mRNA_Ecto-sp13_S_contig14653.3563.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14653.3563.1
Unique NamemRNA_Ecto-sp13_S_contig14653.3563.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14653.3563.1 vs. uniprot
Match: D7FM01_ECTSI (Sedoheptulose-bisphosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM01_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 1.550e-63
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 1
Query:    1 RYTLRYTGGMVPDVYHILIKSKGVFSNVSSAAAKAKLRLLYECAPIALLIEAAGGASVIAPSPGAASGGTPLSVLDVEIDNLDKRLGLCLGGKEEVDVFNRFMFG 315
            RYTLRYTGGMVPDVYHILIK+KGVFSNVSSAAAKAKLRLLYECAPIALLIEAAGGASV+APSPGAASGGTPLSVLDVEIDNLDKRLGLCLGGKEEVDVFNRFMFG
Sbjct:  187 RYTLRYTGGMVPDVYHILIKNKGVFSNVSSAAAKAKLRLLYECAPIALLIEAAGGASVMAPSPGAASGGTPLSVLDVEIDNLDKRLGLCLGGKEEVDVFNRFMFG 291          
BLAST of mRNA_Ecto-sp13_S_contig14653.3563.1 vs. uniprot
Match: A0A7S3US16_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3US16_HETAK)

HSP 1 Score: 141 bits (355), Expect = 4.420e-41
Identity = 72/109 (66.06%), Postives = 84/109 (77.06%), Query Frame = 1
Query:    1 RYTLRYTGGMVPDVYHILIKSKGVFSNVSSAAAKAKLRLLYECAPIALLIEAAGGASVIAP----SPGAASGGTPLSVLDVEIDNLDKRLGLCLGGKEEVDVFNRFMFG 315
            RYTLRYTGG+VPD+YHIL K KGVF+NVSS +A AKLRLLYECAPIALL+EAAGGAS +AP    +P    G    SVLD  + +LD+R+G+C GG EEV  F RFMFG
Sbjct:   30 RYTLRYTGGLVPDIYHILTKGKGVFANVSSPSAIAKLRLLYECAPIALLVEAAGGASCLAPPPDYNPDEGPGAGVSSVLDAAVSDLDRRVGVCYGGAEEVAAFRRFMFG 138          
BLAST of mRNA_Ecto-sp13_S_contig14653.3563.1 vs. uniprot
Match: A0A835YXX8_9STRA (Sedoheptulose-bisphosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX8_9STRA)

HSP 1 Score: 139 bits (350), Expect = 5.020e-38
Identity = 73/113 (64.60%), Postives = 83/113 (73.45%), Query Frame = 1
Query:    1 RYTLRYTGGMVPDVYHILIKSKGVFSNVSSAAAKAKLRLLYECAPIALLIEAAGGASVIAPSPGAASGG---------TPLSVLDVEIDNLDKRLGLCLGGKEEVDVFNRFMF 312
            RYTLRYTGGMVPDVY+ L+K KGVF+NV S +A AKLRLLYECAPIALL+EAAGG SV+AP+PG               P SVLDV  D +D RLG+C GG +EV  FNRFMF
Sbjct:  227 RYTLRYTGGMVPDVYYSLVKGKGVFANVPSPSAPAKLRLLYECAPIALLVEAAGGRSVVAPAPGXXXXXXXXXXXXXXAPQSVLDVVADGMDVRLGVCYGGVDEVATFNRFMF 339          
BLAST of mRNA_Ecto-sp13_S_contig14653.3563.1 vs. uniprot
Match: A0A7S2UUN7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUN7_9STRA)

HSP 1 Score: 139 bits (350), Expect = 6.450e-38
Identity = 72/117 (61.54%), Postives = 87/117 (74.36%), Query Frame = 1
Query:    1 RYTLRYTGGMVPDVYHILIKSKGVFSNVSSAAAKAKLRLLYECAPIALLIEAAGGASVIAPS-PGAASGG------------TPLSVLDVEIDNLDKRLGLCLGGKEEVDVFNRFMF 312
            RYTLRY+GG+VPDVYHI IKSKG+ +NVSSA A+AKLRLLYECAP+ LL+EAAGGA+ I P  P   S              TP+S+LDV IDNLDKR+G+C G  EEVD++ RF+F
Sbjct:  237 RYTLRYSGGLVPDVYHIFIKSKGILTNVSSATAQAKLRLLYECAPVGLLVEAAGGATCIQPPFPPLPSEDXXXXXXXXXXPITPISILDVPIDNLDKRVGVCYGSTEEVDIYKRFLF 353          
BLAST of mRNA_Ecto-sp13_S_contig14653.3563.1 vs. uniprot
Match: A0A8J1ZBM4_9DINO (Fructose-bisphosphatase n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1ZBM4_9DINO)

HSP 1 Score: 128 bits (322), Expect = 4.780e-34
Identity = 66/104 (63.46%), Postives = 78/104 (75.00%), Query Frame = 1
Query:    1 RYTLRYTGGMVPDVYHILIKSKGVFSNVSSAAAKAKLRLLYECAPIALLIEAAGGASVIAPSPGAASGGTPLSVLDVEIDNLDKRLGLCLGGKEEVDVFNRFMF 312
            RYTLRYTGGMVPDVYHIL K KGVFSN SSA AKAKLRLLYECAPIA ++EAAGG S++ P   +A    P SVLDV +  LD+R+G+  G   E+++F   MF
Sbjct:  218 RYTLRYTGGMVPDVYHILFKGKGVFSNCSSAGAKAKLRLLYECAPIAFIVEAAGGKSLVDPMFASA----PQSVLDVAVAALDQRIGVAYGSSAEIELFQTHMF 317          
BLAST of mRNA_Ecto-sp13_S_contig14653.3563.1 vs. uniprot
Match: A0A8J1VZP9_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1VZP9_9DINO)

HSP 1 Score: 128 bits (322), Expect = 4.880e-34
Identity = 64/104 (61.54%), Postives = 79/104 (75.96%), Query Frame = 1
Query:    1 RYTLRYTGGMVPDVYHILIKSKGVFSNVSSAAAKAKLRLLYECAPIALLIEAAGGASVIAPSPGAASGGTPLSVLDVEIDNLDKRLGLCLGGKEEVDVFNRFMF 312
            +YTLRYTGGMVPDVYHIL K KG+F+N SS  AKAKLRLLYECAPIA L+E AGGAS++ P+  A     P SVL++    LD+R+G+  GGKEEVD+  + +F
Sbjct:  220 KYTLRYTGGMVPDVYHILFKGKGIFTNCSSPGAKAKLRLLYECAPIAFLVERAGGASLVDPAFSA----VPQSVLEIAAQELDQRIGVVYGGKEEVDLCQKHLF 319          
BLAST of mRNA_Ecto-sp13_S_contig14653.3563.1 vs. uniprot
Match: A0A482S7V3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S7V3_9ARCH)

HSP 1 Score: 127 bits (319), Expect = 1.360e-33
Identity = 64/104 (61.54%), Postives = 80/104 (76.92%), Query Frame = 1
Query:    1 RYTLRYTGGMVPDVYHILIKSKGVFSNVSSAAAKAKLRLLYECAPIALLIEAAGGASVIAPSPGAASGGTPLSVLDVEIDNLDKRLGLCLGGKEEVDVFNRFMF 312
            +YTLRY+GG+VPDVYHI IK  G+ SN SS AAKAKLRLLYECAPIAL++EAAGG S +  S  A     P+S+LDV + +LDKR+G+C G KEEV+ F  ++F
Sbjct:  218 KYTLRYSGGLVPDVYHIFIKQGGILSNASSKAAKAKLRLLYECAPIALIVEAAGGMSCVCSSE-ANEHCEPVSLLDVAVTDLDKRVGVCYGSKEEVERFKSYIF 320          
BLAST of mRNA_Ecto-sp13_S_contig14653.3563.1 vs. uniprot
Match: A0A7S0C0C6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C0C6_9STRA)

HSP 1 Score: 126 bits (316), Expect = 3.790e-33
Identity = 66/104 (63.46%), Postives = 77/104 (74.04%), Query Frame = 1
Query:    1 RYTLRYTGGMVPDVYHILIKSKGVFSNVSSAAAKAKLRLLYECAPIALLIEAAGGASVIAPSPGAASGGTPLSVLDVEIDNLDKRLGLCLGGKEEVDVFNRFMF 312
            RYTLRYTGGMVPD+YHIL K KGVF+NVSS  A AKLRLLYE API L+IE AGG +V     G       +SVLD+ I++LD+RLGLCLG  +EVD +  FMF
Sbjct:  220 RYTLRYTGGMVPDIYHILCKGKGVFTNVSSNVAPAKLRLLYEVAPIGLIIELAGGKTVHESREG-------VSVLDITIEDLDQRLGLCLGSTDEVDTYVNFMF 316          
BLAST of mRNA_Ecto-sp13_S_contig14653.3563.1 vs. uniprot
Match: K8YYP4_NANGC (Sedoheptulose-bisphosphatase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YYP4_NANGC)

HSP 1 Score: 121 bits (304), Expect = 2.650e-31
Identity = 63/104 (60.58%), Postives = 77/104 (74.04%), Query Frame = 1
Query:    1 RYTLRYTGGMVPDVYHILIKSKGVFSNVSSAAAKAKLRLLYECAPIALLIEAAGGASVIAPSPGAASGGTPLSVLDVEIDNLDKRLGLCLGGKEEVDVFNRFMF 312
            RYTLRYTGG+VPDVYH+LIK KGV +NV SAAAKAKLRLLYE APIAL++E AG AS  AP P       P+S+LD+ I  L+ + G+  GG EEV +F + M+
Sbjct:  225 RYTLRYTGGLVPDVYHVLIKGKGVVTNVVSAAAKAKLRLLYEAAPIALVMECAGAASCTAPGPNGEHP-EPISILDLPIMGLEFKCGVAYGGVEEVAIFKKLMY 327          
BLAST of mRNA_Ecto-sp13_S_contig14653.3563.1 vs. uniprot
Match: A0A7R9VKH4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VKH4_9STRA)

HSP 1 Score: 121 bits (304), Expect = 5.180e-31
Identity = 63/103 (61.17%), Postives = 75/103 (72.82%), Query Frame = 1
Query:    1 RYTLRYTGGMVPDVYHILIKSKGVFSNVSSAAAKAKLRLLYECAPIALLIEAAGGASVIAPSPGAASGGTPLSVLDVEIDNLDKRLGLCLGGKEEVDVFNRFM 309
            RYTLRY+GGMVPDVYH+  KSKGVFSNVSS  A+AKLRLLYE API L++E AGG +      G        SVLD  ID+LD+RLG+C G +EEV+ + RFM
Sbjct:  272 RYTLRYSGGMVPDVYHMFAKSKGVFSNVSSEKARAKLRLLYEVAPIGLIVECAGGMTTHEAHDG--------SVLDEVIDDLDRRLGVCFGSREEVEKYKRFM 366          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14653.3563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM01_ECTSI1.550e-6398.10Sedoheptulose-bisphosphatase n=2 Tax=Ectocarpus Ta... [more]
A0A7S3US16_HETAK4.420e-4166.06Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YXX8_9STRA5.020e-3864.60Sedoheptulose-bisphosphatase n=1 Tax=Tribonema min... [more]
A0A7S2UUN7_9STRA6.450e-3861.54Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8J1ZBM4_9DINO4.780e-3463.46Fructose-bisphosphatase n=1 Tax=Amoebophrya sp. A2... [more]
A0A8J1VZP9_9DINO4.880e-3461.54Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A482S7V3_9ARCH1.360e-3361.54Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S0C0C6_9STRA3.790e-3363.46Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
K8YYP4_NANGC2.650e-3160.58Sedoheptulose-bisphosphatase n=3 Tax=Monodopsidace... [more]
A0A7R9VKH4_9STRA5.180e-3161.17Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14653contigEcto-sp13_S_contig14653:2..812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score101.7
Seed ortholog evalue2e-19
Seed eggNOG ortholog159749.K0S2A1
Model size318
KEGG rclassRC00017,RC00918,RC01781
KEGG koko:K01100,ko:K01698
KEGG ReactionR00036,R01845
KEGG Pathwayko00710,ko00860,ko01100,ko01110,ko01120,ko01200,map00710,map00860,map01100,map01110,map01120,map01200
KEGG ModuleM00121,M00165,M00167
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Fructose-1-6-bisphosphatase, N-terminal domain
EggNOG OGs2XCFQ@2836,COG0158@1,KOG1458@2759
EC3.1.3.37,4.2.1.24
Cds size291
COG Functional cat.G
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462782.2893264-UTR-Ecto-sp13_S_contig14653:1..281681462782.2893264-UTR-Ecto-sp13_S_contig14653:1..28Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14653 2..28 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462782.3039365-CDS-Ecto-sp13_S_contig14653:28..1711681462782.3039365-CDS-Ecto-sp13_S_contig14653:28..171Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14653 29..171 +
1681462782.3143573-CDS-Ecto-sp13_S_contig14653:664..8121681462782.3143573-CDS-Ecto-sp13_S_contig14653:664..812Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14653 665..812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14653.3563.1prot_Ecto-sp13_S_contig14653.3563.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14653 29..812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14653.3563.1

>prot_Ecto-sp13_S_contig14653.3563.1 ID=prot_Ecto-sp13_S_contig14653.3563.1|Name=mRNA_Ecto-sp13_S_contig14653.3563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
MVPDVYHILIKSKGVFSNVSSAAAKAKLRLLYECAPIALLIEAAGGASVI
APSPGAASGGTPLSVLDVEIDNLDKRLGLCLGGKEEVDVFNRFMFG*
back to top

mRNA from alignment at Ecto-sp13_S_contig14653:2..812+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14653.3563.1 ID=mRNA_Ecto-sp13_S_contig14653.3563.1|Name=mRNA_Ecto-sp13_S_contig14653.3563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=811bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14653:2..812+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTACACGTTGAGATATACCGGGGGCATGGTGCCAGACGTGTACCACAT CCTGATCAAGAGCAAGGGTGTGTTCAGCAACGTCTCCAGCGCAGCGGCTA AGGCGAAGCTCCGGCTCCTGTACGAGTGCGCTCCGATCGCCCTTCTCATC GAGGCCGCCGGAGGAGCCAGGTGAAGGAGGAGCGTGTGCTACAGTAGTAT TTTTGTCGCAGGGTGTACAGTGTTGAAGCCTGGAGAAATCAGTTTCATAC CAACGGTGCCCGGTGCCTCCAACACCCGCCCGCCTCCCGCTTGTTTCGAT TGAGGCGCACTGCTGCTGTCGTTCCGGACGCTCGTTCACGATTTCTGGAA AGGCGGTTGGTCTGACGGGCGTAACTTCTTTTGTCCGTGCTGTGCGTAAC CGTAGCCTTCGGCAGAGGCGCTTCTTTTGTCATTGTTGAGGCCAATTTCC ATCCCGGTGAAAAGGATCACCTATCGCAGTCAAGCTTAGGCGCCTGCGTC TTGTCATTCGGAGATGACTTCATTCTCCATTCACAGCAGTTCTTTGGTGT TGTCTGCCGATGTTGCCCTGGCATCACGAGACGGCCTCTAGACAGATATT AACTCCCTCTTGCCCGTTCCGATGCGACGCACGCGGCGCTCTCTATTGTG TTACTTGTTTCAGCGTTATAGCCCCTTCCCCGGGGGCAGCATCGGGAGGG ACTCCGCTGTCGGTGCTGGATGTGGAGATCGACAACCTCGACAAGCGGCT AGGGCTCTGCTTAGGGGGGAAAGAAGAAGTGGATGTGTTTAATCGCTTTA TGTTCGGCTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14653:2..812+

>mRNA_Ecto-sp13_S_contig14653.3563.1 ID=mRNA_Ecto-sp13_S_contig14653.3563.1|Name=mRNA_Ecto-sp13_S_contig14653.3563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14653:2..812+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCCAGACGTGTACCACATCCTGATCAAGAGCAAGGGTGTGTTCAG
CAACGTCTCCAGCGCAGCGGCTAAGGCGAAGCTCCGGCTCCTGTACGAGT
GCGCTCCGATCGCCCTTCTCATCGAGGCCGCCGGAGGAGCCAGCGTTATA
GCCCCTTCCCCGGGGGCAGCATCGGGAGGGACTCCGCTGTCGGTGCTGGA
TGTGGAGATCGACAACCTCGACAAGCGGCTAGGGCTCTGCTTAGGGGGGA
AAGAAGAAGTGGATGTGTTTAATCGCTTTATGTTCGGCTAG
back to top