mRNA_Ecto-sp13_S_contig14668.3573.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14668.3573.1
Unique NamemRNA_Ecto-sp13_S_contig14668.3573.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14668.3573.1 vs. uniprot
Match: D7FMP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP1_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.250e-27
Identity = 76/163 (46.63%), Postives = 78/163 (47.85%), Query Frame = 1 
Query:    1 QVLMKLMPPKANSLTTEHIKSRLQKYRLHAHRSKEEFLEFFGLRLEGKFADFLQKEGWRSLSPAHGREGQHDGPEYDSAGGXXXXXXXXXXXXXXXXXXXXSSGEPAPAAAVKIDGKMVGDIRDLGAQCVREQFHLQEVLRQHISAQLKLQAEIHEHLTTAAA 489
            +VLMKLMPPKANSLTTEHIKSRLQKYRLHAHRSK                                                                                    VGDIRDLGAQCVREQ +LQEVLRQHISAQLKLQAEIHEHLTTAAA
Sbjct:   37 KVLMKLMPPKANSLTTEHIKSRLQKYRLHAHRSK------------------------------------------------------------------------------------VGDIRDLGAQCVREQLYLQEVLRQHISAQLKLQAEIHEHLTTAAA 115
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BLAST of mRNA_Ecto-sp13_S_contig14668.3573.1 vs. uniprot
Match: A0A7S4D6B3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6B3_HETAK)

HSP 1 Score: 90.1 bits (222), Expect = 4.120e-19
Identity = 62/162 (38.27%), Postives = 85/162 (52.47%), Query Frame = 1 
Query:    1 QVLMKLMPPKANSLTTEHIKSRLQKYRLHAHRSKEEFLEFFGLRLEGKFADFLQKEGWRS----LSPAHGREGQHDGPEYDSAGGXXXXXXXXXXXXXXXXXXXXSSGEPAPAAAVKIDGKMVGDIRDLGAQCVREQFHLQEVLRQHISAQLKLQAEIHEHL 474
            +VLM+LMP   NSLTTEHIKS LQKYRLH  RSKEEFL+++   L+  F DF+ +EGWR+    L+ A+G + + DG    +A                         E   A    +D   +  I++L  + V EQ  LQ  L+ HI  Q +LQ  +H+ L
Sbjct:   53 KVLMQLMPL-TNSLTTEHIKSHLQKYRLHYTRSKEEFLQYYDSHLKRDFEDFVSQEGWRNTEALLAQANGMDTEGDGGGSSAA-----------------TTGQEPGDEDENALVDDLDEVPIEVIQELNDKIVHEQMQLQATLQHHIMVQTRLQKAMHDQL 196
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BLAST of mRNA_Ecto-sp13_S_contig14668.3573.1 vs. uniprot
Match: A0A6H5KZR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZR4_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.340e-17
Identity = 42/46 (91.30%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:  352 MVGDIRDLGAQCVREQFHLQEVLRQHISAQLKLQAEIHEHLTTAAA 489
            MVGDIRDLGAQCVREQFHLQ+VLRQHISAQLKLQAEI EHLT A A
Sbjct:    1 MVGDIRDLGAQCVREQFHLQKVLRQHISAQLKLQAEIQEHLTAAPA 46
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BLAST of mRNA_Ecto-sp13_S_contig14668.3573.1 vs. uniprot
Match: A0A835Z7B0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7B0_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.950e-13
Identity = 41/63 (65.08%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    1 QVLMKLMPPKANSLTTEHIKSRLQKYRLHAHRSKEEFLEFFGLRLEGKFADFLQKEGWRSLSP 189
            +VLMKLMP     LTTEHIKS LQKYRLH  RSK+EFLEFF LRL+ KF  F     WR+L P
Sbjct:  151 KVLMKLMP-NTEKLTTEHIKSHLQKYRLHYARSKDEFLEFFELRLKEKFGTFCAGHMWRNLPP 212
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BLAST of mRNA_Ecto-sp13_S_contig14668.3573.1 vs. uniprot
Match: A0A7R9YFR2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFR2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.470e-10
Identity = 49/156 (31.41%), Postives = 73/156 (46.79%), Query Frame = 1 
Query:    1 QVLMKLMPPKANSLTTEHIKSRLQKYRLHAHRSKEEFLEFFGLRLEGKFADFLQKEGWRSLSPAHGREGQHDGPEYDSAGGXXXXXXXXXXXXXXXXXXXXSSGEPAPAAAVKIDGKMVGDIRDLGAQCVREQFHLQEVLRQHISAQLKLQAEIHE 468
            +VLM  MP + + LTTEHIKS LQKYRLH  RSK EF+E +   L+  F  F  K+ WR  S + G E          + G                       +   +   ++D K +  I +  A+  R +  +QE L++ I+ Q++L+  I E
Sbjct:   84 KVLMNFMP-RVDMLTTEHIKSHLQKYRLHHGRSKNEFMEHYNQCLKADFRAFCDKQSWRYPSTSQGGE----------SAGVEERLKRATDKLNAAATTPKEDPDSTTSTDAQLDTKRLDAILETMAEQTRVKVDVQEKLQKEITTQMRLRRRIDE 228
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BLAST of mRNA_Ecto-sp13_S_contig14668.3573.1 vs. uniprot
Match: A0A4D9DAJ4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAJ4_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 8.720e-10
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:    1 QVLMKLMPPKANSLTTEHIKSRLQKYRLHAHRSKEEFLEFFGLRLEGKFADFLQKEGWRSLSPAHGREG 207
            +VLM LMP   ++LTTEHIKS LQKYRLH  RSKEEF+E++   + G FA F  +  W      +G +G
Sbjct:  308 KVLMDLMPM-TDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYNGYMRGPFASFCARREWEHDRSPYGPDG 375
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BLAST of mRNA_Ecto-sp13_S_contig14668.3573.1 vs. uniprot
Match: W7TSM2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSM2_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 9.470e-10
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:    1 QVLMKLMPPKANSLTTEHIKSRLQKYRLHAHRSKEEFLEFFGLRLEGKFADFLQKEGWRSLSPAHGREG 207
            +VLM LMP   ++LTTEHIKS LQKYRLH  RSKEEF+E++   + G FA F  +  W      +G +G
Sbjct:  337 KVLMDLMPM-TDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYNGYMRGPFASFCARREWEHDRSPYGPDG 404
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BLAST of mRNA_Ecto-sp13_S_contig14668.3573.1 vs. uniprot
Match: A0A6S6I6H3_9STRA (Phosphorus starvation response like 1 n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A6S6I6H3_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.770e-9
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:    1 QVLMKLMPPKANSLTTEHIKSRLQKYRLHAHRSKEEFLEFFGLRLEGKFADFLQKEGWRSLSPAHGREG 207
            +VLM LMP    +LTTEHIKS LQKYRLH +RSK+EF+E+F   + G FA F  +  W     + G  G
Sbjct:  372 KVLMDLMPM-TETLTTEHIKSHLQKYRLHGNRSKDEFVEYFNGYMRGPFASFCARREWEHERGSEGATG 439
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BLAST of mRNA_Ecto-sp13_S_contig14668.3573.1 vs. uniprot
Match: A0A7S3HM56_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HM56_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.830e-8
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 QVLMKLMPPKANSLTTEHIKSRLQKYRLHAHRSKEEFLEFFGLRLEGKFADFLQKEGWRSLS 186
            ++LM LMP + N L+TEHIKS LQKYR+H  RSK+EF +F+   ++  F  +   EGW+ L+
Sbjct:   85 KILMPLMPNETN-LSTEHIKSHLQKYRIHRQRSKDEFFDFYNNYMKDAFQQWENAEGWKHLA 145
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BLAST of mRNA_Ecto-sp13_S_contig14668.3573.1 vs. uniprot
Match: A0A482S6Z8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6Z8_9ARCH)

HSP 1 Score: 60.1 bits (144), Expect = 9.950e-8
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 QVLMKLMPPKANSLTTEHIKSRLQKYRLHAHRSKEEFLEFFGLRLEGKFADFLQKEGWRS 180
            ++++ L+PP    L TEHIKS LQKYR+H  RSKEEF+ F+   ++  F D+ +K GW S
Sbjct:   99 KLILPLLPP-TTELNTEHIKSHLQKYRVHKERSKEEFVAFYTEHIKHTFDDWDEKRGWES 157
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14668.3573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FMP1_ECTSI1.250e-2746.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4D6B3_HETAK4.120e-1938.27Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6H5KZR4_9PHAE1.340e-1791.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z7B0_9STRA2.950e-1365.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9YFR2_9STRA1.470e-1031.41Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A4D9DAJ4_9STRA8.720e-1050.72Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TSM2_9STRA9.470e-1050.72Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A6S6I6H3_9STRA1.770e-950.72Phosphorus starvation response like 1 n=1 Tax=Nann... [more]
A0A7S3HM56_9STRA1.830e-848.39Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A482S6Z8_9ARCH9.950e-848.33Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14668contigEcto-sp13_S_contig14668:414..2665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size502
Hectar predicted targeting categoryother localisation
Exons3
Cds size288
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462782.9328642-UTR-Ecto-sp13_S_contig14668:413..5151681462782.9328642-UTR-Ecto-sp13_S_contig14668:413..515Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14668 414..515 +
1681462782.9414585-UTR-Ecto-sp13_S_contig14668:1441..15531681462782.9414585-UTR-Ecto-sp13_S_contig14668:1441..1553Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14668 1442..1553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462782.9495127-CDS-Ecto-sp13_S_contig14668:1553..16931681462782.9495127-CDS-Ecto-sp13_S_contig14668:1553..1693Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14668 1554..1693 +
1681462782.957713-CDS-Ecto-sp13_S_contig14668:2517..26651681462782.957713-CDS-Ecto-sp13_S_contig14668:2517..2665Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14668 2518..2665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14668.3573.1prot_Ecto-sp13_S_contig14668.3573.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14668 1554..2665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14668.3573.1

>prot_Ecto-sp13_S_contig14668.3573.1 ID=prot_Ecto-sp13_S_contig14668.3573.1|Name=mRNA_Ecto-sp13_S_contig14668.3573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp
MGRSTIAREAVTGGKGEGGGGRRRRRPALGRLVSPPQRRRSRLMGKWWAT
SATWARSAYGSSSTCRRSCGSTSPHSSSSKRRSTSTSPPPPPVPPP
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mRNA from alignment at Ecto-sp13_S_contig14668:414..2665+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14668.3573.1 ID=mRNA_Ecto-sp13_S_contig14668.3573.1|Name=mRNA_Ecto-sp13_S_contig14668.3573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14668:414..2665+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGCTGATGAAGCTCATGCCCCCGAAGGCCAACAGCCTGACGACGGA
GCACATCAAGAGCCGGCTACAGAAGTACCGCCTCCACGCACACCGATCCA
AGGTTCGTTCGCCTTGCCCACTCTATTAATAGAATGCATTGCCTTTCTTT
CATTTCGTTATCATCCCATGTATTCTGGATACAATTGGTCTTCAAACCGT
TCGGAACAATTTCTGGGCGCACCACCCGCGGGGTCACGTAGGAGGAAGGG
CCACACAGGACTTTTTTTTTTCTCTAGTTCAGGACTTGTTTTTTGTTTTT
TACGGTGGACTGCCTTCGGATACCGACGAACCACGGTGCTGAAGACAGCC
GGGTGCCCCCTTCACACGCGGCATGTAGTATACGGAACATGAAATTGTGT
CCTACCGAAGCAGACTGGAACCGCCATGTCCTCGACACACGTCCAATTTG
AAGTGGGCGGTGGCCTCTTCACCAAGGAAGTGGGCCACCGAATGCCCTCG
CCATTTTCTTTGTTTTCTAGGGTTCGGTCATTGGTGTGTTGTGAGTGCCT
CCTGTTGATCTTGTATCGTCGTCGCCGTGACACACGGCTGTGACCCTGGT
AAAAACACAAGGCCCAAGAGCGCGGCTATTGCTGTCCTTGGTGGTGCCAG
CAGGGCGACTCCGTGTGTGCATAAAGCTTTGGCACAGCCCTACCTTCTAA
CCCAGGGTCTTTGATACGCTAGCCCTCGCCTCGTTAACGCCGCGTCTTTA
CGGGCGTTTAAAACTGAGCGTTTGCTCCCACAGTTTTGGATTGTTCCCAA
GAAAGAAAACTTTGCGAGGTGTGTTCGAAGGCAAATAGAATGCAAATTTT
CCAAATGTTTGGAAGCTACCGTTCCGACTTTCCTGGGCCCTCCCAAATTT
TTGGAAATACTCCTAGACTTTTCGATGAATGCGTTTTTTCTTGAAAAGTG
CACCATTTGAAAAAAAATCAGCCATATTTACAACACCCCCTTTGAAACCG
CGTCTTTCATCATCCCCCCCTCGCGCAGGAGGAGTTCCTAGAGTTTTTCG
GCCTCCGTCTTGAAGGAAAGTTCGCCGATTTCCTTCAGAAAGAAGGGTGG
CGAAGTCTCTCTCCCGCCCACGGGCGGGAAGGTCAGCACGATGGGCCGGA
GTACGATAGCGCGGGAGGCGGTGACGGGGGGGAAGGGGGAGGGGGGAGGA
GGGCGGCGGCGGCGGCGGCCGGCTCTGGGTCGTCTGGTGAGCCCGCCCCA
GCGGCGGCGGTCAAGATTGATGGGAAAATGGTGAGGGTGGGGTGGCGCCG
GTTGCTTTGAGATCGCTCTGTCTCTTGCCACTATCTGCCTTGATGGATAC
TGGCGAGGTGGGATGGTAGCGGTTGCTTTGTGGCGGATCTCTCTCTCTCT
CTCTCTCTCACACACACACACACACACATACACACACATTGTTTGGCCAT
TGTGTTCCCGCGTGGAGGTGGTATTTCGTTCTTGCTAGTGATGACTCGCG
GTTGGGGAAGGTCTTCCTCGAATCGTGACAGCAAAGCTCGGTCCAGGAAC
TGCCATGACGGCAGAAAGAGGAAATCATGGCCCGTTGTTTATCAAGAAAC
CATGACCAGTTACCCACCGCACCCGCTCTCCTAAAACTTCTGCTGTGTAA
CAATCATCTTCGTTCCCCAGCCCCCCTCTTGTCTACTGGTAAAAGGATGT
CCAGAGAGAGATCGCGAACCCGTTTGTGGAGATGACGTCCCGGAGTGGGT
GACAAGCCACATTTAAGGGATGAGTTCTTGCAAAGAATAACGTCACACAA
CGTTGTGGAAACTGCTACACGAAGCAGGCGAAAAGAAGCCCTTCGGTGTG
TCTGAGCAACGGGGACATGTCTTTAAAATAATCATCCTCTCTTGCGTGGT
TTTGTGTGCTCCCCTTTCGTGAGCCAGCCGACCGCGGCAAACGTCGAATG
TTTCGCCCCCTCCCCCCCCCCCCTCCCAAACGCATCGTGTACCCCCCCTG
TTGCTTTGATCGGTGAACAATTATCCTTGGCGAAGGATGCTAGAGTGCGT
GTACAACCTCGAGCTCAAGAGCATATCATCGCCCCCCCCATAAACGTCGG
TCAGGTGGGCGACATCCGCGACTTGGGCGCGCAGTGCGTACGGGAGCAGT
TCCACCTGCAGGAGGTCTTGCGGCAGCACATCTCCGCACAGCTCAAGCTC
CAAGCGGAGATCCACGAGCACCTCACCACCGCCGCCGCCGGTTCCACCGC
CG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14668:414..2665+

>mRNA_Ecto-sp13_S_contig14668.3573.1 ID=mRNA_Ecto-sp13_S_contig14668.3573.1|Name=mRNA_Ecto-sp13_S_contig14668.3573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14668:414..2665+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCCGGAGTACGATAGCGCGGGAGGCGGTGACGGGGGGGAAGGGGGA
GGGGGGAGGAGGGCGGCGGCGGCGGCGGCCGGCTCTGGGTCGTCTGGTGA
GCCCGCCCCAGCGGCGGCGGTCAAGATTGATGGGAAAATGGTGGGCGACA
TCCGCGACTTGGGCGCGCAGTGCGTACGGGAGCAGTTCCACCTGCAGGAG
GTCTTGCGGCAGCACATCTCCGCACAGCTCAAGCTCCAAGCGGAGATCCA
CGAGCACCTCACCACCGCCGCCGCCGGTTCCACCGCCG
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