQRRRP-------GSLRGIELELQYNKVADEVIRATMEELINTPMEPGQNPDDYFNQKHFLRHKAEKMGETISDRYFKDICVTGFTNEYKDVEMIMYRDPDFNVDKMQTTMRHMFLDE 543
            +DKTTSSATG   FT+LLCFNCGEDT G   +F         +        RG    ++    + R RQ +Q+          G      L L YNKV DEVIRATMEELINTPME GQ PD YFNQKH LRHKAE+MG+TI DR F+DICVTGFT+E K+V+MIMYRDPDF VDKMQTTMR MFLDE
Sbjct:    1 MDKTTSSATGLPSFTRLLCFNCGEDTTGNGSAFESAFGSDIKKI-------RGQARTNELRLRKTR-RQLEQKHDDDTDISGDGQAAFEALNLNYNKVTDEVIRATMEELINTPMETGQTPDVYFNQKHLLRHKAEEMGKTILDRSFRDICVTGFTDEEKNVKMIMYRDPDFKVDKMQTTMRLMFLDE 180

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BLAST of mRNA_Ecto-sp13_S_contig14771.3643.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 6.230e-52
Identity = 90/99 (90.91%), Postives = 91/99 (91.92%), Query Frame = 1

Query:  247 ELELQYNKVADEVIRATMEELINTPMEPGQNPDDYFNQKHFLRHKAEKMGETISDRYFKDICVTGFTNEYKDVEMIMYRDPDFNVDKMQTTMRHMFLDE 543
            EL L YNKV DEVIRATMEELINTPMEP QNPDDYFNQKH LRHKAEKMGETISD YF D CVTGFTNEYKDV+MIMYRDPDFNVDKMQTTMRHMFLDE
Sbjct:   99 ELNLNYNKVTDEVIRATMEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDE 197

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BLAST of mRNA_Ecto-sp13_S_contig14771.3643.1 vs. uniprot
Match: A0A6H5JV98_9PHAE (Peptidase A2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV98_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 5.630e-42
Identity = 82/118 (69.49%), Postives = 94/118 (79.66%), Query Frame = 1

Query:  190 EARERQRDQRRRPGSLRGIELELQYNKVADEVIRATMEELINTPMEPGQNPDDYFNQKHFLRHKAEKMGETISDRYFKDICVTGFTNEYKDVEMIMYRDPDFNVDKMQTTMRHMFLDE 543
            EAR R RD  RR GSL+G ELE+Q           TMEELIN PMEPGQNPD YFNQ+H +R+KAEK+GETIS RYFKD+CVTG T+E+KDV+MIMYRDPDFNVDKMQTT+  +FLDE
Sbjct:   92 EARGRTRDHGRRSGSLQGTELEVQE----------TMEELINAPMEPGQNPDVYFNQRHLVRYKAEKLGETISYRYFKDMCVTGLTDEFKDVKMIMYRDPDFNVDKMQTTVSDVFLDE 199

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BLAST of mRNA_Ecto-sp13_S_contig14771.3643.1 vs. uniprot
Match: A0A6H5L2I7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2I7_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 5.430e-39
Identity = 64/94 (68.09%), Postives = 80/94 (85.11%), Query Frame = 1

Query:  262 YNKVADEVIRATMEELINTPMEPGQNPDDYFNQKHFLRHKAEKMGETISDRYFKDICVTGFTNEYKDVEMIMYRDPDFNVDKMQTTMRHMFLDE 543
            Y++V DEVIRA MEEL N PM PG+NPDDYFNQKH LR + +KMGE ISDR FKDICV GF++EYKDV+++++RDP FNV  MQ+T+R++FLDE
Sbjct:   83 YDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLVVFRDPTFNVLNMQSTVRNIFLDE 176

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BLAST of mRNA_Ecto-sp13_S_contig14771.3643.1 vs. uniprot
Match: A0A6H5JLQ5_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ5_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 8.380e-39
Identity = 66/94 (70.21%), Postives = 79/94 (84.04%), Query Frame = 1

Query:  262 YNKVADEVIRATMEELINTPMEPGQNPDDYFNQKHFLRHKAEKMGETISDRYFKDICVTGFTNEYKDVEMIMYRDPDFNVDKMQTTMRHMFLDE 543
            Y++V DEVIRA MEEL N PM PG+NPDDYFNQKH LR + +KMGE ISDR FKDICV GF++EYKDV++I+ RDP FNV  MQ+TMR++FLDE
Sbjct:   59 YDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLIVLRDPTFNVLDMQSTMRNIFLDE 152

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BLAST of mRNA_Ecto-sp13_S_contig14771.3643.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 2.400e-38
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 1

Query:  298 MEELINTPMEPGQNPDDYFNQKHFLRHKAEKMGETISDRYFKDICVTGFTNEYKDVEMIMYRDPDFNVDKMQTTMRHMFLDE 543
            ME+L NT MEPGQNPDDYFN KH LRHK EKMGE ISDRYFKD+CVTGFT+EYK+V+MIM+RDP+FNV+ MQTTM HM LDE
Sbjct:    1 MEKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNVNHMQTTMHHMALDE 82

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BLAST of mRNA_Ecto-sp13_S_contig14771.3643.1 vs. uniprot
Match: A0A6H5KVX0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX0_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.790e-37
Identity = 64/94 (68.09%), Postives = 80/94 (85.11%), Query Frame = 1

Query:  262 YNKVADEVIRATMEELINTPMEPGQNPDDYFNQKHFLRHKAEKMGETISDRYFKDICVTGFTNEYKDVEMIMYRDPDFNVDKMQTTMRHMFLDE 543
            Y++V DEVIRA MEEL N PM PG+NPDDYFNQK+ LR + +KMGE ISDR FKDICV GF++EYKDV+++++RDP FNV  MQ+TMR++FLDE
Sbjct:  126 YDRVTDEVIRAKMEELENNPMNPGENPDDYFNQKYLLRTQLDKMGEAISDRRFKDICVRGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDE 219

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BLAST of mRNA_Ecto-sp13_S_contig14771.3643.1 vs. uniprot
Match: A0A6H5JXA1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA1_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.900e-37
Identity = 64/105 (60.95%), Postives = 84/105 (80.00%), Query Frame = 1

Query:  229 GSLRGIELELQYNKVADEVIRATMEELINTPMEPGQNPDDYFNQKHFLRHKAEKMGETISDRYFKDICVTGFTNEYKDVEMIMYRDPDFNVDKMQTTMRHMFLDE 543
            G     EL+  YN+V DEVIRA +++L  T MEPG+NPDD+FN+KH LR + EKMGETISDR FKDICV GF+ +YKD++M+++RDP F+V +MQ TMR++FLDE
Sbjct:  113 GQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDE 217

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BLAST of mRNA_Ecto-sp13_S_contig14771.3643.1 vs. uniprot
Match: A0A6H5LFM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFM4_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.390e-36
Identity = 64/105 (60.95%), Postives = 83/105 (79.05%), Query Frame = 1

Query:  229 GSLRGIELELQYNKVADEVIRATMEELINTPMEPGQNPDDYFNQKHFLRHKAEKMGETISDRYFKDICVTGFTNEYKDVEMIMYRDPDFNVDKMQTTMRHMFLDE 543
            G     EL+  YN+V DEVIRA +++L  T MEPG+NPDD+FN+KH LR + EKMGETISDR FKDICV GF+ + KD++MI++RDP F+V +MQ TMR++FLDE
Sbjct:  113 GQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDCKDIKMIVFRDPSFDVQQMQATMRNIFLDE 217

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BLAST of mRNA_Ecto-sp13_S_contig14771.3643.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.930e-36
Identity = 64/94 (68.09%), Postives = 80/94 (85.11%), Query Frame = 1

Query:  262 YNKVADEVIRATMEELINTPMEPGQNPDDYFNQKHFLRHKAEKMGETISDRYFKDICVTGFTNEYKDVEMIMYRDPDFNVDKMQTTMRHMFLDE 543
            Y++V DEVIRA MEEL N PM PG+NPD+YFNQKH LR + +KMGE ISDR FKDICV GF++EYKDV+++++RDP FNV  MQ+TMR++FLDE
Sbjct:  126 YDRVTDEVIRAKMEELENNPMNPGENPDNYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMQSTMRNIFLDE 219

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig14771.3643.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig14771.3643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G2T3_ECTSI	6.950e-59	58.51	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KW66_9PHAE	6.230e-52	90.91	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JV98_9PHAE	5.630e-42	69.49	Peptidase A2 domain-containing protein n=1 Tax=Ect...	[more]
A0A6H5L2I7_9PHAE	5.430e-39	68.09	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JLQ5_9PHAE	8.380e-39	70.21	CCHC-type domain-containing protein (Fragment) n=1...	[more]
D7G6Q1_ECTSI	2.400e-38	79.27	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KVX0_9PHAE	1.790e-37	68.09	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JXA1_9PHAE	1.900e-37	60.95	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5LFM4_9PHAE	1.390e-36	60.95	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JF66_9PHAE	1.930e-36	68.09	CCHC-type domain-containing protein n=2 Tax=Ectoca...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig14771	contig	Ecto-sp13_S_contig14771:2254..3615 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	543
Hectar predicted targeting category	other localisation
Exons	2
Cds size	246

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462787.9689434-CDS-Ecto-sp13_S_contig14771:2253..2499	1681462787.9689434-CDS-Ecto-sp13_S_contig14771:2253..2499	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig14771 2254..2499 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462787.9784858-UTR-Ecto-sp13_S_contig14771:2499..2606	1681462787.9784858-UTR-Ecto-sp13_S_contig14771:2499..2606	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig14771 2500..2606 -
1681462787.987332-UTR-Ecto-sp13_S_contig14771:3425..3615	1681462787.987332-UTR-Ecto-sp13_S_contig14771:3425..3615	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig14771 3426..3615 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig14771.3643.1	prot_Ecto-sp13_S_contig14771.3643.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig14771 2254..2499 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig14771:2254..3615-
coding sequence from alignment at Ecto-sp13_S_contig14771:2254..3615-

protein sequence of mRNA_Ecto-sp13_S_contig14771.3643.1

>prot_Ecto-sp13_S_contig14771.3643.1 ID=prot_Ecto-sp13_S_contig14771.3643.1|Name=mRNA_Ecto-sp13_S_contig14771.3643.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
MEELINTPMEPGQNPDDYFNQKHFLRHKAEKMGETISDRYFKDICVTGFT
NEYKDVEMIMYRDPDFNVDKMQTTMRHMFLDE

mRNA from alignment at Ecto-sp13_S_contig14771:2254..3615-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig14771.3643.1 ID=mRNA_Ecto-sp13_S_contig14771.3643.1|Name=mRNA_Ecto-sp13_S_contig14771.3643.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1362bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14771:2254..3615- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGACAAGACAACGAGTTCAGCTACCGGACCTACTGGCTTCACCAAGCT
TCTGTGCTTTAACTGCGGAGAAGATACAGCAGGTGAACGGTTCAGCTTTT
CGGTTCAGCTTTCGGTTCAGAGATCAAGAAGATACGAGGTCGAGCCAGGC
AAACGAGGTCCGACTGAGGAAGACAAGTGAGCGACACACGGTTTCACACA
CACAAGACAGGGGCTTCACACAGTGGGAGGAGCTCCTTTAGTGCTGTAAA
CACCAAGACGTTCGCTGGAATCAAGGGCTCATACAATAGCAGATAACTGC
TGCATCACCAGCAGGGACGGTCCACACCGTGTAGTCCTATACACCCAATC
GTAACGAGAGGGTAAACAGGAGCGGGGCCGGGAAAGGACGACCTACAACC
GCAATGCTTTTGAGCAGGAGTGGGGTCGGGAAAGGACGATCCACAACCGT
TTTCCTTTTGAGCAGGAACGGGGCCGAGAAGGTCTGCAAAGTAGTCCAAT
ACACCCAACGAGAGGGTAAACAGGAGCGGGGCCGGGAAAGGACGACCTAC
AACCGCAATCCTTTTGAGCAGGAGCGTGGTCGGGAAGCCTCGGGTTCACA
CCAATAGCAATCAATTCCTACGACAGGAGGGACTGCTGCGACAGACAGCA
GGGAACATCAACATCAGTACCGTCCTGTACATCGCACGGCAACAAACAGG
AGCGCACCGCGATAGAGACGACATACCAGGATGGGTGATCATTCCCCCGG
CGACAGCACCTCCAACCTAGCTAACACCATTCCAGGGCTGAAGAAGTTCG
ACGGAAAGAACCAAGCTGAATTCAAAGGCTGGATAAAGAGGCTCTGCGTC
GTTCTCGGAGTTACGCGCAGGGACATCCTCCTGCTGCTGAAAGGCCGTTG
TAGGCCCACGGAAAGGGATGATGACTACGCCGCATTCTGCAAGTCGAACG
AGGACCTGTACGCCATACTCTACCTGCTGGCGGAACTACCGGCGTCAATT
TCGGTAGAGAAGCACGAGAACGACAGCGAGATCAGCGGAGACGGCCAGGC
AGTCTTCGAGGAATTGAACTTGAACTACAGTACAACAAAGTTGCGGACGA
AGTGATTCGAGCAACCATGGAGGAGCTGATCAACACACCCATGGAACCCG
GGCAGAACCCGGACGACTACTTCAACCAGAAGCACTTCCTACGACACAAG
GCTGAGAAGATGGGGGAAACGATCTCGGACCGCTACTTCAAGGACATATG
CGTCACCGGCTTCACCAACGAGTACAAGGACGTCGAGATGATCATGTACC
GCGACCCAGACTTCAACGTTGATAAGATGCAAACCACCATGCGTCACATG
TTCCTTGACGAG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14771:2254..3615-

>mRNA_Ecto-sp13_S_contig14771.3643.1 ID=mRNA_Ecto-sp13_S_contig14771.3643.1|Name=mRNA_Ecto-sp13_S_contig14771.3643.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14771:2254..3615- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGAGCTGATCAACACACCCATGGAACCCGGGCAGAACCCGGACGA
CTACTTCAACCAGAAGCACTTCCTACGACACAAGGCTGAGAAGATGGGGG
AAACGATCTCGGACCGCTACTTCAAGGACATATGCGTCACCGGCTTCACC
AACGAGTACAAGGACGTCGAGATGATCATGTACCGCGACCCAGACTTCAA
CGTTGATAAGATGCAAACCACCATGCGTCACATGTTCCTTGACGAG