mRNA_Ecto-sp13_S_contig14654.3564.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14654.3564.1
Unique NamemRNA_Ecto-sp13_S_contig14654.3564.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14654.3564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14654contigEcto-sp13_S_contig14654:3071..3312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size221
Hectar predicted targeting categoryother localisation
Exons2
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462782.3611662-CDS-Ecto-sp13_S_contig14654:3070..32441681462782.3611662-CDS-Ecto-sp13_S_contig14654:3070..3244Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14654 3071..3244 -
1681462782.372401-CDS-Ecto-sp13_S_contig14654:3267..33121681462782.372401-CDS-Ecto-sp13_S_contig14654:3267..3312Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14654 3268..3312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14654.3564.1prot_Ecto-sp13_S_contig14654.3564.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14654 3071..3312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14654.3564.1

>prot_Ecto-sp13_S_contig14654.3564.1 ID=prot_Ecto-sp13_S_contig14654.3564.1|Name=mRNA_Ecto-sp13_S_contig14654.3564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
TPTAARSERACVFDSKRTAAHGVEHICVPLSPSRLSPSSGPLAPRMVALP
SLPPRTHAEVTPYHEANRNVSG*
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mRNA from alignment at Ecto-sp13_S_contig14654:3071..3312-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14654.3564.1 ID=mRNA_Ecto-sp13_S_contig14654.3564.1|Name=mRNA_Ecto-sp13_S_contig14654.3564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=242bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14654:3071..3312- (Ectocarpus species13 EcNAP12_S_4_19m)
ACACCCACTGCCGCTCGCTCCGAAAGGGCCTGTGTCTTTGATAGTGTAGC
AACAGCAACCAACTGAAGAAGAGGACAGCAGCACACGGGGTCGAACATAT
ATGTGTCCCTCTTTCTCCCTCTAGACTGTCACCTTCCTCCGGTCCGCTCG
CACCGCGCATGGTGGCCCTTCCCTCCCTCCCTCCACGCACGCACGCTGAG
GTGACTCCCTACCACGAAGCGAACCGGAACGTTTCCGGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14654:3071..3312-

>mRNA_Ecto-sp13_S_contig14654.3564.1 ID=mRNA_Ecto-sp13_S_contig14654.3564.1|Name=mRNA_Ecto-sp13_S_contig14654.3564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14654:3071..3312- (Ectocarpus species13 EcNAP12_S_4_19m)
ACACCCACTGCCGCTCGCTCCGAAAGGGCCTGTGTCTTTGATAGTAAGAG
GACAGCAGCACACGGGGTCGAACATATATGTGTCCCTCTTTCTCCCTCTA
GACTGTCACCTTCCTCCGGTCCGCTCGCACCGCGCATGGTGGCCCTTCCC
TCCCTCCCTCCACGCACGCACGCTGAGGTGACTCCCTACCACGAAGCGAA
CCGGAACGTTTCCGGCTAA
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