mRNA_Ecto-sp13_S_contig14650.3560.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14650.3560.1
Unique NamemRNA_Ecto-sp13_S_contig14650.3560.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14650.3560.1 vs. uniprot
Match: D7FPC8_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPC8_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 4.610e-55
Identity = 101/110 (91.82%), Postives = 101/110 (91.82%), Query Frame = 1
Query:   16 KGSLLAFTFLHTLTLGNNRIGNLQASLGILRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEERISARRARVPKSWEASARGAHSDSVRLTQDLAAEE 345
            KGSLLAFTFLHTLTLG        ASLGILRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEER SARRARVPKSWEASARGAHSDSVRLTQDLAAEE
Sbjct:   43 KGSLLAFTFLHTLTLGXXXXXXXXASLGILRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEERSSARRARVPKSWEASARGAHSDSVRLTQDLAAEE 152          
BLAST of mRNA_Ecto-sp13_S_contig14650.3560.1 vs. uniprot
Match: F0YDM7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDM7_AURAN)

HSP 1 Score: 72.8 bits (177), Expect = 5.290e-14
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 1
Query:   13 EKGSLLAFTFLHTLTLGNNRIGNLQASLGILRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEERISARR 258
            E  S+     +  L L +NR+ +L+  + IL+ +R L+ L+L  NPLAEET YRL VIK +PWLE LD  KIT EER  A++
Sbjct:   56 EGSSVGRLLHVEELILNDNRLEDLKTHVDILQRLRRLKRLDLYNNPLAEETSYRLHVIKAMPWLEVLDQMKITPEERAKAKK 137          
BLAST of mRNA_Ecto-sp13_S_contig14650.3560.1 vs. uniprot
Match: A0A7S3QKS1_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QKS1_DUNTE)

HSP 1 Score: 73.2 bits (178), Expect = 8.690e-13
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:   16 KGSLLAFTFLHTLTLGNNRIGNLQASLGILRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEERISAR 255
            KG LL F FL  L L NN + NL   +  L   ++L+ L L+GNP  EE  YR++VI N+P L+ LD+H +T+ ER  AR
Sbjct:   93 KGCLLTFKFLEVLDLSNNLLRNLDKIIATLSKFKYLKNLNLTGNPCIEEPDYRMIVIYNIPSLQILDLHMVTDTERQKAR 172          
BLAST of mRNA_Ecto-sp13_S_contig14650.3560.1 vs. uniprot
Match: A0A1X0NZK7_9TRYP (Uncharacterized protein n=1 Tax=Trypanosoma theileri TaxID=67003 RepID=A0A1X0NZK7_9TRYP)

HSP 1 Score: 64.3 bits (155), Expect = 1.310e-9
Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = 1
Query:   43 LHTLTLGNNRIGNLQASLGILRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEERISA------RRARVPKS 276
            L  LTL +NR+GNL+A    L+ +R LR L+L GNPL +E GYRL +I   P +E LD   +  EER +A       R R P+S
Sbjct:  257 LEVLTLAHNRLGNLRAVSARLKPLRWLRELDLRGNPLCDEVGYRLFLIHEHPNIEILDRRAVRPEERKAAAEMYGSNRTRTPQS 340          
BLAST of mRNA_Ecto-sp13_S_contig14650.3560.1 vs. uniprot
Match: A0A3R7LAG9_9TRYP (Putative leucine-rich repeat-containing protein 72-like n=1 Tax=Trypanosoma conorhini TaxID=83891 RepID=A0A3R7LAG9_9TRYP)

HSP 1 Score: 62.0 bits (149), Expect = 8.400e-9
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   43 LHTLTLGNNRIGNLQASLGILRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEERISA 252
            L  L L +NR+ NL A    L+L+R LR L+L GNPL +E GYRL +I   P LE LD   + +EER  A
Sbjct:  211 LEVLFLAHNRLSNLSAVSAQLKLLRCLRELDLRGNPLCDEVGYRLFLIHEHPHLEVLDRRVVRDEERKEA 280          
BLAST of mRNA_Ecto-sp13_S_contig14650.3560.1 vs. uniprot
Match: UPI0004F499B1 (putative leucine-rich repeat-containing protein 72-like n=1 Tax=Trypanosoma grayi TaxID=71804 RepID=UPI0004F499B1)

HSP 1 Score: 60.8 bits (146), Expect = 2.110e-8
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 1
Query:   43 LHTLTLGNNRIGNLQASLGILRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEERISA 252
            L  L L NNR+ NL A    L+ +R LR L+L GNPL +E GYRL +I  LP LE LD   +  +ER  A
Sbjct:  189 LEVLALANNRLSNLTAVSTQLKPLRCLRELDLRGNPLCDEVGYRLFLIYELPQLEVLDRRAVRYDERKEA 258          
BLAST of mRNA_Ecto-sp13_S_contig14650.3560.1 vs. uniprot
Match: K2N8P0_TRYCR (Uncharacterized protein n=1 Tax=Trypanosoma cruzi marinkellei TaxID=85056 RepID=K2N8P0_TRYCR)

HSP 1 Score: 58.9 bits (141), Expect = 1.010e-7
Identity = 33/70 (47.14%), Postives = 42/70 (60.00%), Query Frame = 1
Query:   43 LHTLTLGNNRIGNLQASLGILRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEERISA 252
            L  L L +NR+ NL A    LR ++ LR L+L GNPL +E GYRL +I   P LE LD   + +EER  A
Sbjct:  199 LEVLFLAHNRLSNLNAVSAQLRPLKCLRELDLRGNPLCDEEGYRLFLIHEHPHLEVLDRRVVRDEERKEA 268          
BLAST of mRNA_Ecto-sp13_S_contig14650.3560.1 vs. uniprot
Match: A0A3R7MEW6_TRYRA (Putative leucine-rich repeat-containing protein 72-like n=1 Tax=Trypanosoma rangeli TaxID=5698 RepID=A0A3R7MEW6_TRYRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.760e-7
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 1
Query:   43 LHTLTLGNNRIGNLQASLGILRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEERISA 252
            L  L L +NR+ +L A    L+ +R LR L+L GNPL +E GYRL +I   P LE LD   + +EER  A
Sbjct:  198 LEVLFLAHNRLSDLSAVSAQLKPLRCLRELDLRGNPLCDEVGYRLFLIYEHPHLEVLDRRVVRDEERKEA 267          
BLAST of mRNA_Ecto-sp13_S_contig14650.3560.1 vs. uniprot
Match: A0A0N1IMK0_LEPSE (Uncharacterized protein n=1 Tax=Leptomonas seymouri TaxID=5684 RepID=A0A0N1IMK0_LEPSE)

HSP 1 Score: 56.2 bits (134), Expect = 8.960e-7
Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   43 LHTLTLGNNRIGNLQASLGILRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEERISA 252
            L  L+L +N + +L   +  LR +RHLRYL+L GNP+ +E  YR   I  LP +E LD   +T++ER  A
Sbjct:  184 LEHLSLAHNELTDLDCIMQPLRRLRHLRYLDLRGNPIVDEPSYRQRCIVALPQVEVLDGLTVTQDERRDA 253          
BLAST of mRNA_Ecto-sp13_S_contig14650.3560.1 vs. uniprot
Match: H2YA28_CIOSA (Uncharacterized protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2YA28_CIOSA)

HSP 1 Score: 55.1 bits (131), Expect = 1.460e-6
Identity = 33/85 (38.82%), Postives = 46/85 (54.12%), Query Frame = 1
Query:   19 GSLLAFTFLHTLTLGNNRIGNLQASLGILRLMRHLRYLELSGNPLAEETGYRLLVIKNLPWLETLDMHKITEEERISARRARVPK 273
            G L    +L  L L  N++ NL A L  +  +  LR L L  NP+A E+GYRLLVI +LP +  LD   +T  ER  ++    P+
Sbjct:   88 GCLSHLRYLQVLMLQKNQLVNLNAVLHEISPLHALRVLNLFDNPVAHESGYRLLVIHSLPSVALLDREAVTSNERKRSKAIHEPE 172          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14650.3560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FPC8_ECTSI4.610e-5591.82Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
F0YDM7_AURAN5.290e-1447.56Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S3QKS1_DUNTE8.690e-1346.25Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A1X0NZK7_9TRYP1.310e-945.24Uncharacterized protein n=1 Tax=Trypanosoma theile... [more]
A0A3R7LAG9_9TRYP8.400e-948.57Putative leucine-rich repeat-containing protein 72... [more]
UPI0004F499B12.110e-848.57putative leucine-rich repeat-containing protein 72... [more]
K2N8P0_TRYCR1.010e-747.14Uncharacterized protein n=1 Tax=Trypanosoma cruzi ... [more]
A0A3R7MEW6_TRYRA4.760e-745.71Putative leucine-rich repeat-containing protein 72... [more]
A0A0N1IMK0_LEPSE8.960e-742.86Uncharacterized protein n=1 Tax=Leptomonas seymour... [more]
H2YA28_CIOSA1.460e-638.82Uncharacterized protein n=1 Tax=Ciona savignyi Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14650contigEcto-sp13_S_contig14650:1737..2756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score194.1
Seed ortholog evalue3.6e-47
Seed eggNOG ortholog2880.D7FPC8
Preferred nameLRRC72
Model size349
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.U2 snRNA binding
EggNOG OGsCOG4886@1,KOG1644@2759
Cds size348
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462782.0991447-CDS-Ecto-sp13_S_contig14650:1736..18231681462782.0991447-CDS-Ecto-sp13_S_contig14650:1736..1823Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14650 1737..1823 +
1681462782.1117983-CDS-Ecto-sp13_S_contig14650:2163..23011681462782.1117983-CDS-Ecto-sp13_S_contig14650:2163..2301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14650 2164..2301 +
1681462782.1227934-CDS-Ecto-sp13_S_contig14650:2633..27561681462782.1227934-CDS-Ecto-sp13_S_contig14650:2633..2756Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14650 2634..2756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14650.3560.1prot_Ecto-sp13_S_contig14650.3560.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14650 1737..2756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14650.3560.1

>prot_Ecto-sp13_S_contig14650.3560.1 ID=prot_Ecto-sp13_S_contig14650.3560.1|Name=mRNA_Ecto-sp13_S_contig14650.3560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
MVRYEKGSLLAFTFLHTLTLGNNRIGNLQASLGILRLMRHLRYLELSGNP
LAEETGYRLLVIKNLPWLETLDMHKITEEERISARRARVPKSWEASARGA
HSDSVRLTQDLAAEEA
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mRNA from alignment at Ecto-sp13_S_contig14650:1737..2756+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14650.3560.1 ID=mRNA_Ecto-sp13_S_contig14650.3560.1|Name=mRNA_Ecto-sp13_S_contig14650.3560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1020bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14650:1737..2756+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCGGTACGAAAAGGGATCCCTGCTAGCGTTCACCTTCTTGCATAC GCTAACGCTGGGGAACAACCGCATCGGCAATCTCCAGGTGAAGGCACATG ATATCTCGCGCCACTTTAATGCTGGCTTTTGTATTTCCGTGCGAGACCCC TCTCATTGGCATGCAGCAACTTGACGAGAAATGTAGAGCGCTTATCCACT GCTACAGGTGGGGCTCTCGGTGTATTTGCGCCGCGTCGTGCAACGAGTAA ACACTACATGTCTCTCCACATCCTCGTAGGACCGTTTAACACATTCCTTC ACAAACCACAACGCATGGGTGACGATTGTTTTAGCACAGGTATATGCCAT TACGCACGTCGTCTGTGAAATCTTCCGGCGTTTTTGGCGTTCCCGTCAAT CGAACATCCGTCTATTTCAACCACCAGGCAAGCCTTGGAATCTTGCGGCT CATGCGACATCTGCGCTATCTAGAGCTCTCCGGCAACCCCCTCGCGGAAG AAACCGGGTACCGCCTGCTTGTCATAAAAAATCTTCCCTGGTTGGAAACG TTGGATATGCACAAGGTATGGAACAGGTGCACTACTCATGGCCATCTTAA TGTCTTAGAACCGATGTTCATGCCCTGGGTAGAAGTCTCCATGCGATTTC GTGTCTTGCGTGTGTACATTTCGGGAGATCGGTGCAATCGATATTGAAGA CTGATGTGAGCCTTAAAACGTTGTCGTGGCATCAAGAACGACATAGTGTA ATAGGCAAAGCCGGGTGTCGGTGATACTGCTGCCCTCGACCCCCGTCTTT GGCCGTCTATCCGACGATGTTGGTTTACCGGGGTAGTTAAATCCCCACTT CCGCTGCCCTACCGTTTACTATGTTCATTCTTCATCGGAACTGGCAGATA ACCGAAGAGGAGAGAATCAGCGCTCGCCGAGCGCGGGTTCCCAAAAGCTG GGAAGCGTCCGCCCGCGGTGCTCACAGCGACAGCGTGCGGTTGACCCAGG ATCTAGCGGCAGAGGAGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14650:1737..2756+

>mRNA_Ecto-sp13_S_contig14650.3560.1 ID=mRNA_Ecto-sp13_S_contig14650.3560.1|Name=mRNA_Ecto-sp13_S_contig14650.3560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14650:1737..2756+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCGGTACGAAAAGGGATCCCTGCTAGCGTTCACCTTCTTGCATAC
GCTAACGCTGGGGAACAACCGCATCGGCAATCTCCAGGCAAGCCTTGGAA
TCTTGCGGCTCATGCGACATCTGCGCTATCTAGAGCTCTCCGGCAACCCC
CTCGCGGAAGAAACCGGGTACCGCCTGCTTGTCATAAAAAATCTTCCCTG
GTTGGAAACGTTGGATATGCACAAGATAACCGAAGAGGAGAGAATCAGCG
CTCGCCGAGCGCGGGTTCCCAAAAGCTGGGAAGCGTCCGCCCGCGGTGCT
CACAGCGACAGCGTGCGGTTGACCCAGGATCTAGCGGCAGAGGAGGCG
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