mRNA_Ecto-sp13_S_contig14692.3586.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14692.3586.1
Unique NamemRNA_Ecto-sp13_S_contig14692.3586.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14692.3586.1 vs. uniprot
Match: D7FST2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST2_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 1.180e-54
Identity = 320/423 (75.65%), Postives = 335/423 (79.20%), Query Frame = 1 
Query:    1 TRPSDESDVCLECSAVVTDASFLGCLTNVEAAFGSCEFTEQAACCLNEVSGIDCVSDLATFEFFECLYDLTEPCDVTLTCSGDTTDGGTTPAPAAVSGTDTPVAGGGRGAETLAPTPAG-DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAETMMPSTAAXXXXXXXXXXXXXXXAAPAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMPTTADGDRELDFTPAPSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPSPAAGXXXXXXXXXXPTASDETTAPTNAAGDVVSESVAPTALEDADDIDTTSGGRGLLSTSVGGVVTGLLAFCTAVVAVV 1266
            T+  DES +CL+C+AV+T  SF  CL+ ++A  GSCEFTEQAACCLNEVSGIDCVSDLATFEFFEC+YDL  PCDV+LTCSGDTT     PA                 A+TLAPTPA  DXXXXXXXXXXXXXX        XXXXXXXX   GAETM P   A XXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXAG+G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VMPT+ DGDR  D TPAPSSS     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    AAGXXXXXXX   PTASDET APTNAAG+V SESVAPTAL +ADD DTTSGGRGL STSVGGVVTGLLAFCTA VAVV
Sbjct:   40 TQACDESAICLQCTAVITGGSFSDCLSGIDATIGSCEFTEQAACCLNEVSGIDCVSDLATFEFFECVYDLAAPCDVSLTCSGDTT-----PAXXXXXXXXXXXXXXXXXADTLAPTPAAADXXXXXXXXXXXXXXPDDGRPAPXXXXXXXXAAGGAETMSP---AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPAADXXXXXXXXXXXXXXXXXXXXXXXXXAGSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVMPTSGDGDRASDITPAPSSSAGAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----AAGXXXXXXXST-PTASDETMAPTNAAGEVGSESVAPTALGNADDTDTTSGGRGLFSTSVGGVVTGLLAFCTAAVAVV 449
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14692.3586.1 vs. uniprot
Match: A0A6H5JRJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ7_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 1.130e-49
Identity = 233/422 (55.21%), Postives = 246/422 (58.29%), Query Frame = 1 
Query:    1 TRPSDESDVCLECSAVVTDASFLGCLTNVEAAFGSCEFTEQAACCLNEVSGIDCVSDLATFEFFECLYDLTEPCDVTLTCSGDTTDGGTTPAPAAVSGTDTPVAGGGRGAETLAPTPAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAETMMPSTAAXXXXXXXXXXXXXXXAAPAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMPTTADGDRELDFTPAPSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPSPAAGXXXXXXXXXXPTASDETTAPTNAAGDVVSESVAPTALEDADDIDTTSGGRGLLSTSVGGVVTGLLAFCTAVVAVV 1266
            T+  D SDVC EC AV+TD+SFL CL+ + AA  SCEFTEQAACCLNE+SG DC+SDL T E+F+CLYDL EPCDVTLTC   TT                          T AP P G     XXXXX                        GAETMMP+ +                AAPAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                               +MPTT DGDR LD TPAPSSS     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     AGXXXXXXXX   TASDETTAP NAAG+V S SVAPTAL DADDIDTTSGGRGL STSVGGVVTGLLAFCTAVVAVV
Sbjct:   38 TQACDSSDVCPECIAVLTDSSFLDCLSGINAALDSCEFTEQAACCLNEISGTDCLSDLPTLEYFDCLYDLAEPCDVTLTC---TTPXXXXXXXXXXXXXXXXXXXXRPSGPTAAPAPGGPGTSAXXXXX------------------------GAETMMPTVSGDGGMPGAPSDTTAPAAAPAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGT-------------------------------------------------------------MMPTTGDGDRALDITPAPSSSAGAAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---GAGXXXXXXXX---TASDETTAPPNAAGEVGSTSVAPTALGDADDIDTTSGGRGLFSTSVGGVVTGLLAFCTAVVAVV 365
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14692.3586.1 vs. uniprot
Match: D7FST4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST4_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.030e-36
Identity = 80/112 (71.43%), Postives = 87/112 (77.68%), Query Frame = 1 
Query:   16 ESDVCLECSAVVTDASFLGCLTNVEAAFGSCEFTEQAACCLNEVSGIDCVSDLATFEFFECLYDLTEPCDVTLTCSGDTTDGG-TTPAPA-AVSGTDTPVAGGGRGAETLAP 345
            ESDVCLEC++  +  SFL CL  + A FGSCE+ EQ ACCLNEVSGIDCVSD  TFEFFECLYD TE CD   TC+GDTT+GG TTPAPA A SGTDTPVAGG   AET AP
Sbjct:   42 ESDVCLECTSFTSGDSFLDCLAGIGAEFGSCEYVEQQACCLNEVSGIDCVSDPVTFEFFECLYDPTEACDGGWTCNGDTTNGGDTTPAPAPAASGTDTPVAGGXXXAETAAP 153
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14692.3586.1 vs. uniprot
Match: A0A6H5K7K6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K6_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 4.040e-35
Identity = 76/113 (67.26%), Postives = 83/113 (73.45%), Query Frame = 1 
Query:   10 SDESDVCLECSAVVTDASFLGCLTNVEAAFGSCEFTEQAACCLNEVSGIDCVSDLATFEFFECLYDLTEPCDVTLTCSGDTTDGG-TTPAPAAVSGTDTPVAGGGRGAETLAP 345
            S ESDVC EC+   +  SF+ CL  + A  GSCE+TEQ ACCLNEVSGIDC+SD  TFEFFE  YD TE CD   TCSGD T+GG TTPAPAA  GTDTPVAG G GAET AP
Sbjct:   17 SVESDVCTECTFFTSGNSFVDCLAGIGAEIGSCEYTEQLACCLNEVSGIDCLSDPVTFEFFEYFYDPTEACDGGWTCSGDITNGGDTTPAPAAAFGTDTPVAGRGGGAETTAP 129
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14692.3586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FST2_ECTSI1.180e-5475.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRJ7_9PHAE1.130e-4955.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FST4_ECTSI1.030e-3671.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7K6_9PHAE4.040e-3567.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14692contigEcto-sp13_S_contig14692:648..1955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1272
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_001540.1
Cds size1272
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462783.8140044-CDS-Ecto-sp13_S_contig14692:647..15601681462783.8140044-CDS-Ecto-sp13_S_contig14692:647..1560Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14692 648..1560 +
1681462783.8248777-CDS-Ecto-sp13_S_contig14692:1596..19551681462783.8248777-CDS-Ecto-sp13_S_contig14692:1596..1955Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14692 1597..1955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14692.3586.1prot_Ecto-sp13_S_contig14692.3586.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14692 648..1955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14692.3586.1

>prot_Ecto-sp13_S_contig14692.3586.1 ID=prot_Ecto-sp13_S_contig14692.3586.1|Name=mRNA_Ecto-sp13_S_contig14692.3586.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=424bp
TRPSDESDVCLECSAVVTDASFLGCLTNVEAAFGSCEFTEQAACCLNEVS
GIDCVSDLATFEFFECLYDLTEPCDVTLTCSGDTTDGGTTPAPAAVSGTD
TPVAGGGRGAETLAPTPAGDGGGSGPSAPTAAPAPDGGRPAPPSETSAPA
GAGGAETMMPSTAADGGMPVAPSDTSAPAAAPAADGAETMMPSAAADGGI
PGAPSDTTAPAAAPAANGAETMMPTVAADGGRPGAPSDTTAPAGAGGAET
MMPSAAAEGGMPGAPSDTTAPAASGGAEGTVMPTTADGDRELDFTPAPSS
SAGADGGMPGAPSDTTAPAAAGGVEGTMMPTTADGDRELDTPSPAAGGGG
GGGGGSAPTASDETTAPTNAAGDVVSESVAPTALEDADDIDTTSGGRGLL
STSVGGVVTGLLAFCTAVVAVVL*
back to top

mRNA from alignment at Ecto-sp13_S_contig14692:648..1955+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14692.3586.1 ID=mRNA_Ecto-sp13_S_contig14692.3586.1|Name=mRNA_Ecto-sp13_S_contig14692.3586.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1308bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14692:648..1955+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCCGTCCTTCAGATGAGAGCGACGTCTGCCTCGAGTGTTCCGCCGTCGT
AACGGACGCTTCCTTCTTGGGCTGCCTGACGAACGTTGAGGCCGCGTTCG
GCTCCTGCGAGTTCACGGAGCAGGCGGCGTGCTGCTTGAACGAGGTCTCC
GGCATCGACTGCGTGAGCGACCTGGCTACCTTCGAGTTCTTCGAGTGCCT
TTACGACCTGACCGAGCCGTGCGACGTCACCTTGACGTGCAGCGGCGACA
CCACCGACGGCGGCACGACCCCGGCGCCGGCCGCCGTTTCCGGAACGGAC
ACCCCTGTCGCCGGTGGCGGCCGCGGGGCCGAGACCCTTGCCCCGACACC
CGCCGGTGACGGCGGCGGCAGCGGGCCGTCTGCGCCCACCGCCGCGCCCG
CCCCTGACGGCGGCCGGCCTGCCCCACCCTCGGAGACGTCCGCACCCGCT
GGTGCCGGCGGAGCTGAGACCATGATGCCCTCTACTGCCGCAGACGGCGG
CATGCCCGTTGCGCCCTCCGACACCTCCGCGCCTGCTGCCGCACCTGCGG
CGGACGGAGCTGAGACCATGATGCCCTCTGCTGCCGCAGACGGCGGCATA
CCCGGTGCGCCTTCCGACACCACCGCGCCTGCTGCTGCACCTGCGGCGAA
CGGAGCTGAGACCATGATGCCCACCGTCGCCGCGGACGGCGGTAGGCCCG
GTGCGCCCTCGGACACCACCGCGCCCGCTGGTGCCGGCGGAGCTGAGACC
ATGATGCCCTCTGCTGCCGCAGAGGGCGGCATGCCCGGTGCGCCCTCCGA
CACCACCGCGCCCGCTGCGTCCGGTGGCGCCGAAGGGACCGTGATGCCCA
CTACCGCAGACGGCGACCGCGAGTTGGACTTCACACCCGCCCCTTCTTCT
TCTGCTGGTGCCGGTGGAGCTGAGACCATGATGCCCTCTGCTGCCGTAGA
TGGCGGCATGCCCGGTGCGCCCTCCGACACCACCGCGCCCGCTGCGGCCG
GTGGAGTCGAAGGGACCATGATGCCCACTACCGCAGACGGCGACCGCGAG
TTGGACACCCCCTCCCCCGCCGCTGGCGGCGGCGGCGGCGGCGGCGGAGG
CTCCGCTCCCACCGCTTCCGACGAGACCACGGCGCCGACCAATGCTGCGG
GTGATGTCGTCAGCGAAAGCGTGGCGCCGACCGCCCTCGAAGACGCCGAC
GACATCGACACGACCTCGGGGGGGCGCGGCCTGTTGTCGACGAGTGTCGG
AGGCGTTGTGACAGGCCTACTCGCGTTCTGCACCGCCGTCGTCGCCGTGG
TTTTGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14692:648..1955+

>mRNA_Ecto-sp13_S_contig14692.3586.1 ID=mRNA_Ecto-sp13_S_contig14692.3586.1|Name=mRNA_Ecto-sp13_S_contig14692.3586.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1272bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14692:648..1955+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCCGTCCTTCAGATGAGAGCGACGTCTGCCTCGAGTGTTCCGCCGTCGT
AACGGACGCTTCCTTCTTGGGCTGCCTGACGAACGTTGAGGCCGCGTTCG
GCTCCTGCGAGTTCACGGAGCAGGCGGCGTGCTGCTTGAACGAGGTCTCC
GGCATCGACTGCGTGAGCGACCTGGCTACCTTCGAGTTCTTCGAGTGCCT
TTACGACCTGACCGAGCCGTGCGACGTCACCTTGACGTGCAGCGGCGACA
CCACCGACGGCGGCACGACCCCGGCGCCGGCCGCCGTTTCCGGAACGGAC
ACCCCTGTCGCCGGTGGCGGCCGCGGGGCCGAGACCCTTGCCCCGACACC
CGCCGGTGACGGCGGCGGCAGCGGGCCGTCTGCGCCCACCGCCGCGCCCG
CCCCTGACGGCGGCCGGCCTGCCCCACCCTCGGAGACGTCCGCACCCGCT
GGTGCCGGCGGAGCTGAGACCATGATGCCCTCTACTGCCGCAGACGGCGG
CATGCCCGTTGCGCCCTCCGACACCTCCGCGCCTGCTGCCGCACCTGCGG
CGGACGGAGCTGAGACCATGATGCCCTCTGCTGCCGCAGACGGCGGCATA
CCCGGTGCGCCTTCCGACACCACCGCGCCTGCTGCTGCACCTGCGGCGAA
CGGAGCTGAGACCATGATGCCCACCGTCGCCGCGGACGGCGGTAGGCCCG
GTGCGCCCTCGGACACCACCGCGCCCGCTGGTGCCGGCGGAGCTGAGACC
ATGATGCCCTCTGCTGCCGCAGAGGGCGGCATGCCCGGTGCGCCCTCCGA
CACCACCGCGCCCGCTGCGTCCGGTGGCGCCGAAGGGACCGTGATGCCCA
CTACCGCAGACGGCGACCGCGAGTTGGACTTCACACCCGCCCCTTCTTCT
TCTGCTGGTGCCGATGGCGGCATGCCCGGTGCGCCCTCCGACACCACCGC
GCCCGCTGCGGCCGGTGGAGTCGAAGGGACCATGATGCCCACTACCGCAG
ACGGCGACCGCGAGTTGGACACCCCCTCCCCCGCCGCTGGCGGCGGCGGC
GGCGGCGGCGGAGGCTCCGCTCCCACCGCTTCCGACGAGACCACGGCGCC
GACCAATGCTGCGGGTGATGTCGTCAGCGAAAGCGTGGCGCCGACCGCCC
TCGAAGACGCCGACGACATCGACACGACCTCGGGGGGGCGCGGCCTGTTG
TCGACGAGTGTCGGAGGCGTTGTGACAGGCCTACTCGCGTTCTGCACCGC
CGTCGTCGCCGTGGTTTTGTAA
back to top