mRNA_Ecto-sp13_S_contig147.3589.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig147.3589.1
Unique NamemRNA_Ecto-sp13_S_contig147.3589.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig147.3589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig147contigEcto-sp13_S_contig147:8974..9695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size355
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_001670.1
Cds size114
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462784.0344176-CDS-Ecto-sp13_S_contig147:8973..90531681462784.0344176-CDS-Ecto-sp13_S_contig147:8973..9053Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig147 8974..9053 -
1681462784.043593-CDS-Ecto-sp13_S_contig147:9420..94541681462784.043593-CDS-Ecto-sp13_S_contig147:9420..9454Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig147 9421..9454 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462784.052691-UTR-Ecto-sp13_S_contig147:9454..96951681462784.052691-UTR-Ecto-sp13_S_contig147:9454..9695Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig147 9455..9695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig147.3589.1prot_Ecto-sp13_S_contig147.3589.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig147 8974..9454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig147.3589.1

>prot_Ecto-sp13_S_contig147.3589.1 ID=prot_Ecto-sp13_S_contig147.3589.1|Name=mRNA_Ecto-sp13_S_contig147.3589.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
MGLTTSSEAIGRHMNQVSADATEGQADSHLPSSNVRKF
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mRNA from alignment at Ecto-sp13_S_contig147:8974..9695-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig147.3589.1 ID=mRNA_Ecto-sp13_S_contig147.3589.1|Name=mRNA_Ecto-sp13_S_contig147.3589.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=722bp|location=Sequence derived from alignment at Ecto-sp13_S_contig147:8974..9695- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCCCTGGAGCTAACGATCTGTCCTCTGTGCCTTCGAGTCACCACAGTT
CGGCGCTCAAGTGACATCCCCAAAACAAGTGCCACAGCCTTCTATCGAGC
TTCTCTGTCACCAATTGAAGGAGAGCGCACCAGAGATTTCAAGAAGGAAA
AGAGACGCAAACGTGACATACGCAGGACCTCCAAGAAAACACAACACAAC
AGCACAAGAGGTCACACCGGCTGTGACCTGCCGCGCTGAACATGGGGCTC
ACAACGTCGTCTGAGGCTATTGGGCGTAAGATCGTTGATGGCATGTAGTG
GTTTCAACTTTGTTGTACAGTTGTGTTTTCCCTCGACACACAAGATCTCG
ACAGATAGTCTAACAATTGTTTTGTGTACATTCGGCTCCGAGGGTGCGAT
ATGCCGGCTGTCGGCTGCAACTCGCTCATTTGAGTCTATATACTGTACTA
CATGATGCAGGATGACCAGGTGAGGATGACAGCCAACGTTGGACCACCCT
CCCCTCTAGTGTTGCCAATGCGCTGCTTATTTGTTCTGTTCAAGGATGCG
TTTTCGCTGTTTCACTCCTACTGCTGCACGGCGTGGCTATAGGGTCCATC
TCCTCGCCCCTCCGGTGTTCTTGTATTGTGTATGCACCTCAGGCCATATG
AACCAGGTTAGCGCAGACGCAACTGAGGGCCAAGCTGACTCTCACTTGCC
GTCATCGAATGTGAGAAAATTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig147:8974..9695-

>mRNA_Ecto-sp13_S_contig147.3589.1 ID=mRNA_Ecto-sp13_S_contig147.3589.1|Name=mRNA_Ecto-sp13_S_contig147.3589.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig147:8974..9695- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGCTCACAACGTCGTCTGAGGCTATTGGGCGCCATATGAACCAGGT
TAGCGCAGACGCAACTGAGGGCCAAGCTGACTCTCACTTGCCGTCATCGA
ATGTGAGAAAATTT
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