mRNA_Ecto-sp13_S_contig14736.3620.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14736.3620.1
Unique NamemRNA_Ecto-sp13_S_contig14736.3620.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14736.3620.1 vs. uniprot
Match: D8LKE1_ECTSI (Similar to retinitis pigmentosa GTPase regulator n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKE1_ECTSI)

HSP 1 Score: 303 bits (777), Expect = 3.760e-92
Identity = 171/317 (53.94%), Postives = 173/317 (54.57%), Query Frame = 2
Query:    2 GLQDAEKTVCIPQEVTFFCDKPLVQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMAVTVDGYCYAWGSADGGWTGLKRPPGLRVVDPGPSTDRFAWPYVCIATASTAVWQHVVGWLAIVVLFFGKPLSLTVMADGYSQLPEHVECRPRRSLGLPWNKVKLWDCFRQ*IARCFCAVALSLFSAGVFSVRHEREGREDKKLNQTEDQPNLFFHHGLTTPLPCPPSPITCLT*LDLRAVETQSFDSTHNVHVPALVYSLAPYKVLQVGCGGGHTLVVAKRRARPVSPGS 952
            GLQDAEKTVCIPQEVTFF DKPLVQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMA+TVDGYCYAWGSADGGWTGL RPPGLRVVDPGPS D                                                                                                                                             RAVETQSFDSTHNVHVPALVYSLAPYKVLQVGCGGGHTLVVAKRRARPVSPG+
Sbjct:  241 GLQDAEKTVCIPQEVTFFSDKPLVQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMAITVDGYCYAWGSADGGWTGLTRPPGLRVVDPGPSAD---------------------------------------------------------------------------------------------------------------------------------------------RAVETQSFDSTHNVHVPALVYSLAPYKVLQVGCGGGHTLVVAKRRARPVSPGT 416          
BLAST of mRNA_Ecto-sp13_S_contig14736.3620.1 vs. uniprot
Match: A0A835Z434_9STRA (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z434_9STRA)

HSP 1 Score: 123 bits (309), Expect = 3.960e-29
Identity = 62/123 (50.41%), Postives = 78/123 (63.41%), Query Frame = 2
Query:    2 GLQDAEKTVCIPQEVTFFCDKPL--VQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMAVTVDGYCYAWGSADGGWTGLKRPPG-LRVVDPGP 361
            G+ D  K    P EV     + +  V+ A G++H +A + +  V+SWGYG +GQ GHG   H+R PR V  L+  PV QV CG  WSMAVT  G+ YAWG ADGGWTGL+ PPG LR V+PGP
Sbjct:  148 GVADPPKVAPYPVEVGALRGQRVAEVRVACGEYHNLARTERGAVYSWGYGLDGQCGHGGAQHLRTPRIVERLKGNPVVQVACGSLWSMAVTSTGHLYAWGCADGGWTGLQCPPGVLRCVEPGP 270          
BLAST of mRNA_Ecto-sp13_S_contig14736.3620.1 vs. uniprot
Match: A0A7S2SV12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV12_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.810e-27
Identity = 53/107 (49.53%), Postives = 71/107 (66.36%), Query Frame = 2
Query:    2 GLQDAEKTVCI-PQEVTFFCDKPLVQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMAVTVDGYCYAWGSADGGWTG 319
            GL + +K +   PQ V+      +   A+GDFHM+AL+R R VF+WGYGAEGQ G G+ LH+R PR V +L+ V V+++ CG W S A++ DGY Y WG  DGGW G
Sbjct:    9 GLPNMKKKLFFRPQRVSTLDSFGVTSLASGDFHMLALTRDRRVFAWGYGAEGQCGQGNSLHLRTPRPVEALRHVLVSKISCGAWHSAALSADGYLYTWGYGDGGWLG 115          
BLAST of mRNA_Ecto-sp13_S_contig14736.3620.1 vs. uniprot
Match: A0A7S2G301_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G301_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.380e-23
Identity = 45/84 (53.57%), Postives = 57/84 (67.86%), Query Frame = 2
Query:   80 AAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMAVTVDGYCYAWGSADGGWTGLKRP 331
            AAGD HM+AL+R R VFSWGY AEGQ GHG+ LH R PR + +L+ V V ++ CG W+S  ++ +G  Y WG  DGGW G   P
Sbjct:   61 AAGDLHMLALTRDRRVFSWGYSAEGQCGHGTWLHGRTPRPIEALRHVLVTKIACGAWFSAVISAEGDLYTWGYGDGGWLGQGAP 144          
BLAST of mRNA_Ecto-sp13_S_contig14736.3620.1 vs. uniprot
Match: A0A7S3GVQ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVQ9_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 9.770e-18
Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 2
Query:    2 GLQDAEKTVCIPQEVTFFCDKPLVQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMAVT 268
            GL D +KT  IP EV  F   P+V  +AGDFHM+AL++  +V+SWGYG +GQ GH  +L++R PRR+     + +  V CG  +S+ +T
Sbjct:  128 GLNDVKKTQLIPAEVMAFSKNPVVTLSAGDFHMLALTQDGQVYSWGYGVDGQTGHCVMLNVRCPRRIDFFDTMHIRDVCCGAGYSLVLT 216          
BLAST of mRNA_Ecto-sp13_S_contig14736.3620.1 vs. uniprot
Match: D8SKI2_SELML (Uncharacterized protein n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SKI2_SELML)

HSP 1 Score: 76.3 bits (186), Expect = 8.060e-12
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 2
Query:   35 PQEVTFFCDKPLVQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMAVTVDGYCYAWGSADGGWTGLKRPPGLR 343
            P+ V    D  LVQ A G FH  AL++  +V +WGYG  GQ GHG+L + + P  V ++ +     + CGP W+ A+T +G  Y WG       G+   PGL+
Sbjct:  287 PKVVAALEDVTLVQVACGGFHAAALTQDGKVITWGYGGNGQLGHGTLENGKEPAIVEAMADKTCTYIACGPAWTAAITENGDLYTWGKNRDYQLGI---PGLK 386          
BLAST of mRNA_Ecto-sp13_S_contig14736.3620.1 vs. uniprot
Match: R1FI34_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FI34_EMIHU)

HSP 1 Score: 70.9 bits (172), Expect = 1.380e-11
Identity = 35/96 (36.46%), Postives = 53/96 (55.21%), Query Frame = 2
Query:   32 IPQEVTFFCDKPLVQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMAVTVDGYCYAWGSADGGWTG 319
            +P++V  F  + +V  +AGD H +A++    V+SWGYGA GQ GHG   +  +P++V +     V  V    + S A+  DG  YAWG  + G  G
Sbjct:    6 LPKKVETFAGRRVVAVSAGDRHSIAITADGAVWSWGYGASGQLGHGDQQNQLLPKQVEAFAGQRVVAVSAAEYNSFAIAADGGVYAWGLGERGCLG 101          
BLAST of mRNA_Ecto-sp13_S_contig14736.3620.1 vs. uniprot
Match: UPI00046BE5DE (probable E3 ubiquitin-protein ligase HERC6 n=1 Tax=Eptesicus fuscus TaxID=29078 RepID=UPI00046BE5DE)

HSP 1 Score: 75.5 bits (184), Expect = 2.320e-11
Identity = 37/108 (34.26%), Postives = 65/108 (60.19%), Query Frame = 2
Query:    2 GLQDAEKTVCIPQEVTFFCDKPLVQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRM-PRRVSSLQEVPVAQVVCGPWWSMAVTVDGYCYAWGSADGGWTGL 322
            G+++ ++ +  P+++       ++Q + GD+H +ALS+  +VFSWG  ++GQ G G     +  P+RV SL+ +P+AQV  G   S+A+++ G  Y WGS + G   L
Sbjct:  106 GIEELKEIIFTPKKIKTLNGIKIIQVSCGDYHSLALSKDGQVFSWGKNSQGQLGLGKEFPSQASPQRVRSLEGIPLAQVAAGGAHSLALSLSGTSYGWGSNNAGQLAL 213          
BLAST of mRNA_Ecto-sp13_S_contig14736.3620.1 vs. uniprot
Match: F1L879_ASCSU (RCC1 domain-containing protein 1 n=1 Tax=Ascaris suum TaxID=6253 RepID=F1L879_ASCSU)

HSP 1 Score: 73.9 bits (180), Expect = 2.780e-11
Identity = 30/80 (37.50%), Postives = 51/80 (63.75%), Query Frame = 2
Query:   56 CDKPLVQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMAVTVDGYCYAWG 295
            C +P++  A+G  H++ L+    V+S+G G+ G+ GHG+L   +MP+ +  L  +P+ ++ CG W S+A+T DG  Y WG
Sbjct:  191 CKEPIISMASGKCHVLLLNSSGLVYSFGTGSRGELGHGTLESEQMPKLIDVLSMIPIIEIACGAWHSVALTKDGDVYVWG 270          
BLAST of mRNA_Ecto-sp13_S_contig14736.3620.1 vs. uniprot
Match: A0A0M3IJG1_ASCLU (Uncharacterized protein n=1 Tax=Ascaris lumbricoides TaxID=6252 RepID=A0A0M3IJG1_ASCLU)

HSP 1 Score: 73.9 bits (180), Expect = 5.420e-11
Identity = 30/80 (37.50%), Postives = 51/80 (63.75%), Query Frame = 2
Query:   56 CDKPLVQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMAVTVDGYCYAWG 295
            C +P++  A+G  H++ L+    V+S+G G+ G+ GHG+L   +MP+ +  L  +P+ ++ CG W S+A+T DG  Y WG
Sbjct:  360 CKEPIISMASGKCHVLLLNSSGLVYSFGTGSRGELGHGTLESEQMPKLIDVLSVIPIIEIACGAWHSVALTKDGDVYVWG 439          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14736.3620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKE1_ECTSI3.760e-9253.94Similar to retinitis pigmentosa GTPase regulator n... [more]
A0A835Z434_9STRA3.960e-2950.41Regulator of chromosome condensation 1/beta-lactam... [more]
A0A7S2SV12_9STRA2.810e-2749.53Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2G301_9STRA1.380e-2353.57Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3GVQ9_9STRA9.770e-1844.94Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
D8SKI2_SELML8.060e-1237.86Uncharacterized protein n=4 Tax=Selaginella moelle... [more]
R1FI34_EMIHU1.380e-1136.46Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
UPI00046BE5DE2.320e-1134.26probable E3 ubiquitin-protein ligase HERC6 n=1 Tax... [more]
F1L879_ASCSU2.780e-1137.50RCC1 domain-containing protein 1 n=1 Tax=Ascaris s... [more]
A0A0M3IJG1_ASCLU5.420e-1137.50Uncharacterized protein n=1 Tax=Ascaris lumbricoid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14736contigEcto-sp13_S_contig14736:517..2213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size531
Hectar predicted targeting categoryother localisation
Exons4
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462786.4861703-UTR-Ecto-sp13_S_contig14736:516..6731681462786.4861703-UTR-Ecto-sp13_S_contig14736:516..673Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14736 517..673 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462786.5074883-CDS-Ecto-sp13_S_contig14736:1096..12361681462786.5074883-CDS-Ecto-sp13_S_contig14736:1096..1236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14736 1097..1236 -
1681462786.5158834-CDS-Ecto-sp13_S_contig14736:1700..18461681462786.5158834-CDS-Ecto-sp13_S_contig14736:1700..1846Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14736 1701..1846 -
1681462786.5241947-CDS-Ecto-sp13_S_contig14736:2127..22131681462786.5241947-CDS-Ecto-sp13_S_contig14736:2127..2213Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14736 2128..2213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14736.3620.1prot_Ecto-sp13_S_contig14736.3620.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14736 1097..2213 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14736.3620.1

>prot_Ecto-sp13_S_contig14736.3620.1 ID=prot_Ecto-sp13_S_contig14736.3620.1|Name=mRNA_Ecto-sp13_S_contig14736.3620.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
GFARRGEDCVHSAGGDLLLRQAPRSSSGRRLPHGGAVAEERGVLVGVRGG
GAGRTREPAAHAHAPSRELAARGAGGSGGVWALVEHGCHRRRVLLRLGKR
GRRVDGAEAATWSTRGRPRAFDR*
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mRNA from alignment at Ecto-sp13_S_contig14736:517..2213-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14736.3620.1 ID=mRNA_Ecto-sp13_S_contig14736.3620.1|Name=mRNA_Ecto-sp13_S_contig14736.3620.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1697bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14736:517..2213- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGTTTGCAAGACGCGGAGAAGACTGTGTGCATTCCGCAGGAGGTGACCT TCTTCTGCGACAAGCCCCTCGTTCAAGCAGCGGCAGGTGCGATGTAGACT GATTTCCTTTCGGCTTCGACCCCTCAAGCAACCGAGTAGCGTCGTGCCTG GCCGCTGCCTCATCCTACTACTCCCATTTGATGCTGACTTTGTTTTTGTC TTGTCGGCCGCTGCGCTCGCTTCTCGAGCTAAGCTTGCACCGCTATGCCG CCTTTTTTCTCAGGGGATACTTGTAGGGCCTTGGAGTGGGGTGGGAAGTG ATGCCTAGACTTGCTCAACCTTATTTTTTTGTTGTTGCAATTTTTCTACT TCGTTTTGCTTGGCTAGGCGACTTCCACATGGTGGCGCTGTCGCGGAAGA GAGAGGTGTTCTCGTGGGGGTACGGGGCGGAGGGGCAGGGCGGACACGGG AGCCTGCTGCACATGCGCATGCCCCGTCGCGTGAGCTCGCTGCAAGAGGT GCCGGTGGCTCAGGTGTGTGTATGTTTGTGTGTGTGTGGGTTTCTCCCAG TAGCGTCGTCCGCGCTAACTGGCTGGCCAATGAAAATACGCCAGTCAGTC TTTGTAGCGGCAAAACAAACGCGAACACTTTTCTACAAATCGAAAAGGGT AAGGATAACGGTTCTCTTCCGACAGAGGGGGCGCAGGGTTGCCGCTTGTA TGCGTGTGTCTTTCTTGCATTCGTATCGACCGCGCGTGCTGTGGAATTTG GCTGACAAATGATACAGACGATGTTATACTGTTGTGGGACGAAGAGACGC AAACAACATGATTTTCTAGCGGTCGTGGGTCTGCTTGGCATTATTGTGCA ACAAACTGCAGGCCCCCTTCCCCCCCCCCCGTCCGCACACGCCTCTTCTG TTTCCATCGATGTCCTGTCGACGATGTTACAAGTAATGACTATCGTGCAT GCCTACCTGACTTGACTTGGTGTACAGGTGGTGTGTGGGCCTTGGTGGAG CATGGCTGTCACCGTAGACGGGTATTGCTACGCCTGGGGAAGCGCGGACG GCGGGTGGACGGGGCTGAAGCGGCCACCTGGTCTACGCGTGGTCGACCCA GGGCCTTCGACCGATAGGTTTGCATGGCCCTATGTATGTATAGCGACAGC CAGCACAGCTGTTTGGCAGCATGTAGTGGGATGGCTTGCGATCGTTGTTT TGTTTTTTGGCAAACCGCTTTCTTTAACGGTCATGGCTGATGGATACAGC CAGCTGCCCGAACACGTTGAATGTCGCCCCAGGCGAAGTTTGGGCCTCCC TTGGAACAAGGTCAAGCTTTGGGATTGTTTCCGCCAATGAATTGCGCGCT GTTTCTGTGCGGTGGCTTTGTCTCTGTTCTCAGCAGGGGTTTTCTCGGTG CGCCATGAGAGGGAGGGGAGGGAGGACAAGAAACTAAACCAGACCGAGGA CCAACCAAACCTCTTTTTTCATCACGGTCTCACCACTCCGCTTCCGTGCC CGCCCTCCCCCATCACATGCTTGACTTGACTTGACCTCAGAGCCGTGGAG ACGCAGTCTTTCGACTCGACGCACAACGTGCACGTCCCCGCGCTGGTGTA CTCCCTGGCGCCGTACAAGGTTCTCCAGGTTGGGTGCGGAGGCGGTCATA CCCTGGTGGTGGCTAAGCGCCGGGCTCGCCCCGTATCGCCAGGTTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14736:517..2213-

>mRNA_Ecto-sp13_S_contig14736.3620.1 ID=mRNA_Ecto-sp13_S_contig14736.3620.1|Name=mRNA_Ecto-sp13_S_contig14736.3620.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14736:517..2213- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGTTTGCAAGACGCGGAGAAGACTGTGTGCATTCCGCAGGAGGTGACCT
TCTTCTGCGACAAGCCCCTCGTTCAAGCAGCGGCAGGCGACTTCCACATG
GTGGCGCTGTCGCGGAAGAGAGAGGTGTTCTCGTGGGGGTACGGGGCGGA
GGGGCAGGGCGGACACGGGAGCCTGCTGCACATGCGCATGCCCCGTCGCG
TGAGCTCGCTGCAAGAGGTGCCGGTGGCTCAGGTGGTGTGTGGGCCTTGG
TGGAGCATGGCTGTCACCGTAGACGGGTATTGCTACGCCTGGGGAAGCGC
GGACGGCGGGTGGACGGGGCTGAAGCGGCCACCTGGTCTACGCGTGGTCG
ACCCAGGGCCTTCGACCGATAG
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