mRNA_Ecto-sp13_S_contig147.3591.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig147.3591.1
Unique NamemRNA_Ecto-sp13_S_contig147.3591.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig147.3591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig147contigEcto-sp13_S_contig147:27883..30838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size999
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-24_001690.1
Cds size999
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462784.36693-CDS-Ecto-sp13_S_contig147:27882..279621681462784.36693-CDS-Ecto-sp13_S_contig147:27882..27962Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig147 27883..27962 +
1681462784.382808-CDS-Ecto-sp13_S_contig147:29357..300921681462784.382808-CDS-Ecto-sp13_S_contig147:29357..30092Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig147 29358..30092 +
1681462784.394905-CDS-Ecto-sp13_S_contig147:30654..308381681462784.394905-CDS-Ecto-sp13_S_contig147:30654..30838Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig147 30655..30838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig147.3591.1prot_Ecto-sp13_S_contig147.3591.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig147 27883..30838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig147.3591.1

>prot_Ecto-sp13_S_contig147.3591.1 ID=prot_Ecto-sp13_S_contig147.3591.1|Name=mRNA_Ecto-sp13_S_contig147.3591.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=333bp
MSPRAEPGWDFLRTFESRCRTGSANRRKACEQAAAALDIDSTLCDELDEE
FPSTRPSPRYPPLGPRPPFYYLPPSKTLQNCSPEEVYDRPSHSQRCCNGN
TTGAIPIMVPHLTETELPSEASPRHLVTTIALQTPSKQEQPSINSNSYVS
ESIYGSLRGDTCGTRRDAAWRRPELSTVVVHSAAVTDDGRDVVDDGNIGG
LGGPISMPSGVEQVLAHRKRRRRTNFAVSSALVLSGSMEGNLVPSVPTPP
PPLGCGRGEDDPVPAEGDAIPSHTFFASSGCWDIAPGLRYSLDEEQNTVD
VEDLLEETTVVGVLQSRDEERVNQHVSDGQDGA
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mRNA from alignment at Ecto-sp13_S_contig147:27883..30838+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig147.3591.1 ID=mRNA_Ecto-sp13_S_contig147.3591.1|Name=mRNA_Ecto-sp13_S_contig147.3591.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2956bp|location=Sequence derived from alignment at Ecto-sp13_S_contig147:27883..30838+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCACCCCGTGCAGAACCAGGATGGGACTTCCTTAGAACGTTCGAATC
GAGATGCCGGACTGGGTCGGCCAACCGACGGTGAGAATCTCACGGTGATC
AGAATATCGTATGCAAGATGCGTGTTGTACAACTGCAGAGAGAGAGAACG
GAGTTAGTTAATGTACATCGACCCAGGAATGGGCTGCAGAGGAATACTGG
CTGTTGTCCGCCAAAAAGAAAGGTAAGACTGCCAGCTCTACGGTTGACTT
TTCAACACACAGAAATAATGCCCTCGTTTTCAGCGCGGCGTTCTGAATGG
CAACCGCCCCCATGTAAGCAAATCTCCGGCCACCGAGCCCATTTTAGTCA
CCCCCCGTGCCCGCCACGTTGACCGTCAGTTGCTGCCAGACAATCAGCAT
GGACGACTCAAGCAAATGATGCTCAATTGTTTTTTTGAACGGGAAATAGT
CTAGAGGGGTCACGTGCCTGCAAAAAACATACCTGTCTGTCCGCGTCTGC
CCACAAAACACACCACGATCGAAGTTGCGCCGCATGTAGCTACGACTTCG
GTCAGTATCATGTGATGGTTCCAGAGTCTCTGGGCTAGAATACCTGCAGC
AAATGAGACACATCAGTACTTCGCTACCTTTCATTGTCAACCACATGCAA
TGCTTGTGATGTGTGCACCACCAAATCCTCGAACAATGTTCTAGCAATAT
GAAGCTGTCGAAAATCTCCGAAATTTCGTGCGCCACCGACCTCAGTTTTC
AATCTGAACTCGAGGCAAGATATTTGTCAGTATATTCGCGAGTTGCATTT
CTCCAAAAACTGCATTACGTAGTATCATATGTTTCTTTTACCCACACATT
ATGTCGCAGCATCAAGGTTTTGGGCTTATTCTAATAACTCTTCAGCTGTT
CTCTCGTCTCCAGTTGTTGCGTCAGCCTATTGATGCTTCTGCCATTTGTT
CTGTCGGGCGTCTCTCGTAGCCTCTTGCTGAACCTGTTTGTAGTTCCTGT
TCATCAGCTCTTTGGTCTTCTCCTTGATCTTCCTCAGATTTCGTCACAGT
GTTCATCTTGTTCATCGATCGAAGAAAATAAACTCGGGTCTAGGCCAATA
TCCATTGATGATGACCCTGCTGATAGTGGGCGTGTACAGCACAACGGCAG
TCCTTCGCGCGCTACGTTTCCATTCAGTAGGTGGTTTGACTAATGCCTGT
TGTTTGATACTATAGAAGACGTTTTGGTGCGATGCACCAGCTTTAGCTGC
TGGTGCTAAGTGTACTCGTACAGTTTTTCTCTCAGTAATCCGGGCTACAG
CCCGATCGCGTCGAGAGATATTCTGACGCACTCCTTGAGCAATACATCTC
GACTCCACTCGATGATCAGGAGAGACTTTTTGGCAATGATTGGGTGTCGT
AATTCCTGTAGATTTCAGCGTGGATCCATCCACTGTAGGTCTGACGTTTC
TGCTTTGTCACACATGCTGACACAGGAAAGCTTGCGAGCAAGCGGCGGCG
GCCCTCGATATTGACTCGACACTGTGCGACGAGCTCGACGAGGAGTTTCC
AAGCACTCGCCCTTCGCCGCGGTACCCGCCGTTAGGGCCAAGGCCTCCGT
TCTACTACCTTCCACCGTCCAAAACCCTTCAAAACTGTTCCCCAGAGGAA
GTTTACGATCGACCTTCACACTCGCAACGCTGTTGTAACGGCAACACTAC
TGGAGCAATTCCAATCATGGTGCCCCATCTGACGGAGACCGAATTACCTT
CCGAAGCTTCTCCGAGACATTTGGTGACAACCATTGCGTTGCAAACCCCG
TCTAAACAAGAACAACCTTCGATAAACTCGAACAGCTACGTTTCGGAGTC
GATTTATGGAAGTTTGAGGGGCGATACTTGCGGTACTAGAAGAGATGCAG
CATGGCGAAGACCCGAACTGTCGACCGTCGTCGTTCACAGTGCTGCCGTA
ACGGATGATGGTCGTGATGTTGTCGATGACGGGAACATCGGTGGTCTCGG
TGGTCCAATATCCATGCCGTCTGGTGTGGAGCAAGTTCTTGCTCACAGGA
AACGGCGGCGGCGTACAAATTTCGCGGTTTCGTCAGCGCTGGTGCTGTCC
GGCTCAATGGAGGGCAACTTGGTGCCGTCAGTGCCCACGCCACCGCCACC
ACTTGGCTGTGGGCGTGGCGAGGACGACCCGGTGCCTGCTGAGGGCGATG
CGATCCCGAGGTCAGAGCTGAGGGAAGGGCCTGTGTTGTGCTGGCCATGA
TCGCTCTTTCGTTGGGTCATGTAGGCCGGTAGAAGCGAGCATGCTGCTTT
CCTCGCCGATACCAATCCGTACAAAGACTCCCCCTAACGACTGAGGTACG
CACAGTTTGTTTTGTGCACCCGACAATTGCTTTTTTGTGTCTGCAACGTT
CGTGTTACTCGGATTTGAAGAGGCCAGCGCTTGGATGGCAAATATAAACA
TGAAATAGTTGTTTTCCCCTCCGTTTAGTTGCTCTCTGCGGAACATGTAA
GCCCGCCGGAAGCTAGTAGCGAGGTGGAACGGAGTGTAGAACCCTTCCGC
CGAAATCGCCGAAGTTGTCATACATTCCCGAAAAGGTCCACGCAAACTGC
TTCGCTTCGGTGTGGTATGTGGTCGCGAATGCAAACGGGTTTCAAACCCG
CCAATCTTCGATCTTGTGTCTACTCTTATCAACACCTTTGGAACGTTTTC
TGTTATACACTTAGCGATACACCTCTTCAATAACCGCTGATCCCTCCCGT
CCATGTCATCATTTGGGCTCAGCCATACATTCTTCGCGAGCTCTGGATGC
TGGGATATTGCGCCTGGCCTGAGATATTCCCTAGACGAGGAGCAGAACAC
CGTCGACGTAGAGGATCTACTGGAAGAAACTACCGTTGTTGGCGTACTTC
AGTCACGAGACGAAGAACGGGTCAATCAACACGTGAGCGATGGACAGGAT
GGAGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig147:27883..30838+

>mRNA_Ecto-sp13_S_contig147.3591.1 ID=mRNA_Ecto-sp13_S_contig147.3591.1|Name=mRNA_Ecto-sp13_S_contig147.3591.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=999bp|location=Sequence derived from alignment at Ecto-sp13_S_contig147:27883..30838+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCACCCCGTGCAGAACCAGGATGGGACTTCCTTAGAACGTTCGAATC
GAGATGCCGGACTGGGTCGGCCAACCGACGGAAAGCTTGCGAGCAAGCGG
CGGCGGCCCTCGATATTGACTCGACACTGTGCGACGAGCTCGACGAGGAG
TTTCCAAGCACTCGCCCTTCGCCGCGGTACCCGCCGTTAGGGCCAAGGCC
TCCGTTCTACTACCTTCCACCGTCCAAAACCCTTCAAAACTGTTCCCCAG
AGGAAGTTTACGATCGACCTTCACACTCGCAACGCTGTTGTAACGGCAAC
ACTACTGGAGCAATTCCAATCATGGTGCCCCATCTGACGGAGACCGAATT
ACCTTCCGAAGCTTCTCCGAGACATTTGGTGACAACCATTGCGTTGCAAA
CCCCGTCTAAACAAGAACAACCTTCGATAAACTCGAACAGCTACGTTTCG
GAGTCGATTTATGGAAGTTTGAGGGGCGATACTTGCGGTACTAGAAGAGA
TGCAGCATGGCGAAGACCCGAACTGTCGACCGTCGTCGTTCACAGTGCTG
CCGTAACGGATGATGGTCGTGATGTTGTCGATGACGGGAACATCGGTGGT
CTCGGTGGTCCAATATCCATGCCGTCTGGTGTGGAGCAAGTTCTTGCTCA
CAGGAAACGGCGGCGGCGTACAAATTTCGCGGTTTCGTCAGCGCTGGTGC
TGTCCGGCTCAATGGAGGGCAACTTGGTGCCGTCAGTGCCCACGCCACCG
CCACCACTTGGCTGTGGGCGTGGCGAGGACGACCCGGTGCCTGCTGAGGG
CGATGCGATCCCGAGCCATACATTCTTCGCGAGCTCTGGATGCTGGGATA
TTGCGCCTGGCCTGAGATATTCCCTAGACGAGGAGCAGAACACCGTCGAC
GTAGAGGATCTACTGGAAGAAACTACCGTTGTTGGCGTACTTCAGTCACG
AGACGAAGAACGGGTCAATCAACACGTGAGCGATGGACAGGATGGAGCC
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