mRNA_Ecto-sp13_S_contig14671.3577.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14671.3577.1
Unique NamemRNA_Ecto-sp13_S_contig14671.3577.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14671.3577.1 vs. uniprot
Match: A0A6H5K7W3_9PHAE (PUM-HD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7W3_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 9.180e-43
Identity = 83/87 (95.40%), Postives = 85/87 (97.70%), Query Frame = 1
Query:   13 QEVVPQLVDSYMLLLSTRPGSMAAAMCAAHGGAKERKRMMRALKGYVIASLMHRDAYIAVIRLVESVDDTVTCQKTILAELLKPKEV 273
            QE+VPQLVDSY+LLLSTRPGSMAAAMCAAHGGAKERKRMMRALKGYV ASLMHRDAYIAVIRLVESVDDTVTCQK ILAELLKPKEV
Sbjct:  361 QELVPQLVDSYILLLSTRPGSMAAAMCAAHGGAKERKRMMRALKGYVAASLMHRDAYIAVIRLVESVDDTVTCQKAILAELLKPKEV 447          
BLAST of mRNA_Ecto-sp13_S_contig14671.3577.1 vs. uniprot
Match: A0A835Z7T9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T9_9STRA)

HSP 1 Score: 115 bits (289), Expect = 3.990e-28
Identity = 58/83 (69.88%), Postives = 71/83 (85.54%), Query Frame = 1
Query:   16 EVVPQLVDSYMLLLSTRPGSMAAAMCAAHGGAKERKRMMRALKGYVIASLMHRDAYIAVIRLVESVDDTVTCQKTILAELLKP 264
            ++VP ++D YM LLSTR GS AAA+CAA+G AK+RKRMM+  KG+V  SLMHRDAY+AV+RLV SVDDTVTCQK++LAELL P
Sbjct:  386 DMVPTVIDGYMALLSTRDGSRAAALCAAYGSAKDRKRMMKGFKGFVGTSLMHRDAYLAVLRLVASVDDTVTCQKSVLAELLVP 468          
BLAST of mRNA_Ecto-sp13_S_contig14671.3577.1 vs. uniprot
Match: D7FHP3_ECTSI (PUM-HD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHP3_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.370e-22
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 1
Query:   13 QEVVPQLVDSYMLLLSTRPGSMAAAMCAAHGGAKERKRMMRALKGYVIASLMHRD 177
            QE+VPQLVDSYMLLLSTRPGSMAAAMCAAHGGAKERKRMMRALKGYV ASL H D
Sbjct:  362 QELVPQLVDSYMLLLSTRPGSMAAAMCAAHGGAKERKRMMRALKGYVAASLTHSD 416          
BLAST of mRNA_Ecto-sp13_S_contig14671.3577.1 vs. uniprot
Match: A0A4D9CTP5_9STRA (PUM-HD domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTP5_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.110e-18
Identity = 43/87 (49.43%), Postives = 63/87 (72.41%), Query Frame = 1
Query:   13 QEVVPQLVDSYMLLLSTRPGSMAAAMCAAHGGAKERKRMMRALKGYVIASLMHRDAYIAVIRLVESVDDTVTCQKTILAELLKPKEV 273
            +E+VP L+D  +LL  TRPG  A A CAA+G  K+RK+M++ALKGYV+ +L+H+DAY+ ++RL + +DDTV   K +  ELL+   V
Sbjct:  260 RELVPTLLDYLLLLTGTRPGCKALAECAAYGTPKDRKKMLKALKGYVVPTLLHKDAYLLILRLADVIDDTVAFNKAVWQELLERNAV 346          
BLAST of mRNA_Ecto-sp13_S_contig14671.3577.1 vs. uniprot
Match: A0A7S1ZSE9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZSE9_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.190e-18
Identity = 44/81 (54.32%), Postives = 59/81 (72.84%), Query Frame = 1
Query:   13 QEVVPQLVDSYMLLLSTRPGSMAAAMCAAHGGAKERKRMMRALKGYVIASLMHRDAYIAVIRLVESVDDTVTCQKTILAEL 255
            + + P +VD  + +LSTR G+   A CAA+G  K+RK +MR+LKGY  +SL+HRDAYIAV+RL + VDDTVT  K +L EL
Sbjct:    2 RSIPPSVVDHSIHMLSTRAGARVVAECAAYGTVKDRKNIMRSLKGYTRSSLLHRDAYIAVLRLADVVDDTVTLDKNVLVEL 82          
BLAST of mRNA_Ecto-sp13_S_contig14671.3577.1 vs. uniprot
Match: A0A7S4QEX1_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QEX1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 7.180e-18
Identity = 44/81 (54.32%), Postives = 59/81 (72.84%), Query Frame = 1
Query:   13 QEVVPQLVDSYMLLLSTRPGSMAAAMCAAHGGAKERKRMMRALKGYVIASLMHRDAYIAVIRLVESVDDTVTCQKTILAEL 255
            + + P +VD  + +LSTR G+   A CAA+G  K+RK +MR+LKGY  +SL+HRDAYIAV+RL + VDDTVT  K +L EL
Sbjct:  264 RSIAPSVVDHSIHMLSTRAGARVVAECAAYGTVKDRKNIMRSLKGYTRSSLLHRDAYIAVLRLADVVDDTVTLDKNVLVEL 344          
BLAST of mRNA_Ecto-sp13_S_contig14671.3577.1 vs. uniprot
Match: A0A7S2XI69_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XI69_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.350e-17
Identity = 41/76 (53.95%), Postives = 61/76 (80.26%), Query Frame = 1
Query:   31 LVDSYMLLLSTRPGSMAAAMCAAHGGAKERKRMMRALKGYVIASLMHRDAYIAVIRLVESVDDTVTCQKTILAELL 258
            +VD  +  LSTRPGS+  A CA++G  K+RKR++++LKGY  +SL+HRDAYIA++R+V+  DDTV+  K++LAE+L
Sbjct:   31 VVDHSIHFLSTRPGSIVVAACASYGTPKDRKRIIKSLKGYTRSSLLHRDAYIAILRIVDVTDDTVSVHKSVLAEIL 106          
BLAST of mRNA_Ecto-sp13_S_contig14671.3577.1 vs. uniprot
Match: A0A7S1TQU4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQU4_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.930e-17
Identity = 44/85 (51.76%), Postives = 65/85 (76.47%), Query Frame = 1
Query:   16 EVVPQLVDSYMLLLSTRPGSMAAAMCAAHGGAKERKRMMRALKGYVIASLMHRDAYIAVIRLVESVDDTVTCQKTILAELLKPKE 270
            +  P L +  ++LL++R G+ AAA+ AA+GGA+ERKRM +ALKG+V A+L HRDAYIA+++LV+  DDTV+ +K IL E+ +  E
Sbjct:   94 KAAPALAEHAIMLLTSREGARAAALVAAYGGARERKRMTKALKGHVKATLHHRDAYIALLKLVDVTDDTVSTKKNILPEIFEVAE 178          
BLAST of mRNA_Ecto-sp13_S_contig14671.3577.1 vs. uniprot
Match: A0A7S1CXQ3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXQ3_CYCTE)

HSP 1 Score: 82.8 bits (203), Expect = 1.030e-16
Identity = 40/76 (52.63%), Postives = 59/76 (77.63%), Query Frame = 1
Query:   31 LVDSYMLLLSTRPGSMAAAMCAAHGGAKERKRMMRALKGYVIASLMHRDAYIAVIRLVESVDDTVTCQKTILAELL 258
            +VD  + +LSTR G+   A CA +G AK+RKR+M++LKGY  +SL+HRDAY+A++RL++  DDTV   K++LAE+L
Sbjct:   50 VVDHSIHMLSTRAGTCVVAACAGYGTAKDRKRIMKSLKGYTRSSLLHRDAYLAILRLIQVTDDTVALHKSVLAEIL 125          
BLAST of mRNA_Ecto-sp13_S_contig14671.3577.1 vs. uniprot
Match: A0A7S2SB37_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SB37_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.150e-16
Identity = 44/79 (55.70%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   19 VVPQLVDSYMLLLSTRPGSMAAAMCAAHGGAKERKRMMRALKGYVIASLMHRDAYIAVIRLVESVDDTVTCQKTILAEL 255
            + P + D  + LLSTR G+   A CAA+   KERKRMMR+LKGY  +SL H DAYIA++RL++  DDTVT QK +L EL
Sbjct:  282 IAPSISDHAIHLLSTRSGARVVAECAAYSTPKERKRMMRSLKGYTRSSLKHADAYIALLRLIDVTDDTVTAQKLLLEEL 360          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14671.3577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7W3_9PHAE9.180e-4395.40PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835Z7T9_9STRA3.990e-2869.88Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
D7FHP3_ECTSI1.370e-2292.73PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A4D9CTP5_9STRA2.110e-1849.43PUM-HD domain-containing protein n=2 Tax=Monodopsi... [more]
A0A7S1ZSE9_9STRA5.190e-1854.32Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4QEX1_9STRA7.180e-1854.32Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2XI69_9STRA1.350e-1753.95Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S1TQU4_9STRA2.930e-1751.76Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1CXQ3_CYCTE1.030e-1652.63Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2SB37_9STRA1.150e-1655.70Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14671contigEcto-sp13_S_contig14671:221..896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score102.1
Seed ortholog evalue1.4e-19
Seed eggNOG ortholog2880.D7FHP3
Preferred namePUF8
Model size273
KEGG koko:K14844
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.mRNA binding
EggNOG OGsKOG2050@1,KOG2050@2759
Cds size273
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462783.2455518-CDS-Ecto-sp13_S_contig14671:220..3931681462783.2455518-CDS-Ecto-sp13_S_contig14671:220..393Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14671 221..393 +
1681462783.2622597-CDS-Ecto-sp13_S_contig14671:796..8961681462783.2622597-CDS-Ecto-sp13_S_contig14671:796..896Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14671 797..896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14671.3577.1prot_Ecto-sp13_S_contig14671.3577.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14671 221..896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14671.3577.1

>prot_Ecto-sp13_S_contig14671.3577.1 ID=prot_Ecto-sp13_S_contig14671.3577.1|Name=mRNA_Ecto-sp13_S_contig14671.3577.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
THVFQEVVPQLVDSYMLLLSTRPGSMAAAMCAAHGGAKERKRMMRALKGY
VIASLMHRDAYIAVIRLVESVDDTVTCQKTILAELLKPKEV
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mRNA from alignment at Ecto-sp13_S_contig14671:221..896+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14671.3577.1 ID=mRNA_Ecto-sp13_S_contig14671.3577.1|Name=mRNA_Ecto-sp13_S_contig14671.3577.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=676bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14671:221..896+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCCACGTGTTTCAGGAGGTTGTGCCGCAGCTGGTGGACTCGTACATGCT CCTCCTGTCCACCCGCCCCGGGTCAATGGCGGCGGCGATGTGCGCGGCGC ACGGGGGCGCCAAGGAACGCAAGAGGATGATGCGCGCCCTCAAGGGATAC GTGATCGCCTCGCTCATGCACAGGTACTGAGAGCGTAGCGTAGCGGGGGT CGATGACGGGCCTTGTTTTCGGCCGCTTATGGTGAGCGTTTTTGGGCGCT TGGGTTATTTTGTGGCAGGCTGTGCGGACGTCGTCGTGCACTGTCCGGTG TGTTCAGGGCTACCGGTGCATGCTGGCAGTATTTTTATTGATGTCGGTGA TGTTGAGCTTGAAAGGTTTTCTCTGGCCCATTTCTCAGATGGATCTATAG GCACGCGCGTATGTTTTTGAACGAGGAATGAATAGCTTGTCGATCACGGG CGGTCTTGTGGGAAAAATCGCCGTTCTTTTCAGGACGAGTTGTCCGAGTT GTCAATGGTCTAACATCTAAGGCATGCAAAACATGAGGAACCCCCCCCCC CCCCTCCGCTTTTTGGGTTCCTTTAGGGATGCCTACATCGCCGTGATCAG GCTGGTGGAGTCGGTGGACGACACCGTCACCTGCCAGAAGACCATCCTGG CCGAGCTCCTCAAGCCAAAAGAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14671:221..896+

>mRNA_Ecto-sp13_S_contig14671.3577.1 ID=mRNA_Ecto-sp13_S_contig14671.3577.1|Name=mRNA_Ecto-sp13_S_contig14671.3577.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14671:221..896+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCCACGTGTTTCAGGAGGTTGTGCCGCAGCTGGTGGACTCGTACATGCT
CCTCCTGTCCACCCGCCCCGGGTCAATGGCGGCGGCGATGTGCGCGGCGC
ACGGGGGCGCCAAGGAACGCAAGAGGATGATGCGCGCCCTCAAGGGATAC
GTGATCGCCTCGCTCATGCACAGGGATGCCTACATCGCCGTGATCAGGCT
GGTGGAGTCGGTGGACGACACCGTCACCTGCCAGAAGACCATCCTGGCCG
AGCTCCTCAAGCCAAAAGAGGTG
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