mRNA_Ecto-sp13_S_contig14724.3613.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14724.3613.1
Unique NamemRNA_Ecto-sp13_S_contig14724.3613.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14724.3613.1 vs. uniprot
Match: D7FRR5_ECTSI (COP9 signalosome complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR5_ECTSI)

HSP 1 Score: 398 bits (1023), Expect = 6.530e-138
Identity = 197/200 (98.50%), Postives = 198/200 (99.00%), Query Frame = 1 
Query:    1 IRQVSQMYETTLSALKEEGNERMWFNTYVKLAKVYLQIPDYVKVQTTIDTLHDSCRLANGQDDPSKGNQLLEVYGITIQLCTATNNNILMKEVYPKTIDLNASVEDPRIMGVIREQGGKMYMSMGNWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSHINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLA 600
            +R VSQMYETTLSALKEEGNERMWFNTYVKLAKVYLQIPDYVKVQTTIDTLHDSCRLANGQDDPSKGNQLLEVYGITIQLCTATNNNILMKEVYPKTIDLNASVEDPRIMGVIREQGGKMYMSMGNWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLS INPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLA
Sbjct:   37 LRMVSQMYETTLSALKEEGNERMWFNTYVKLAKVYLQIPDYVKVQTTIDTLHDSCRLANGQDDPSKGNQLLEVYGITIQLCTATNNNILMKEVYPKTIDLNASVEDPRIMGVIREQGGKMYMSMGNWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSRINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLA 236
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BLAST of mRNA_Ecto-sp13_S_contig14724.3613.1 vs. uniprot
Match: A0A6H5JKQ1_9PHAE (COP9 signalosome complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ1_9PHAE)

HSP 1 Score: 398 bits (1023), Expect = 1.440e-136
Identity = 197/200 (98.50%), Postives = 198/200 (99.00%), Query Frame = 1 
Query:    1 IRQVSQMYETTLSALKEEGNERMWFNTYVKLAKVYLQIPDYVKVQTTIDTLHDSCRLANGQDDPSKGNQLLEVYGITIQLCTATNNNILMKEVYPKTIDLNASVEDPRIMGVIREQGGKMYMSMGNWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSHINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLA 600
            +R VSQMYETTLSALKEEGNERMWFNTYVKLAKVYLQIPDYVKVQTTIDTLHDSCRLANGQDDPSKGNQLLEVYGITIQLCTATNNNILMKEVYPKTIDLNASVEDPRIMGVIREQGGKMYMSMGNWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLS INPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLA
Sbjct:  129 LRMVSQMYETTLSALKEEGNERMWFNTYVKLAKVYLQIPDYVKVQTTIDTLHDSCRLANGQDDPSKGNQLLEVYGITIQLCTATNNNILMKEVYPKTIDLNASVEDPRIMGVIREQGGKMYMSMGNWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSRINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLA 328
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BLAST of mRNA_Ecto-sp13_S_contig14724.3613.1 vs. uniprot
Match: A0A6V1ITC2_HETAK (COP9 signalosome complex subunit 2 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1ITC2_HETAK)

HSP 1 Score: 268 bits (684), Expect = 2.720e-85
Identity = 131/197 (66.50%), Postives = 156/197 (79.19%), Query Frame = 1 
Query:   10 VSQMYETTLSALKEEGNERMWFNTYVKLAKVYLQIPDYVKVQTTIDTLHDSCRLANGQDDPSKGNQLLEVYGITIQLCTATNNNILMKEVYPKTIDLNASVEDPRIMGVIREQGGKMYMSMGNWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSHINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLA 600
            +++MYE TL+ALK   NERMWF T  KL +V+LQ  DY  VQ  ID  H SC L +G DDP+KG  LLEVY + IQLCTAT N   M+EVYPKT++LNA+V DPRIMGVIRE+GGKM+M+ G W +AYNEFYEGFR++QEAGN  A+ CLKYVVLANML LS INPFAAREAKV+QE++EI AMM LR AY+ N+LA
Sbjct:  131 LTKMYELTLAALKRAANERMWFGTLCKLGRVHLQQEDYSGVQRVIDEAHRSCLLPDGSDDPAKGTSLLEVYALEIQLCTATRNAARMREVYPKTLNLNAAVADPRIMGVIREEGGKMHMAAGRWAEAYNEFYEGFRSHQEAGNARARDCLKYVVLANMLALSDINPFAAREAKVYQEDREITAMMALRQAYDANELA 327
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BLAST of mRNA_Ecto-sp13_S_contig14724.3613.1 vs. uniprot
Match: A0A7S2BKS2_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BKS2_9STRA)

HSP 1 Score: 265 bits (676), Expect = 8.430e-84
Identity = 129/196 (65.82%), Postives = 153/196 (78.06%), Query Frame = 1 
Query:   10 VSQMYETTLSALKEEGNERMWFNTYVKLAKVYLQIPDYVKVQTTIDTLHDSCRLANGQDDPSKGNQLLEVYGITIQLCTATNNNILMKEVYPKTIDLNASVEDPRIMGVIREQGGKMYMSMGNWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSHINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDL 597
            +S+MY+ TL+ALK   NER+WFNTYVK  K YLQ  DY +V   +  LH SC+L +G DDP+KG  LLEVY + IQLCTAT ++  MK++YPKT++LNA+V DPRIMGVIRE+GGKMYMS   W  AYNEFYEGFR +QEAGNP AK  LKYVVLANML LS INPF+AREA  +QE+ EIVAM +LR AYE NDL
Sbjct:  156 LSKMYDITLTALKTANNERLWFNTYVKYGKAYLQSKDYNQVNRIVQELHRSCQLPDGTDDPTKGTYLLEVYALEIQLCTATKSSSRMKQIYPKTLNLNAAVADPRIMGVIREEGGKMYMSESRWDDAYNEFYEGFRGFQEAGNPRAKDALKYVVLANMLALSEINPFSAREAIAYQEDPEIVAMRNLRSAYEANDL 351
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BLAST of mRNA_Ecto-sp13_S_contig14724.3613.1 vs. uniprot
Match: A0A7R9YB37_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YB37_9STRA)

HSP 1 Score: 255 bits (652), Expect = 1.590e-80
Identity = 121/193 (62.69%), Postives = 150/193 (77.72%), Query Frame = 1 
Query:   19 MYETTLSALKEEGNERMWFNTYVKLAKVYLQIPDYVKVQTTIDTLHDSCRLANGQDDPSKGNQLLEVYGITIQLCTATNNNILMKEVYPKTIDLNASVEDPRIMGVIREQGGKMYMSMGNWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSHINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDL 597
            +YE TL ALK   NER+W NT +KL +V+L+  +Y +V      L ++CRL +G DD  KG+ LLE Y + IQLCT T+N   MKE+YPKT  LNA+V DPRIMG+IRE+GGKM+M +G+W +AYNEFY  FRNYQE GNP AK CLKYVVL+NML LS INPFAAREAKVFQ+++EI+AMMDLRMAYE +D+
Sbjct:  130 VYEITLQALKNANNERLWLNTNIKLGRVHLEAKNYSRVAEIARELQEACRLPDGTDDLPKGSYLLEAYALEIQLCTQTHNTSRMKEIYPKTEALNAAVADPRIMGIIREEGGKMFMGLGSWSEAYNEFYAAFRNYQEGGNPRAKTCLKYVVLSNMLALSDINPFAAREAKVFQDDREIMAMMDLRMAYESSDM 322
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BLAST of mRNA_Ecto-sp13_S_contig14724.3613.1 vs. uniprot
Match: A0A7S2W4K8_9STRA (COP9 signalosome complex subunit 2 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4K8_9STRA)

HSP 1 Score: 254 bits (649), Expect = 1.710e-79
Identity = 128/197 (64.97%), Postives = 149/197 (75.63%), Query Frame = 1 
Query:   10 VSQMYETTLSALKEE-GNERMWFNTYVKLAKVYLQIPDYVKVQTTIDTLHDSCRLANGQDDPSKGNQLLEVYGITIQLCTATNNNILMKEVYPKTIDLNASVEDPRIMGVIREQGGKMYMSMGNWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSHINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDL 597
            +S++YE  L+ LK+   NER+WFNT V+  K  L   D  +V+  +  LH SCRL +G DDP+KG  LLEVY + IQLCTAT +   MK +YPKT++LNA+V DPRIMGVIRE+GGKMYM+ G W +AYNEFYEGFR YQEAGNP AK  LKYVVLANML LS INPFAAREA  FQEEKEIVAM  LR AYE NDL
Sbjct:  177 LSKIYEIALTTLKQSVNNERLWFNTCVRYGKACLAAGDVAQVRKAVADLHASCRLPDGSDDPAKGTYLLEVYALEIQLCTATKDTARMKALYPKTLNLNAAVADPRIMGVIREEGGKMYMAEGRWNEAYNEFYEGFRGYQEAGNPRAKDALKYVVLANMLALSDINPFAAREAIAFQEEKEIVAMRSLRTAYEANDL 373
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BLAST of mRNA_Ecto-sp13_S_contig14724.3613.1 vs. uniprot
Match: A0A7S1XNF2_9STRA (COP9 signalosome complex subunit 2 n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNF2_9STRA)

HSP 1 Score: 253 bits (645), Expect = 2.230e-79
Identity = 120/196 (61.22%), Postives = 150/196 (76.53%), Query Frame = 1 
Query:   10 VSQMYETTLSALKEEGNERMWFNTYVKLAKVYLQIPDYVKVQTTIDTLHDSCRLANGQDDPSKGNQLLEVYGITIQLCTATNNNILMKEVYPKTIDLNASVEDPRIMGVIREQGGKMYMSMGNWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSHINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDL 597
            + ++YE TL ALK   NER+W NT +KL +V+L+  +Y +V      L  +CRL +G DD +KG+ LLE Y + IQLCT T+N   +KE+YPKT  L+A+V DPRIMG+IRE+GGKM+M +  WG+AYNEFY  FRNYQE GNP AK CLKYVVL+NML LS INPFAAREAKVFQ+++EI AMMDLRMAYE ND+
Sbjct:  134 LQKIYEVTLQALKSANNERLWLNTNIKLGRVHLEAKNYGRVADIARELQVACRLPDGSDDVTKGSYLLEAYALEIQLCTLTHNTPRIKEIYPKTEALSAAVADPRIMGIIREEGGKMFMGLSQWGEAYNEFYAAFRNYQEGGNPRAKTCLKYVVLSNMLALSDINPFAAREAKVFQDDREITAMMDLRMAYESNDM 329
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BLAST of mRNA_Ecto-sp13_S_contig14724.3613.1 vs. uniprot
Match: A0A7S3M6V7_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M6V7_9STRA)

HSP 1 Score: 245 bits (625), Expect = 2.560e-77
Identity = 121/197 (61.42%), Postives = 149/197 (75.63%), Query Frame = 1 
Query:   10 VSQMYETTLSALKEEGNERMWFNTYVKLAKVYLQIPDYVKVQTTIDTLHDSCRLANGQDDPSKGNQLLEVYGITIQLCTATNNNILMKEVYPKTIDLNASVEDPRIMGVIREQGGKMYMSMGNWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSHINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLA 600
            +S+MYE TL ALK   NER+WFNT +KLAKVYL+     +V   I  L ++C+   G DD SKG  LLE+Y + IQLC  ++N++ MK++YPKT++LNA+V DPRIMG+IRE+GGKM MS GNW  AYNE YE FRNYQEAGN  A+  LKYVV+A+ML +S INPFAAREAKVF ++KEIVAM DLR   E NDLA
Sbjct:   38 LSEMYEITLLALKASNNERLWFNTNLKLAKVYLEEGKLQEVDRLISALKETCKTPEGNDDLSKGTLLLEIYCLEIQLCAVSHNSLRMKQIYPKTMNLNAAVADPRIMGIIREEGGKMQMSEGNWEDAYNELYESFRNYQEAGNARARDILKYVVVASMLTVSDINPFAAREAKVFSDDKEIVAMSDLRQCLEANDLA 234
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BLAST of mRNA_Ecto-sp13_S_contig14724.3613.1 vs. uniprot
Match: A0A1V9Z146_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z146_9STRA)

HSP 1 Score: 241 bits (614), Expect = 1.270e-74
Identity = 116/196 (59.18%), Postives = 148/196 (75.51%), Query Frame = 1 
Query:   10 VSQMYETTLSALKEEGNERMWFNTYVKLAKVYLQIPDYVKVQTTIDTLHDSCRLANGQDDPSKGNQLLEVYGITIQLCTATNNNILMKEVYPKTIDLNASVEDPRIMGVIREQGGKMYMSMGNWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSHINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDL 597
            +S+MY  TL AL+   N+R+WF T +KL K+YL++ +Y  +   ++ L  SC+LA+G DD SK   LL+VY + IQLCTATN+   MK +YPKT+ L+A++ DPRIMGVIRE+GGKMYMS G W +AYNEF+E FRNYQEAGN  AK CLKYVVLANML  S INPF +REAKVF++  EI AM+ LR AY+ ND+
Sbjct:  138 ISKMYTITLQALRTANNDRLWFQTNIKLGKLYLELGEYANLHRVLEQLQASCKLADGSDDTSKATSLLDVYCLEIQLCTATNDTAKMKVLYPKTLGLDAAISDPRIMGVIREEGGKMYMSEGLWSEAYNEFFESFRNYQEAGNARAKQCLKYVVLANMLASSDINPFDSREAKVFKDVDEINAMLLLRAAYDTNDI 333
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BLAST of mRNA_Ecto-sp13_S_contig14724.3613.1 vs. uniprot
Match: A0A1W0ACK2_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ACK2_9STRA)

HSP 1 Score: 241 bits (614), Expect = 1.410e-74
Identity = 115/196 (58.67%), Postives = 146/196 (74.49%), Query Frame = 1 
Query:   10 VSQMYETTLSALKEEGNERMWFNTYVKLAKVYLQIPDYVKVQTTIDTLHDSCRLANGQDDPSKGNQLLEVYGITIQLCTATNNNILMKEVYPKTIDLNASVEDPRIMGVIREQGGKMYMSMGNWGQAYNEFYEGFRNYQEAGNPNAKVCLKYVVLANMLDLSHINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDL 597
            +S MYE TL ALK   N+R+WF T +KL K+YL++ DY  +   ++ LH SC+L +G DD +K   LL+VY + IQLCTATNN   MK +YPKT+ L+A++ DPRIMGVIRE+GGK+Y+S G W  AYNEF+E FRNYQE GN  AK CLKYVVLANML  S INPF +REAKVF++ +EI AM+ LR AY+  D+
Sbjct:  137 ISTMYEITLEALKNANNDRLWFQTNIKLGKLYLELGDYAPLHKVLEELHASCKLPDGTDDMTKATSLLDVYCLEIQLCTATNNAAKMKTIYPKTLVLDAAISDPRIMGVIREEGGKLYLSEGQWNLAYNEFFESFRNYQEVGNARAKQCLKYVVLANMLASSDINPFDSREAKVFKDVEEINAMLLLRAAYDAKDI 332
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14724.3613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRR5_ECTSI6.530e-13898.50COP9 signalosome complex subunit 2 n=1 Tax=Ectocar... [more]
A0A6H5JKQ1_9PHAE1.440e-13698.50COP9 signalosome complex subunit 2 n=1 Tax=Ectocar... [more]
A0A6V1ITC2_HETAK2.720e-8566.50COP9 signalosome complex subunit 2 n=1 Tax=Heteros... [more]
A0A7S2BKS2_9STRA8.430e-8465.82COP9 signalosome complex subunit 2 n=1 Tax=Dictyoc... [more]
A0A7R9YB37_9STRA1.590e-8062.69COP9 signalosome complex subunit 2 n=1 Tax=Pinguio... [more]
A0A7S2W4K8_9STRA1.710e-7964.97COP9 signalosome complex subunit 2 n=2 Tax=Rhizoch... [more]
A0A7S1XNF2_9STRA2.230e-7961.22COP9 signalosome complex subunit 2 n=2 Tax=Phaeomo... [more]
A0A7S3M6V7_9STRA2.560e-7761.42COP9 signalosome complex subunit 2 n=1 Tax=Spumell... [more]
A0A1V9Z146_9STRA1.270e-7459.18COP9 signalosome complex subunit 2 n=1 Tax=Achlya ... [more]
A0A1W0ACK2_9STRA1.410e-7458.67COP9 signalosome complex subunit 2 n=1 Tax=Thraust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14724contigEcto-sp13_S_contig14724:2..3970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score392.9
Seed ortholog evalue8.7e-107
Seed eggNOG ortholog2880.D7FRR5
Preferred nameCOPS2
Model size600
KEGG koko:K12176
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000338,GO:0000715,GO:0000909,GO:0002009,GO:0003006,GO:0003674,GO:0003712,GO:0003714,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007282,GO:0007283,GO:0007292,GO:0007293,GO:0007399,GO:0007517,GO:0007519,GO:0008134,GO:0008150,GO:0008152,GO:0008180,GO:0008230,GO:0008231,GO:0008283,GO:0008356,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0014706,GO:0016043,GO:0016070,GO:0016333,GO:0016922,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0023052,GO:0030154,GO:0030163,GO:0030182,GO:0030582,GO:0030584,GO:0030718,GO:0030727,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031647,GO:0031935,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035257,GO:0035914,GO:0036099,GO:0036211,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043235,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044798,GO:0045892,GO:0045934,GO:0046483,GO:0046983,GO:0048134,GO:0048135,GO:0048138,GO:0048140,GO:0048142,GO:0048232,GO:0048468,GO:0048477,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048609,GO:0048646,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051427,GO:0051704,GO:0051716,GO:0060255,GO:0060429,GO:0060537,GO:0060538,GO:0060968,GO:0061061,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0070791,GO:0071704,GO:0071840,GO:0075259,GO:0080090,GO:0090052,GO:0090054,GO:0090304,GO:0090575,GO:0097659,GO:0098727,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1902275,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons6
EggNOG free text desc.protein deneddylation
EggNOG OGsCOG5159@1,KOG1464@2759
Cds size582
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14724.3613.1prot_Ecto-sp13_S_contig14724.3613.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14724 2..3952 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462785.7453704-CDS-Ecto-sp13_S_contig14724:1..711681462785.7453704-CDS-Ecto-sp13_S_contig14724:1..71Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14724 2..71 -
1681462785.762926-CDS-Ecto-sp13_S_contig14724:607..6871681462785.762926-CDS-Ecto-sp13_S_contig14724:607..687Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14724 608..687 -
1681462785.7812197-CDS-Ecto-sp13_S_contig14724:1391..14841681462785.7812197-CDS-Ecto-sp13_S_contig14724:1391..1484Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14724 1392..1484 -
1681462785.7988057-CDS-Ecto-sp13_S_contig14724:2103..21841681462785.7988057-CDS-Ecto-sp13_S_contig14724:2103..2184Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14724 2104..2184 -
1681462785.8139615-CDS-Ecto-sp13_S_contig14724:3361..35381681462785.8139615-CDS-Ecto-sp13_S_contig14724:3361..3538Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14724 3362..3538 -
1681462785.8251543-CDS-Ecto-sp13_S_contig14724:3871..39521681462785.8251543-CDS-Ecto-sp13_S_contig14724:3871..3952Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14724 3872..3952 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462785.8360596-UTR-Ecto-sp13_S_contig14724:3952..39701681462785.8360596-UTR-Ecto-sp13_S_contig14724:3952..3970Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14724 3953..3970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14724.3613.1

>prot_Ecto-sp13_S_contig14724.3613.1 ID=prot_Ecto-sp13_S_contig14724.3613.1|Name=mRNA_Ecto-sp13_S_contig14724.3613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=194bp
MYETTLSALKEEGNERMWFNTYVKLAKVYLQIPDYVKVQTTIDTLHDSCR
LANGQDDPSKGNQLLEVYGITIQLCTATNNNILMKEVYPKTIDLNASVED
PRIMGVIREQGGKMYMSMGNWGQAYNEFYEGFRNYQEAGNPNAKVCLKYV
VLANMLDLSHINPFAAREAKVFQEEKEIVAMMDLRMAYEGNDLA
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mRNA from alignment at Ecto-sp13_S_contig14724:2..3970-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14724.3613.1 ID=mRNA_Ecto-sp13_S_contig14724.3613.1|Name=mRNA_Ecto-sp13_S_contig14724.3613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3969bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14724:2..3970- (Ectocarpus species13 EcNAP12_S_4_19m)
ATACGACAGGTGTCCCAAATGTATGAGACGACCCTTTCGGCCTTGAAGGA
GGAGGGGAACGAGCGAATGTGGTTCAACACCTACGTCAAGCTTGCCAAGG
TAGGTACTGTGTGTTGGAAGAAAGTAGCAGACTACGGTGCTCCCCGCCGT
TAGTCACTTCAATGGTGCAGACGACTGTCGATGTCTCTACCTAGTCATGG
GGTGATGGCGTCGACCATCTGTCTTTCTCGAAGCTGCTGTTGTTTGTTTT
TGTAGATTTTCTCCGTTCAGCACGATACCTTTCGAATGAAGAAAAACCAT
CAAGCCAACCGGCAAAGGGGTGATGTACACACACACTACAATGCACGCCA
GCCGGAACGAGCGTTGTACTGTACGCTCGTCACTTTGAACGCGTTACTTT
TCTTTTTTTTTTTCCCTGAAAACCGCAAACAGGTGTACCTGCAAATCCCC
GACTACGTCAAGGTTCAGACGACCATCGACACTCTCCACGACTCGTGCCG
ATTGGCCAACGGACAGGACGATCCCTCCAAGGGCAACCAGCTGCTAGAGG
TGTACGGCATCACCATCCAGCTGTGCACCGCCACTAACAACAACATCCTC
ATGAAGGAGGTAAGATGCAGCACGTGCCGCCGATAACATGTCGGTATTGC
TCTAGCTCCCTTGGCGCCTTCGAGACGATGCGATTTTGTTTTTTGCGAAG
AGAAACAGGGCGGTGGTGTTATGCCGTGCGTGCCGACAGGAAAACCCCGG
TGTTGTGCCAGCAGCAGCGCACGCGGGAAGGGGAACGCACCCGTGGCTGT
GCCCCTCGTTGCTGCTCCGTATTGTATGGCTTGGTGCTTCGGGTGTTGCT
CGTATCCTCCTTGGTCTTGACCGATGTGATGTCGTTGAATCGTGGGGTGT
GCGGCTCCAGCGCCTCACCGCTCTGCTCGCTGTCACACCGCATCGTGTGG
TCTGAAGCATGACGTCCTCGCTTGAAGGGGGTGCCTGGGTTGCCTGGTTG
TGGTTTTGGCGAACGACACGTCCCAGGATTCTGCCTCTTGTGCCGTCCAT
CTATTTAGCTAACAGCGGTGCGCAGTGTTGCGCCACGGTAGAGCCCTAAA
CCGCACAGCTATTCAGTTTTTTTGTCGCCCGAACTTTCGTCCGCGAAATT
TCGCGACCGTCTCACGAAGGATAGGCCGACGGTGTGGTGATGATCGTGCT
CTCTCTCTCTCTCGTGTGTTTTTGTGGTGTGAACAATTTTCTCCTTGGCG
TCAACGTCCACGGTCAGGTCAATGCTCGAGAGAAGCAAAAGGTGTTTTGA
ACAGTCACAGCCTTTCTTGCCGGGCTTGGGTCTTCAACCGTTCTTCACTT
TGGCCATTGAACCATTTTTCGTACCCCACCCCCCTACCCTGTTCGATGGT
CTACAAGTAACAGCTAAGGCATCCAAAACATGAGTGCCCCGCTCCCCTTT
CCTTCTCTCCATATATCCATGTGTCCCTTGTCTGTTTTTCTCGGTGCCCC
TACCTCTGTCTTTTGCCCCAACTCTGTTGTTCGCCTCCGGCTCAGCACCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCACTATCTAAGTTGTCC
CAAAACAAAAAAACACACACACACACCCTCGCACACTCCATACAACAGCN
NNNNNNNNNCTGTGTCCCTTGTCTTGTTTTCTCGGGGCCCCTTCCTCTGT
TTTTTTCCACAACTCTGGTGTTCGCCCCCCGCCCAGCACCCCCCCCCCCC
CCCCCTCCCGGAATCGTCTCCCTTGAAACTTGTAAGGTGTACCCAAAGAC
GATCGACCTCAATGCCTCCGTGGAAGACCCTCGAATCATGGGCGTCATCA
GAGAGCAGGGGGGAAAGGTAAAGGTTTGACGAGACTCCTGAGTGAACTAT
TATGGTGCCACTTAGCTTACTTTCACACAGAACCTCGTCTTGCACGGCAG
TCTTGGAAGAAGTTGTTGAACGAGTTGTTTCGTATGCGCGGATTTGTGAT
TCCTTTATCTTTTACAAGTTTATACATGGATTTTGCCTTGTCCGAAGGCA
GCAGCGATTATTTTTGTGCAGAGGTGAATTTGATGGTTTAGTCGTTTCGC
AAGATCGTTCCCGCAGAGCAGACAACTCGGGAGCGTCTTCCGTTCATGTT
TGTCGTTTTCGTGTCTTGTTGCCTTGTACTGCGGTCGCTCCCCCTGACGG
CGTATCATCTTGGGGAATTTGGACAACTTGTTGAGCCTGCGGCAGTTTTT
CTGCAGTTTTTTTTGTTTCACCTCCTAGCTGCTTCCTACTCCGTATCGCC
CCTGTGCTTGTGAACTATGCTTTGCGACACCCGCTCGTGCGGTAATCCTG
CTGTGAACTATTTGTTGTTTTTTTGGAAGCGGCTTCCGCGCTGTGTTGTC
CTCTCCAGACACGGTCTCTAAGCAGGTTCTTAATAGTTTGACGGAGGTTA
ATTCCACGACGCGCGTACGTTTGCTTCTATCTGTAGATGTACATGTCGAT
GGGGAACTGGGGCCAGGCGTACAACGAGTTTTACGAGGGGTTCCGGAACT
ACCAGGAGGCAGGGAACCCTAACGCGAAGGTAAGGGCGGGGCGTTGATGA
CTGTTACGCATGATGCTGGTGGTGTAGCAGTGACGGTATTGCTGTGGTGG
AACTCCGTTGAAATATGCTGTCTTGAGCTCCGTTGATGTATGTTGGGTAG
TTATTGGTGTTCTACATGATGCTGGGGGTGTAGCTGTGACAGCGTTGCTG
TTGACACACACAGGGGGTTATGATGGTCACATAATGCCGGGGGTGTAGCT
GTCACAGTGTTGCCGTGATGGGACTCCGTTGATGTGTGTGTGTGGGTTAT
GATAACTACCGTTAGGATAACTACCGCTTTGGCCGCGGCGTAGCGGTAAC
CGTGTTACTGTGGTGGTGGTGGTGGAAAATCATGTTGCCGGTATTGGACC
TACGCAAGTCTTGGCCCCTCCGCTCTGCTTGTTGTTCGTACCCTCTTGGA
TTGGCCATCTACCAAGAATGATCTAGCTCCCTGAATCAGCTTTCTGAGAA
TGCCGTCAAGCGCGTGTTTGTTTAAACACTCAATATCAAGTTCAAGCTTA
TCTACCCTTAGCTATGTGTAAGACCCTTTGATGTTTGCAATATGATCCTG
CACAAGATACAGCAGGAGTATTGTAGTGTAGTATAGTAGCATCCCTAACC
TTCCATCACTAACCTGACGGCCGTGTTTCTGTTGTTTATTCGTCATCTGG
GTTTTGTTGCGAACGCGCGTGCGTGGGTGACAGGTTTGTCTCAAGTACGT
GGTTCTGGCGAACATGCTGGACCTTTCGCACATCAACCCTTTCGCGGCAA
GAGAGGCCAAAGTGTGAGTTTGGCAGCAAAGGACCATCATCATCGAAAAA
AGCTAGAGATGGTTTTTGGTGTGAATGAGTAAAATGGGATCACTGTGCAG
TGAAATGGTTGTGCGGGCACCATTGAATTGGTTGTGTGACCATCGAGTGG
TGCGTTGGCGTTATGTGCGAGTAGAACTCACCGAGACCATGACCCCTTCA
CAACCCCCACATGATTTATGGTTGGTTGCCCCGTACAAGGCCGGCGACAT
CCCCTGTCACTCTTGGTTCTTCTCGAGGAACCACGAATGCCCTTGCACAT
GCGATTAGTATTAAGTAGCGGTTGGAGGTGCATAGGTGGGGCGTCAATTA
ATTCGTGTGGGGTAGGCAGGGTGTCGACTTCCGTTCACACGAAACTTGGG
CGGAAGCGCATCGCCGCTCTCGCTTCCTGTTCCACAGATCTCGTACGCAA
CGACGCCCCCGGCTTTGTAGAGATGCAAGGTGAATGGTCAAATGACTGCA
GCACGGGCATGAATAACACCTCCCTCCCCCTCAACCGAACGTTACGCAGG
TTCCAGGAGGAGAAGGAGATCGTGGCGATGATGGACCTGCGCATGGCGTA
CGAGGGGAACGACCTGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14724:2..3970-

>mRNA_Ecto-sp13_S_contig14724.3613.1 ID=mRNA_Ecto-sp13_S_contig14724.3613.1|Name=mRNA_Ecto-sp13_S_contig14724.3613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14724:2..3970- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATGAGACGACCCTTTCGGCCTTGAAGGAGGAGGGGAACGAGCGAAT
GTGGTTCAACACCTACGTCAAGCTTGCCAAGGTGTACCTGCAAATCCCCG
ACTACGTCAAGGTTCAGACGACCATCGACACTCTCCACGACTCGTGCCGA
TTGGCCAACGGACAGGACGATCCCTCCAAGGGCAACCAGCTGCTAGAGGT
GTACGGCATCACCATCCAGCTGTGCACCGCCACTAACAACAACATCCTCA
TGAAGGAGGTGTACCCAAAGACGATCGACCTCAATGCCTCCGTGGAAGAC
CCTCGAATCATGGGCGTCATCAGAGAGCAGGGGGGAAAGATGTACATGTC
GATGGGGAACTGGGGCCAGGCGTACAACGAGTTTTACGAGGGGTTCCGGA
ACTACCAGGAGGCAGGGAACCCTAACGCGAAGGTTTGTCTCAAGTACGTG
GTTCTGGCGAACATGCTGGACCTTTCGCACATCAACCCTTTCGCGGCAAG
AGAGGCCAAAGTGTTCCAGGAGGAGAAGGAGATCGTGGCGATGATGGACC
TGCGCATGGCGTACGAGGGGAACGACCTGGCC
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