mRNA_Ecto-sp13_S_contig1475.3630.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1475.3630.1 vs. uniprot
Match: D8LK04_ECTSI (Na+/K+-ATPase alpha 1 subunit (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK04_ECTSI) HSP 1 Score: 322 bits (826), Expect = 6.640e-110 Identity = 162/168 (96.43%), Postives = 165/168 (98.21%), Query Frame = 1
Query: 130 KNLKTQRAKELEVVETSSSYPSQVMVRKGTVVKEESLRQELLDDPEIDPPEVGGERLDWRRDGAHSRQSSLRVLVPTAASVFKWDQGGALIEGIDEATIGLLDEHRLSIKTLGERYCTDLNSERPEHSGGVNPERATQVLNMIGPNELTPPPTEPAWKLFLKELLAPL 633
KNLKTQRAKELEVVETSS +PSQVMVRKGTV KEESLRQELLDDPE+DPPEVGG RLDWRRDGAHSRQSSLRVLVPTAASVFKWDQGGALIEGIDEATIGLLDEHRLSIKTLGERYCTDLNSERPEHSGGVNPERATQVL+MIGPNELTPPPTEPAWKLFLKELLAPL
Sbjct: 46 KNLKTQRAKELEVVETSSPHPSQVMVRKGTV-KEESLRQELLDDPEVDPPEVGGGRLDWRRDGAHSRQSSLRVLVPTAASVFKWDQGGALIEGIDEATIGLLDEHRLSIKTLGERYCTDLNSERPEHSGGVNPERATQVLSMIGPNELTPPPTEPAWKLFLKELLAPL 212
BLAST of mRNA_Ecto-sp13_S_contig1475.3630.1 vs. uniprot
Match: A0A6H5JGR4_9PHAE (Cation_ATPase_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGR4_9PHAE) HSP 1 Score: 285 bits (729), Expect = 1.040e-85 Identity = 138/145 (95.17%), Postives = 140/145 (96.55%), Query Frame = 1
Query: 199 VMVRKGTVVKEESLRQELLDDPEIDPPEVGGERLDWRRDGAHSRQSSLRVLVPTAASVFKWDQGGALIEGIDEATIGLLDEHRLSIKTLGERYCTDLNSERPEHSGGVNPERATQVLNMIGPNELTPPPTEPAWKLFLKELLAPL 633
VMVRKGTVVKEESLRQELLDDPE+DPPEVGG RLDW+RD HSRQSSLRVLVPTAASVFKWDQGGALIEGIDEATIGLLDEHRLSIKTLGERYCTDLNSERPEHSGGVNPERA QVLNMIGPNELTPPPTEP WKLFLKELLAPL
Sbjct: 86 VMVRKGTVVKEESLRQELLDDPEVDPPEVGGRRLDWQRDAVHSRQSSLRVLVPTAASVFKWDQGGALIEGIDEATIGLLDEHRLSIKTLGERYCTDLNSERPEHSGGVNPERAMQVLNMIGPNELTPPPTEPGWKLFLKELLAPL 230
BLAST of mRNA_Ecto-sp13_S_contig1475.3630.1 vs. uniprot
Match: A0A7I8VI36_9ANNE (Sodium/potassium-transporting ATPase subunit alpha n=2 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VI36_9ANNE) HSP 1 Score: 58.2 bits (139), Expect = 2.380e-6 Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 1
Query: 433 LDEHRLSIKTLGERYCTDLNSERPEHSGGVNPERATQVLNMIGPNELTPPPTEPAWKLFLKEL 621
+DEH++ I+ L ERY T+ + G+ PE+A Q+L GPNELTPP T P W F K+L
Sbjct: 58 MDEHQVPIEELFERYQTNPKT-------GLTPEKARQILERDGPNELTPPKTTPEWVKFCKQL 113
BLAST of mRNA_Ecto-sp13_S_contig1475.3630.1 vs. uniprot
Match: A0A1B3PEF8_EURCO (Sodium/potassium-transporting ATPase subunit alpha n=1 Tax=Eurythoe complanata TaxID=167815 RepID=A0A1B3PEF8_EURCO) HSP 1 Score: 57.8 bits (138), Expect = 3.190e-6 Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 1
Query: 433 LDEHRLSIKTLGERYCTDLNSERPEHSGGVNPERATQVLNMIGPNELTPPPTEPAWKLFLKEL 621
+DEHR++++ L R TD N G++PERA Q+L GPNEL+PP T P W F K+L
Sbjct: 1 MDEHRITLEDLCTRLGTDPNV-------GLSPERARQILERDGPNELSPPKTTPEWVKFCKQL 56
BLAST of mRNA_Ecto-sp13_S_contig1475.3630.1 vs. uniprot
Match: A0A4W4F667_ELEEL (Sodium/potassium-transporting ATPase subunit alpha n=3 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4F667_ELEEL) HSP 1 Score: 57.0 bits (136), Expect = 5.840e-6 Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 1
Query: 433 LDEHRLSIKTLGERYCTDLNSERPEHSGGVNPERATQVLNMIGPNELTPPPTEPAWKLFLKEL 621
LD+H+L++ L ++Y TDLN G++ A ++L GPN LTPPPT P W F K+L
Sbjct: 33 LDDHKLTLDELQQKYSTDLNR-------GLSSSHAKEILARDGPNALTPPPTTPEWVKFCKQL 88
BLAST of mRNA_Ecto-sp13_S_contig1475.3630.1 vs. uniprot
Match: A0A401NUX9_SCYTO (Sodium/potassium-transporting ATPase subunit alpha n=6 Tax=Galeoidea TaxID=119195 RepID=A0A401NUX9_SCYTO) HSP 1 Score: 56.6 bits (135), Expect = 7.910e-6 Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 1
Query: 433 LDEHRLSIKTLGERYCTDLNSERPEHSGGVNPERATQVLNMIGPNELTPPPTEPAWKLFLKEL 621
LD+H++++ L +RY TDLN G+ RA +VL GPN LTPPPT P W F ++L
Sbjct: 75 LDDHKITLDELQQRYGTDLNR-------GLTNTRAKEVLARDGPNALTPPPTTPEWVKFCRQL 130
BLAST of mRNA_Ecto-sp13_S_contig1475.3630.1 vs. uniprot
Match: H9GUW4_ANOCA (Sodium/potassium-transporting ATPase subunit alpha n=2 Tax=Anolis carolinensis TaxID=28377 RepID=H9GUW4_ANOCA) HSP 1 Score: 55.8 bits (133), Expect = 1.430e-5 Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 1
Query: 433 LDEHRLSIKTLGERYCTDLNSERPEHSGGVNPERATQVLNMIGPNELTPPPTEPAWKLFLKEL 621
+D+H+LS++ L ++Y TDL++ G+ +A ++L GPN LTPPPT P W F ++L
Sbjct: 28 IDDHKLSLEELAQKYKTDLST-------GLTTTQAAEILARDGPNALTPPPTTPEWVKFCRQL 83
BLAST of mRNA_Ecto-sp13_S_contig1475.3630.1 vs. uniprot
Match: T1EIA9_HELRO (Cation_ATPase_N domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1EIA9_HELRO) HSP 1 Score: 50.1 bits (118), Expect = 9.280e-5 Identity = 24/63 (38.10%), Postives = 35/63 (55.56%), Query Frame = 1
Query: 433 LDEHRLSIKTLGERYCTDLNSERPEHSGGVNPERATQVLNMIGPNELTPPPTEPAWKLFLKEL 621
+DEH+L + L ++ TD G+ +RA ++L GPN+LTPP T P W F K+L
Sbjct: 10 MDEHKLPLNELVDKLGTDTEK-------GLTTQRAREILERDGPNQLTPPKTTPEWVKFCKQL 65 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1475.3630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1475.3630.1 >prot_Ecto-sp13_S_contig1475.3630.1 ID=prot_Ecto-sp13_S_contig1475.3630.1|Name=mRNA_Ecto-sp13_S_contig1475.3630.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=211bp CTNKRCRSFRVRVSAKHRSFWCATQCVFAVEGRPCTARTTRPCKNLKTQRback to top mRNA from alignment at Ecto-sp13_S_contig1475:3331..8181- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1475.3630.1 ID=mRNA_Ecto-sp13_S_contig1475.3630.1|Name=mRNA_Ecto-sp13_S_contig1475.3630.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4851bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1475:3331..8181- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1475:3331..8181- >mRNA_Ecto-sp13_S_contig1475.3630.1 ID=mRNA_Ecto-sp13_S_contig1475.3630.1|Name=mRNA_Ecto-sp13_S_contig1475.3630.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1475:3331..8181- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |