mRNA_Ecto-sp13_S_contig14652.3562.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14652.3562.1
Unique NamemRNA_Ecto-sp13_S_contig14652.3562.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14652.3562.1 vs. uniprot
Match: D7FY61_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY61_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 4.630e-86
Identity = 129/134 (96.27%), Postives = 133/134 (99.25%), Query Frame = 1
Query:    1 MELAAELSAARNAPGARQTAWMLNGIRTEVVVIPYADRTFVIVTQMKKLGNLLMATSDAAGGMMAGSGGRRYSVQVLLGRRDDPLLCLYARQMLEQMKSDKPLLLAVCLKEEGRDTKTFQEVINQILSLGGWGG 402
            MELAA++SAARNAPGARQTAWML+GIRTEVVVIPYADRTFVIVTQMKKLGNLLMATSDAAGGMMAGSGGRRYSVQVLLGRRDDPLLCLYARQMLEQMKSDKPLLLAVCLKEEGRDTKTFQEVINQ+LSLGGW G
Sbjct:    1 MELAADMSAARNAPGARQTAWMLSGIRTEVVVIPYADRTFVIVTQMKKLGNLLMATSDAAGGMMAGSGGRRYSVQVLLGRRDDPLLCLYARQMLEQMKSDKPLLLAVCLKEEGRDTKTFQEVINQVLSLGGWSG 134          
BLAST of mRNA_Ecto-sp13_S_contig14652.3562.1 vs. uniprot
Match: A0A835ZGZ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGZ8_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.630e-36
Identity = 65/114 (57.02%), Postives = 88/114 (77.19%), Query Frame = 1
Query:   49 RQTAWMLNGIRTEVVVIPYADRTFVIVTQMKKLGNLLMATSDAAGGMMAGSGGRRYSVQVLLGRRDDPLLCLYARQMLEQMKSDKPLLLAVCLKEEGRDTKTFQEVINQILSLG 390
            RQ A  L+GI TE+VV  ++DRT V VTQ++K+G +L+ TS+A+G      GGR ++V+ LLGRRDDPLL +YARQ+ EQM+ D PLLLA+ LKEEGRD+ TF  V+N++L+LG
Sbjct:    6 RQGALELHGITTEIVVQSFSDRTMVNVTQLEKMGTMLLVTSEASG-----MGGRSFNVKTLLGRRDDPLLLVYARQLAEQMRLDHPLLLAIALKEEGRDSATFAAVVNKVLALG 114          
BLAST of mRNA_Ecto-sp13_S_contig14652.3562.1 vs. uniprot
Match: A0A7S2V894_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V894_9STRA)

HSP 1 Score: 114 bits (285), Expect = 5.030e-30
Identity = 58/118 (49.15%), Postives = 85/118 (72.03%), Query Frame = 1
Query:   52 QTAWMLNGIRTEVVVIPYADRTFVIVTQMKKLGNLLMATSDAAGGMMAGSGGRR----YSVQVLLGRRDDPLLCLYARQMLEQMKS--DKPLLLAVCLKEEGRDTKTFQEVINQILSL 387
            Q+A ++NGI+TE++V+ +AD+ F+IVTQ+KK+G L+          +  S G R    Y   VLLGRRDDPLL +YARQ++E++ S  +KPLLL + LK EGRDT+TFQEV+N+++ +
Sbjct:   17 QSALVINGIKTEILVMYFADKIFIIVTQLKKIGTLVHVQPGNEATSVGASMGDRPLGIYDTSVLLGRRDDPLLLIYARQIMEKICSTLNKPLLLGIALKNEGRDTETFQEVLNELIKM 134          
BLAST of mRNA_Ecto-sp13_S_contig14652.3562.1 vs. uniprot
Match: A0A7S2B7E1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B7E1_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.010e-29
Identity = 57/113 (50.44%), Postives = 82/113 (72.57%), Query Frame = 1
Query:   49 RQTAWMLNGIRTEVVVIPYADRTFVIVTQMKKLGNLLMATSDAAGGMMAGSGGRRYSVQVLLGRRDDPLLCLYARQMLEQMKS---DKPLLLAVCLKEEGRDTKTFQEVINQI 378
            RQTA +++GI T++VV  +ADR FV VTQ++K+G +L A S+ +       G +R+ +  L+GRRDDPLL LYARQ++EQ+     DKPLLLA+ LK+EGR++ TFQ +IN +
Sbjct:   17 RQTAAIIDGIHTDIVVQSFADRVFVTVTQIQKIGTMLFAVSEDSS-----MGEKRFDISTLVGRRDDPLLTLYARQLIEQIAKTGCDKPLLLAISLKDEGRESSTFQAIINIV 124          
BLAST of mRNA_Ecto-sp13_S_contig14652.3562.1 vs. uniprot
Match: A0A7S2F3L5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F3L5_9STRA)

HSP 1 Score: 112 bits (280), Expect = 4.050e-29
Identity = 57/127 (44.88%), Postives = 85/127 (66.93%), Query Frame = 1
Query:   22 SAARNAPGARQTAWMLNGIRTEVVVIPYADRTFVIVTQMKKLGNLLMATSDAAGGMMAGSGGRRYSVQVLLGRRDDPLLCLYARQMLEQMK--SDKPLLLAVCLKEEGRDTKTFQEVINQILSLGGW 396
            SA ++   +RQTA  +NG+ T+++V  + DR FVI+TQ+KK+G L+ A ++         G R ++  VLLGRRDDPL+ +YARQM+EQ+   S  PLL++V +  EGRD +TF+ +IN +L L  W
Sbjct:   27 SAVKSCFRSRQTAMKINGVHTDIIVQVFQDRIFVIITQIKKIGTLVYAVAEETS-----MGSRTFTANVLLGRRDDPLVLIYARQMIEQISATSSLPLLMSVSMTPEGRDARTFETIINVVLKLKCW 148          
BLAST of mRNA_Ecto-sp13_S_contig14652.3562.1 vs. uniprot
Match: A0A7S1TQ84_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQ84_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.360e-22
Identity = 52/123 (42.28%), Postives = 75/123 (60.98%), Query Frame = 1
Query:   40 PGARQTAWMLNGIRTEVVVIPYADRTFVIVTQMKKLGNLLMATSDAAGGMMAGSGGRRYSVQVLLGRRDDPLLCLYARQMLEQMKS----DKPLLLAVCLKEEGRDTKTFQEVINQILSLGGW 396
            P  R+    + GI TE+VV  + D  FV++TQ+KKLG L+M   +        +G   +  +VLLG+RDDPLL LYARQ+ EQ+ +    D+ ++L++ LKE+GR    FQE IN +L L  W
Sbjct:   21 PQTRRKVVDIGGIETEIVVQGFQDAIFVVITQLKKLGTLIMTHIERGR-----TGKCLFDARVLLGKRDDPLLVLYARQIAEQISTRTTYDRNVVLSIALKEDGRGPAAFQETINHVLDLPVW 138          
BLAST of mRNA_Ecto-sp13_S_contig14652.3562.1 vs. uniprot
Match: A0A482SY11_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SY11_9ARCH)

HSP 1 Score: 86.3 bits (212), Expect = 2.810e-19
Identity = 47/99 (47.47%), Postives = 68/99 (68.69%), Query Frame = 1
Query:   91 VVIPYADRTFVIVTQMKKLGNLLMATSDAAGGMMAGSGGRRYSVQVLLGRRDDPLLCLYARQMLEQMK--SDKPLLLAVCLKEEGRDTKTFQEVINQIL 381
            V+I ++   FVI+TQ+ K+G++L A ++         GG R+ V+ +LGRRDDPLL LYARQ++E++   S K L+LAV LKEEGR  + FQ VIN+ +
Sbjct:   11 VLIVFSSNVFVIITQINKVGSMLKAWTEPKF-----DGGLRFMVENMLGRRDDPLLVLYARQLIERISIISPKQLILAVSLKEEGRGKEHFQNVINRTM 104          
BLAST of mRNA_Ecto-sp13_S_contig14652.3562.1 vs. uniprot
Match: A0A7S0CAB8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CAB8_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.350e-17
Identity = 50/123 (40.65%), Postives = 75/123 (60.98%), Query Frame = 1
Query:   64 MLNGIRTEVVVIPYADRTFVIVTQMKKLGNLL---MATSDAAGGMMAGSGGRRYSVQVLLGRRDDPLLCLYARQMLEQMKS-DK-----------PLLLAVCLKEEGRDTKTFQEVINQILSL 387
            ++N I TE+++  ++DRTFV++TQ+ K+GNLL   + TSD           + Y V  LLG R+D LL +YAR +LE++   DK           PLLL + LK+EGR T+ FQ +I Q++S+
Sbjct:   19 LVNQIHTEIMLQRFSDRTFVLITQIGKVGNLLSCSLETSDI-------DCSKTYHVSNLLGNREDSLLGVYARAILEKIVDLDKEQQRSSLTTTVPLLLGIALKKEGRGTEIFQSIIKQVISM 134          
BLAST of mRNA_Ecto-sp13_S_contig14652.3562.1 vs. uniprot
Match: A0A7S3WF90_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WF90_EMIHU)

HSP 1 Score: 80.1 bits (196), Expect = 2.500e-16
Identity = 49/134 (36.57%), Postives = 79/134 (58.96%), Query Frame = 1
Query:    1 MELAAELSAARNAPGARQTAWMLNGIRTEVVVIPYADRTFVIVTQMKKLGNLLMATSDAAGGMMAGSGGRRYSVQVLLGRRDDPLLCLYARQMLEQMKSDKP--LLLAVCLKEEGRDTKTFQEVINQILSLGGW 396
            +E+ A   A +  P ++     + G+ T ++   YA+R FV+V+Q + LG L+ AT ++A G+ +G G   YS +VLLGRRDD  L +YAR ++E +   +P  LLLA+ L +  R   TF EV+  + ++  W
Sbjct:   33 LEMIANGCAQQPGPLSKSAEVCIGGVSTRLIATAYANRIFVVVSQRENLGTLISATRESATGLASGPG--CYSTRVLLGRRDDEALEVYARTLVELINKSRPADLLLALNLLDSSR--ATFHEVMRALDAIKVW 162          
BLAST of mRNA_Ecto-sp13_S_contig14652.3562.1 vs. uniprot
Match: A0A4D9CRY9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRY9_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.860e-16
Identity = 41/109 (37.61%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   67 LNGIRTEVVVIPYADRTFVIVTQMKKLGNLLMATSDAAGGMMAGSGGRRYSVQVLLGRRDDPLLCLYARQMLEQMK--SDKPLLLAVCLKEEGRDTKTFQEVINQILSL 387
            +NG+ T+V +  ++DR F++++Q  + G ++ A +D +  +        + V VLLGRRDDPLL +YARQ++E +   S +PLLL++ L+E  RD  TF++V   +  L
Sbjct:   20 INGVLTDVAIFNFSDRIFLVISQNARFGTVISAKADDS--VARPGAAPSFDVSVLLGRRDDPLLLIYARQLVETVSRSSSRPLLLSISLRE--RDPSTFEQVAAWVRPL 124          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14652.3562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY61_ECTSI4.630e-8696.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZGZ8_9STRA1.630e-3657.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V894_9STRA5.030e-3049.15Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2B7E1_9STRA1.010e-2950.44Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2F3L5_9STRA4.050e-2944.88Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1TQ84_9STRA1.360e-2242.28Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A482SY11_9ARCH2.810e-1947.47Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S0CAB8_9STRA1.350e-1740.65Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S3WF90_EMIHU2.500e-1636.57Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A4D9CRY9_9STRA2.860e-1637.61Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14652contigEcto-sp13_S_contig14652:471..2544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score253.8
Seed ortholog evalue4.4e-65
Seed eggNOG ortholog2880.D7FY61
Preferred namePSMG3
Model size405
KEGG koko:K11877
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Proteasome assembly chaperone 3
EggNOG OGsKOG4828@1,KOG4828@2759
Ec32 ortholog descriptionProteasome assembly chaperone 3
Ec32 orthologEc-24_003680.1
Cds size405
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462782.2245383-CDS-Ecto-sp13_S_contig14652:470..5331681462782.2245383-CDS-Ecto-sp13_S_contig14652:470..533Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14652 471..533 +
1681462782.2394426-CDS-Ecto-sp13_S_contig14652:1436..15291681462782.2394426-CDS-Ecto-sp13_S_contig14652:1436..1529Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14652 1437..1529 +
1681462782.2488694-CDS-Ecto-sp13_S_contig14652:2087..22241681462782.2488694-CDS-Ecto-sp13_S_contig14652:2087..2224Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14652 2088..2224 +
1681462782.2611144-CDS-Ecto-sp13_S_contig14652:2432..25441681462782.2611144-CDS-Ecto-sp13_S_contig14652:2432..2544Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14652 2433..2544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14652.3562.1prot_Ecto-sp13_S_contig14652.3562.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14652 471..2544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14652.3562.1

>prot_Ecto-sp13_S_contig14652.3562.1 ID=prot_Ecto-sp13_S_contig14652.3562.1|Name=mRNA_Ecto-sp13_S_contig14652.3562.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
MELAAELSAARNAPGARQTAWMLNGIRTEVVVIPYADRTFVIVTQMKKLG
NLLMATSDAAGGMMAGSGGRRYSVQVLLGRRDDPLLCLYARQMLEQMKSD
KPLLLAVCLKEEGRDTKTFQEVINQILSLGGWGG*
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mRNA from alignment at Ecto-sp13_S_contig14652:471..2544+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14652.3562.1 ID=mRNA_Ecto-sp13_S_contig14652.3562.1|Name=mRNA_Ecto-sp13_S_contig14652.3562.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2074bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14652:471..2544+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCTGGCCGCGGAGTTGTCTGCTGCACGGAATGCGCCAGGTGCCCG GCAGACTGCATGGGTGAGCACAAACACGCGTCTACCCTTGCTGTGCTTTG CACTTTCAGACAATAGAGTGGAACAGGCGTTTTTTCAACTCTTGTCGGTA GACCCAAGCGTGTAACATGTCTGCTACTCGGTTGCGATCCATCATTTGTC CTCAAGGTACGTAGATTGACCACACGATACACGCACTGCTGCACTTTGAA TATTGGTCAAGTACAAATGTGTACGTCAACTTATTAGCTTTCGTGCTTGC AGGGTGTAGGCCATGGAAAGTACGCCGTTCTTTTATAAGTTTGTGTTCCT ACTCATCACCTTCAAATCATCGCGCGCACAGCGGTGTTTGGCACACAACA CGAAGAATGCTTGTACTGAGTACGTATCCTCTCCATCCAGCAGCTTCGCC GACATGCTGATCCTTATCACCAACCTTCCAACTTTCATCCAGCCGGGATC GCCCGAAAAGACTTTCCGCCGGCGAGAGCCGCCTGTACAGCAGTATGGGA TGCGTGGTATGCTCCGTCGCTTCGTCTGCGGAAGTGCTTGAAGCTGCGAT TGTTTAACGTTTAACGCGCAGCGTGTACGACTTCGGAAGAAACATACTCT CGGCCATTTCTATCCTCTCGATCATGCGGTAGTGTTCTATCGATTTCGTT ACGCTCGGCCACCACCACTGTGCACAGGTGTGGTTCACGGCGTCGGTCGG TTGCCTGCTTTTTATGTTACCGCTGTCTTTTGCGCATGATGAAATCCAAC GTGAAGCTGATTTCCGTGGGTCCTCGGAGCAGAGCTCTTCACAAACGTTG TTATGACTGTAGGGTAGAAGCTGCGAGAGACCAACCCACGAAAGGGATGG ATGACACCAAGAAACGCTCCCAACTCATCGCAAGCAGCCGCTGCGGCAAC CCCCATCTCCGAGCAGATGCTGAACGGGATCCGAACGGAGGTGGTGGTGA TCCCCTACGCCGACCGAACTTTCGTCATTGTCACGCAAATGAAGAAGCTC GGCAACTTGGTGAGTACTTGCTCGGCGGTCAGCCCGAGACATATCGTGCC GAAAGCATAGCGTTGTACGGAAAATGCGCCTTCGCTTGAGAACCTTCGAC CATGCCTGGCTTCTTTTTTCCCTGTGAGGGCTGCCCCTAGAGCCGAATCT GCGTTCACATGGGTTTCAATTGTTGGGGATGAATATCGGCTAATCGAATG TGCTCGAGCTCTTTCAGATTAGATTGTTTTCGTCGATTTCTCATCTGCCC ACCATTCGAAGTTTTGGCGCTAGATAGTTTGTTATTGTGGGGTCGTGTTT GACCTGTGGAACCAATCTCCACAACAAAGTTTTCGTTGCCACAGGATACC CGGAGTCGGAGTCAAGTTGAGGTTCGCTCTCTTCCCGCACAAACCCCAGA CGAAGCTACTGAGGGATTTTCCAAGGCAGTCTCATGCCGTCATCCGACGT AAATTCACACCTCGGTAGAATGCCTCGTTAGGGATTCGGAAACCTCCTGT CCTTTTCTCAACACTGGGACGCCTTGTTGACAGCGGGCGCCTCTTTGCTT GACCTGGCCTGCCGCAGTTGATGGCGACGTCGGATGCCGCCGGGGGTATG ATGGCGGGCAGCGGGGGGCGGAGATATAGCGTGCAAGTGCTGCTTGGAAG AAGGGACGACCCTCTTCTCTGCTTGTACGCGCGACAAATGCTGGAACAAA TGAAGTGAGATGGATCTGTGCACCTTGTTTTCGCGTTCGGAAAACGGACC GTTTTTGTGTGGACATGTGTGCTTGTGCTCCTCCTCGAGCGACACCCGGT GAATGCGACCGAACGGCGTTGAGAAATATAAATCCGCACTCTCGAGAGGG ACGCGTTGTTATCAGCTAAGGCATTCGAAACACCCCCCCCCCCCCCCCCC CTCTGACTGTAGGTCAGACAAGCCACTACTGCTGGCAGTATGTCTCAAAG AGGAGGGACGGGATACGAAGACGTTCCAAGAAGTGATCAACCAGATTCTC TCGCTCGGAGGATGGGGCGGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14652:471..2544+

>mRNA_Ecto-sp13_S_contig14652.3562.1 ID=mRNA_Ecto-sp13_S_contig14652.3562.1|Name=mRNA_Ecto-sp13_S_contig14652.3562.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14652:471..2544+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCTGGCCGCGGAGTTGTCTGCTGCACGGAATGCGCCAGGTGCCCG
GCAGACTGCATGGATGCTGAACGGGATCCGAACGGAGGTGGTGGTGATCC
CCTACGCCGACCGAACTTTCGTCATTGTCACGCAAATGAAGAAGCTCGGC
AACTTGTTGATGGCGACGTCGGATGCCGCCGGGGGTATGATGGCGGGCAG
CGGGGGGCGGAGATATAGCGTGCAAGTGCTGCTTGGAAGAAGGGACGACC
CTCTTCTCTGCTTGTACGCGCGACAAATGCTGGAACAAATGAAGTCAGAC
AAGCCACTACTGCTGGCAGTATGTCTCAAAGAGGAGGGACGGGATACGAA
GACGTTCCAAGAAGTGATCAACCAGATTCTCTCGCTCGGAGGATGGGGCG
GGTAA
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