mRNA_Ecto-sp13_S_contig1469.3585.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1469.3585.1
Unique NamemRNA_Ecto-sp13_S_contig1469.3585.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1469.3585.1 vs. uniprot
Match: D8LN44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN44_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 6.030e-19
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    7 VWDDALGYLLGPAVFAYEQERVSGASFGGDDFQDAIQGAVPDR 135
            VWDDALGYLLGPAVFAYEQER+ GASFGGD+FQDA+QGAVPDR
Sbjct:  530 VWDDALGYLLGPAVFAYEQERLCGASFGGDNFQDAVQGAVPDR 572
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BLAST of mRNA_Ecto-sp13_S_contig1469.3585.1 vs. uniprot
Match: A0A8C4SXH6_ERPCA (Centrosomal protein of 76 kDa n=4 Tax=Polypteridae TaxID=8289 RepID=A0A8C4SXH6_ERPCA)

HSP 1 Score: 67.4 bits (163), Expect = 1.260e-11
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 SKVWDDALGYLLGPAVFAYEQERVSGASFGGDDFQDAIQGAVPDRQAGHNY 153
            S VWDD L YLL PA+FAYE ER+SG S G ++FQDAI+  VPD   GH +
Sbjct:  510 STVWDDNLSYLLSPALFAYEMERISGVSSGNEEFQDAIRKVVPD---GHTF 557
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BLAST of mRNA_Ecto-sp13_S_contig1469.3585.1 vs. uniprot
Match: A0A7S2D6A4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D6A4_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.930e-10
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    7 VWDDALGYLLGPAVFAYEQERVSGASFGGDDFQDAIQGAVPDRQAGHNY 153
            +WDD L Y L PA+ AYE +RV+G+SFG DDFQD I+ +VPD   GH +
Sbjct:  568 IWDDDLSYYLKPALSAYEADRVTGSSFGNDDFQDVIKRSVPD---GHQF 613
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BLAST of mRNA_Ecto-sp13_S_contig1469.3585.1 vs. uniprot
Match: UPI0008550536 (centrosomal protein of 76 kDa isoform X2 n=2 Tax=Nanorana parkeri TaxID=125878 RepID=UPI0008550536)

HSP 1 Score: 62.0 bits (149), Expect = 1.000e-9
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    7 VWDDALGYLLGPAVFAYEQERVSGASFGGDDFQDAIQGAVPDRQAGHNY 153
            VW+D L YLL PA+ AYE ER +G S G ++FQDAIQ AVPD   GH +
Sbjct:  549 VWEDQLSYLLSPALAAYEMERCTGISAGNEEFQDAIQRAVPD---GHTF 594
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BLAST of mRNA_Ecto-sp13_S_contig1469.3585.1 vs. uniprot
Match: A0A8J5XJ55_DIALT (CEP76-C2 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XJ55_DIALT)

HSP 1 Score: 52.0 bits (123), Expect = 3.430e-6
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:   10 WDDALGYLLGPAVFAYEQERVSGASFGGDDFQDAIQGAVPD 132
            WDD L   L PA+ AYE ERVSGA++G ++FQ AI+  VP+
Sbjct:  546 WDDRLSAYLTPALAAYELERVSGAAYGNEEFQQAIKRHVPE 586
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1469.3585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LN44_ECTSI6.030e-1990.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8C4SXH6_ERPCA1.260e-1160.78Centrosomal protein of 76 kDa n=4 Tax=Polypteridae... [more]
A0A7S2D6A4_9STRA3.930e-1057.14Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
UPI00085505361.000e-959.18centrosomal protein of 76 kDa isoform X2 n=2 Tax=N... [more]
A0A8J5XJ55_DIALT3.430e-656.10CEP76-C2 domain-containing protein n=1 Tax=Diacron... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1469contigEcto-sp13_S_contig1469:326..508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score87.8
Seed ortholog evalue1.9e-15
Seed eggNOG ortholog2880.D8LN44
Preferred nameCEP76
Model size183
KEGG koko:K16457
Hectar predicted targeting categoryother localisation
GOsGO:0000086,GO:0000278,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0006996,GO:0007049,GO:0007346,GO:0008150,GO:0009987,GO:0010389,GO:0010564,GO:0010824,GO:0015630,GO:0016043,GO:0022402,GO:0022406,GO:0022607,GO:0030030,GO:0030031,GO:0032886,GO:0032991,GO:0033043,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0046599,GO:0046605,GO:0050789,GO:0050794,GO:0051128,GO:0051179,GO:0051493,GO:0051640,GO:0051641,GO:0051726,GO:0060271,GO:0065007,GO:0070507,GO:0070925,GO:0071840,GO:0097711,GO:0120031,GO:0120036,GO:0140056,GO:1901987,GO:1901990,GO:1902115,GO:1902749,GO:1903047
Exons1
EggNOG free text desc.regulation of centriole replication
EggNOG OGs28I44@1,2QQEI@2759
Cds size183
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462783.7591484-CDS-Ecto-sp13_S_contig1469:325..5081681462783.7591484-CDS-Ecto-sp13_S_contig1469:325..508Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1469 326..508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1469.3585.1prot_Ecto-sp13_S_contig1469.3585.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1469 326..508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1469.3585.1

>prot_Ecto-sp13_S_contig1469.3585.1 ID=prot_Ecto-sp13_S_contig1469.3585.1|Name=mRNA_Ecto-sp13_S_contig1469.3585.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
SKVWDDALGYLLGPAVFAYEQERVSGASFGGDDFQDAIQGAVPDRQAGHN
YAYKTILTLF*
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mRNA from alignment at Ecto-sp13_S_contig1469:326..508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1469.3585.1 ID=mRNA_Ecto-sp13_S_contig1469.3585.1|Name=mRNA_Ecto-sp13_S_contig1469.3585.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1469:326..508+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGAAGGTGTGGGACGACGCCCTCGGCTACCTGCTGGGGCCCGCGGTTTT
CGCCTACGAGCAGGAGCGCGTGTCCGGAGCCTCTTTCGGCGGCGATGACT
TCCAGGATGCCATTCAAGGGGCAGTTCCAGACAGGCAAGCAGGCCACAAT
TACGCGTACAAGACAATATTAACATTGTTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1469:326..508+

>mRNA_Ecto-sp13_S_contig1469.3585.1 ID=mRNA_Ecto-sp13_S_contig1469.3585.1|Name=mRNA_Ecto-sp13_S_contig1469.3585.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1469:326..508+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGAAGGTGTGGGACGACGCCCTCGGCTACCTGCTGGGGCCCGCGGTTTT
CGCCTACGAGCAGGAGCGCGTGTCCGGAGCCTCTTTCGGCGGCGATGACT
TCCAGGATGCCATTCAAGGGGCAGTTCCAGACAGGCAAGCAGGCCACAAT
TACGCGTACAAGACAATATTAACATTGTTTTAG
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