mRNA_Ecto-sp13_S_contig14723.3612.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14723.3612.1
Unique NamemRNA_Ecto-sp13_S_contig14723.3612.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14723.3612.1 vs. uniprot
Match: D7FRQ6_ECTSI (Putative methyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRQ6_ECTSI)

HSP 1 Score: 371 bits (952), Expect = 2.000e-126
Identity = 199/211 (94.31%), Postives = 204/211 (96.68%), Query Frame = 1
Query:    1 LWVLASRDNAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAINGAAQTTQGDGDSAADEGGVGDLESKRTSSGGKDGAGEVSGTDAAVASAAVSTTLSATEIDDSAEATGGDVSFCIGRALTGDESRAEVPATVAAAAASYAASAIAGPLTFVPAVPAATNFEAKYVAVGETVYELRLEPKLS 633
            LW+LASR+NAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAINGAAQTT+G+GDSAADEGG+GDLESKRTSSGGKDGAGEVSGTDAAVASAAVST LSATE DDSAE TGGDVSF IGRAL GDESRAEVPATVAAAA SYAASA AGPLTFVPAVPAATNFEAKYVAVGETVYELRLEPKLS
Sbjct:  181 LWILASRENAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAINGAAQTTEGEGDSAADEGGLGDLESKRTSSGGKDGAGEVSGTDAAVASAAVSTKLSATESDDSAETTGGDVSFGIGRALIGDESRAEVPATVAAAAVSYAASARAGPLTFVPAVPAATNFEAKYVAVGETVYELRLEPKLS 391          
BLAST of mRNA_Ecto-sp13_S_contig14723.3612.1 vs. uniprot
Match: A0A0P7Y7X8_9GAMM (Putative S-adenosylmethionine-dependent methyltransferase n=2 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A0P7Y7X8_9GAMM)

HSP 1 Score: 95.1 bits (235), Expect = 1.530e-20
Identity = 40/71 (56.34%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    4 WVLASRDNAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAING 216
            W LA     W  + HY+LYPNPYPK S L+ RWHGH VFP LL+LGG++ +RSNWR Y+DE   AV  + G
Sbjct:  113 WRLAH-GAGWTPERHYLLYPNPYPKASHLKMRWHGHPVFPTLLALGGLVEVRSNWRLYIDEFALAVAQVTG 182          
BLAST of mRNA_Ecto-sp13_S_contig14723.3612.1 vs. uniprot
Match: A0A5B8SSD4_9GAMM (Methyltransferase domain-containing protein n=1 Tax=Pistricoccus aurantiacus TaxID=1883414 RepID=A0A5B8SSD4_9GAMM)

HSP 1 Score: 95.1 bits (235), Expect = 1.740e-20
Identity = 42/77 (54.55%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    4 WVLASRDNAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAINGAAQTTQ 234
            W LA  D  W  + HY+LYPNPYPK S L+ RWHGH VFP LL+LGG + LRSNWR YL+E   A     G     Q
Sbjct:  113 WRLAL-DAGWRPRRHYLLYPNPYPKASHLKQRWHGHPVFPTLLALGGRLELRSNWRLYLEEFALAAARAGGGTAEVQ 188          
BLAST of mRNA_Ecto-sp13_S_contig14723.3612.1 vs. uniprot
Match: A0A4V2L0H3_9ALTE (SAM-dependent methlyltransferase n=1 Tax=Bowmanella sp. JS7-9 TaxID=1605368 RepID=A0A4V2L0H3_9ALTE)

HSP 1 Score: 94.4 bits (233), Expect = 3.010e-20
Identity = 38/69 (55.07%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    4 WVLASRDNAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAI 210
            W LA + N W+I +HY+LYPNPYPK+SQL+ RWHGH  F  L++LGG +T+RSNW+TY+ E   A+  +
Sbjct:  117 WRLAKQAN-WQISQHYLLYPNPYPKKSQLQKRWHGHPAFVDLVALGGHLTVRSNWQTYIQEFANALQCL 184          
BLAST of mRNA_Ecto-sp13_S_contig14723.3612.1 vs. uniprot
Match: UPI00100A59A6 (SAM-dependent methyltransferase n=2 Tax=Halomonadaceae TaxID=28256 RepID=UPI00100A59A6)

HSP 1 Score: 93.6 bits (231), Expect = 6.850e-20
Identity = 42/73 (57.53%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    4 WVLASRDNAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAINGAA 222
            W LA  +  W    HY+LYPNPYPK SQL+ RWHGHSVFP LL+LGG + LRSNWR Y++E   A      AA
Sbjct:  113 WRLALAE-GWRPSHHYLLYPNPYPKASQLKLRWHGHSVFPTLLALGGRLELRSNWRVYVEEFALATAEAGLAA 184          
BLAST of mRNA_Ecto-sp13_S_contig14723.3612.1 vs. uniprot
Match: A0A369KSM0_9GAMM (SAM-dependent methyltransferase n=1 Tax=Halomonas sp. DQ26W TaxID=2282311 RepID=A0A369KSM0_9GAMM)

HSP 1 Score: 93.2 bits (230), Expect = 1.110e-19
Identity = 38/72 (52.78%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    4 WVLASRDNAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAINGA 219
            W LA +   W+   HY+LYPNPYPK + L++RWHGH++FPV+L+LGG + LRSNWR Y++E   A+  + GA
Sbjct:  115 WRLALQA-GWQPVRHYLLYPNPYPKSAHLKTRWHGHAIFPVILALGGRLELRSNWRLYVEEFALALEQVTGA 185          
BLAST of mRNA_Ecto-sp13_S_contig14723.3612.1 vs. uniprot
Match: A0A1H0EKN1_9GAMM (tRNA G46 methylase TrmB n=1 Tax=Halomonas arcis TaxID=416873 RepID=A0A1H0EKN1_9GAMM)

HSP 1 Score: 92.8 bits (229), Expect = 1.160e-19
Identity = 40/71 (56.34%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    4 WVLASRDNAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAING 216
            W LA     W  + HY+LYPNPYPK S L+ RWHGH VFP LL+LGG+I LRSNW+ Y++E   AV  + G
Sbjct:  113 WRLAHLA-GWAPERHYLLYPNPYPKASHLKMRWHGHPVFPTLLALGGLIELRSNWQLYVEEFALAVAQVTG 182          
BLAST of mRNA_Ecto-sp13_S_contig14723.3612.1 vs. uniprot
Match: A0A3D9DW02_9GAMM (tRNA G46 methylase TrmB n=1 Tax=Kushneria indalinina DSM 14324 TaxID=1122140 RepID=A0A3D9DW02_9GAMM)

HSP 1 Score: 92.4 bits (228), Expect = 2.040e-19
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    4 WVLASRDNAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAING 216
            W LA     W+   H++LYPNPYPK SQL+ RWH H VFPV+++LGGV+TLRSNW+ Y+DE   A+    G
Sbjct:  117 WRLAY-SAGWQPVRHFLLYPNPYPKASQLKRRWHAHPVFPVVMALGGVLTLRSNWQVYVDEFACAINLATG 186          
BLAST of mRNA_Ecto-sp13_S_contig14723.3612.1 vs. uniprot
Match: A0A7S2FM74_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FM74_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.100e-19
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 1
Query:   10 LASRDNAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAINGAAQTTQG 237
            L +    W +K HYILYPNP PKR  L+SRWHGH  FP++L LGG I +RSNWRT+L E  +AV+  + A + + G
Sbjct:  105 LQALSAGWNLKAHYILYPNPNPKR--LKSRWHGHPAFPLILMLGGDIIVRSNWRTFLSEFSEAVVIAHEACEVSSG 178          
BLAST of mRNA_Ecto-sp13_S_contig14723.3612.1 vs. uniprot
Match: A0A4T0URY1_9NEIS (SAM-dependent methyltransferase n=1 Tax=Crenobacter intestini TaxID=2563443 RepID=A0A4T0URY1_9NEIS)

HSP 1 Score: 91.7 bits (226), Expect = 3.190e-19
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    1 LWVLASRDNAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAINGAA 222
            LW L + D    + +H++LYPNP+PK   L+ RWHGH VFP+LL LGGV+ LRSNW+ Y DE   A+ A+ GAA
Sbjct:  112 LWRLMAGDGV-RLAQHWMLYPNPWPKPQHLQRRWHGHPVFPLLLRLGGVLELRSNWQVYADEHAYALQALTGAA 184          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14723.3612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRQ6_ECTSI2.000e-12694.31Putative methyltransferase n=2 Tax=Ectocarpus TaxI... [more]
A0A0P7Y7X8_9GAMM1.530e-2056.34Putative S-adenosylmethionine-dependent methyltran... [more]
A0A5B8SSD4_9GAMM1.740e-2054.55Methyltransferase domain-containing protein n=1 Ta... [more]
A0A4V2L0H3_9ALTE3.010e-2055.07SAM-dependent methlyltransferase n=1 Tax=Bowmanell... [more]
UPI00100A59A66.850e-2057.53SAM-dependent methyltransferase n=2 Tax=Halomonada... [more]
A0A369KSM0_9GAMM1.110e-1952.78SAM-dependent methyltransferase n=1 Tax=Halomonas ... [more]
A0A1H0EKN1_9GAMM1.160e-1956.34tRNA G46 methylase TrmB n=1 Tax=Halomonas arcis Ta... [more]
A0A3D9DW02_9GAMM2.040e-1954.93tRNA G46 methylase TrmB n=1 Tax=Kushneria indalini... [more]
A0A7S2FM74_9STRA3.100e-1952.63Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A4T0URY1_9NEIS3.190e-1954.05SAM-dependent methyltransferase n=1 Tax=Crenobacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14723contigEcto-sp13_S_contig14723:3709..4344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score375.9
Seed ortholog evalue1.2e-101
Seed eggNOG ortholog2880.D7FRQ6
Model size636
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2DK0Q@1,2S61T@2759
Cds size636
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462785.7141902-CDS-Ecto-sp13_S_contig14723:3708..43441681462785.7141902-CDS-Ecto-sp13_S_contig14723:3708..4344Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14723 3709..4344 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14723.3612.1prot_Ecto-sp13_S_contig14723.3612.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14723 3709..4344 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14723.3612.1

>prot_Ecto-sp13_S_contig14723.3612.1 ID=prot_Ecto-sp13_S_contig14723.3612.1|Name=mRNA_Ecto-sp13_S_contig14723.3612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=212bp
LWVLASRDNAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVI
TLRSNWRTYLDEVCQAVLAINGAAQTTQGDGDSAADEGGVGDLESKRTSS
GGKDGAGEVSGTDAAVASAAVSTTLSATEIDDSAEATGGDVSFCIGRALT
GDESRAEVPATVAAAAASYAASAIAGPLTFVPAVPAATNFEAKYVAVGET
VYELRLEPKLS*
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mRNA from alignment at Ecto-sp13_S_contig14723:3709..4344-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14723.3612.1 ID=mRNA_Ecto-sp13_S_contig14723.3612.1|Name=mRNA_Ecto-sp13_S_contig14723.3612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=636bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14723:3709..4344- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTGGGTACTGGCATCGAGGGACAACGCTTGGGAAATCAAAGAACACTA CATCCTTTACCCCAATCCGTACCCGAAGCGCTCCCAGCTACGATCACGGT GGCACGGTCACTCTGTTTTCCCGGTCCTACTCAGCCTTGGTGGCGTGATA ACGCTACGCTCCAACTGGAGGACGTATCTGGACGAGGTCTGCCAGGCAGT GCTGGCAATCAATGGTGCAGCGCAGACGACGCAGGGCGACGGAGACTCGG CCGCCGATGAAGGCGGGGTTGGGGATCTGGAGTCTAAGAGGACGAGCAGC GGGGGCAAAGACGGTGCCGGAGAAGTATCTGGGACGGATGCAGCTGTCGC ATCAGCAGCTGTGTCCACGACATTATCGGCGACCGAAATCGACGACAGCG CGGAAGCAACCGGTGGGGACGTGAGTTTTTGCATCGGTCGAGCTTTGACT GGCGATGAAAGTAGAGCCGAAGTTCCGGCTACAGTCGCTGCCGCAGCCGC CTCTTACGCGGCTAGCGCAATAGCGGGCCCCTTGACCTTTGTCCCAGCAG TGCCTGCTGCCACAAACTTCGAGGCAAAGTATGTTGCCGTCGGTGAGACG GTGTACGAGCTTCGGCTAGAGCCAAAACTATCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14723:3709..4344-

>mRNA_Ecto-sp13_S_contig14723.3612.1 ID=mRNA_Ecto-sp13_S_contig14723.3612.1|Name=mRNA_Ecto-sp13_S_contig14723.3612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14723:3709..4344- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTGGGTACTGGCATCGAGGGACAACGCTTGGGAAATCAAAGAACACTA
CATCCTTTACCCCAATCCGTACCCGAAGCGCTCCCAGCTACGATCACGGT
GGCACGGTCACTCTGTTTTCCCGGTCCTACTCAGCCTTGGTGGCGTGATA
ACGCTACGCTCCAACTGGAGGACGTATCTGGACGAGGTCTGCCAGGCAGT
GCTGGCAATCAATGGTGCAGCGCAGACGACGCAGGGCGACGGAGACTCGG
CCGCCGATGAAGGCGGGGTTGGGGATCTGGAGTCTAAGAGGACGAGCAGC
GGGGGCAAAGACGGTGCCGGAGAAGTATCTGGGACGGATGCAGCTGTCGC
ATCAGCAGCTGTGTCCACGACATTATCGGCGACCGAAATCGACGACAGCG
CGGAAGCAACCGGTGGGGACGTGAGTTTTTGCATCGGTCGAGCTTTGACT
GGCGATGAAAGTAGAGCCGAAGTTCCGGCTACAGTCGCTGCCGCAGCCGC
CTCTTACGCGGCTAGCGCAATAGCGGGCCCCTTGACCTTTGTCCCAGCAG
TGCCTGCTGCCACAAACTTCGAGGCAAAGTATGTTGCCGTCGGTGAGACG
GTGTACGAGCTTCGGCTAGAGCCAAAACTATCGTAG
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