mRNA_Ecto-sp13_S_contig14645.3559.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14645.3559.1
Unique NamemRNA_Ecto-sp13_S_contig14645.3559.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14645.3559.1 vs. uniprot
Match: A0A6H5L9K6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9K6_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 4.970e-30
Identity = 92/110 (83.64%), Postives = 92/110 (83.64%), Query Frame = -2 
Query:    3 EIDMEGLVEVAGEPGARLLVAAGLRTLGQLADRDEEDLARQLAALQQQXXXXXXXXRDAGEGSTAGEGAAADGXXXXXXXSDS-GEKARVTAEEVSEWVQGARGEELDEI 329
            EIDMEGLVEVAGEPGA LLVAAGLRTLGQLADRDEEDLARQLAALQQ  XXXXXX RDAGEGS          XXXXXXX    GEKARVTAEEVSEWVQGARGEELDEI
Sbjct:  655 EIDMEGLVEVAGEPGAGLLVAAGLRTLGQLADRDEEDLARQLAALQQ--XXXXXXERDAGEGSAXXXXXXXXXXXXXXXXXXXXGEKARVTAEEVSEWVQGARGEELDEI 762
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BLAST of mRNA_Ecto-sp13_S_contig14645.3559.1 vs. uniprot
Match: D8LTC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTC8_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 6.460e-25
Identity = 86/109 (78.90%), Postives = 86/109 (78.90%), Query Frame = -2 
Query:    3 EIDMEGLVEVAGEPGARLLVAAGLRTLGQLADRDEEDLARQLAALQQQXXXXXXXXRDAGEGSTAGEGAAADGXXXXXXXSDSGEKARVTAEEVSEWVQGARGEELDEI 329
            EIDMEGLVEVAGEPGA LLVAAGLRTLGQLADRDEEDLARQLAALQQ XXXXXXXX                 XXXXXXX    EKARVTAEEVSEWVQGARGEELDEI
Sbjct:  543 EIDMEGLVEVAGEPGAGLLVAAGLRTLGQLADRDEEDLARQLAALQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--EKARVTAEEVSEWVQGARGEELDEI 649
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14645.3559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L9K6_9PHAE4.970e-3083.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTC8_ECTSI6.460e-2578.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14645contigEcto-sp13_S_contig14645:1840..2256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size419
Hectar predicted targeting categoryother localisation
Exons1
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462782.0593972-CDS-Ecto-sp13_S_contig14645:1839..22561681462782.0593972-CDS-Ecto-sp13_S_contig14645:1839..2256Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14645 1840..2256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14645.3559.1prot_Ecto-sp13_S_contig14645.3559.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14645 1840..2256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14645.3559.1

>prot_Ecto-sp13_S_contig14645.3559.1 ID=prot_Ecto-sp13_S_contig14645.3559.1|Name=mRNA_Ecto-sp13_S_contig14645.3559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp
MISSSSSPLAPCTHSDTSSAVTLAFSPLSLPPLPPALPSAAAPSPAVDPS
PASLSCCCCCCCCCCRAASCRARSSSSRSASCPSVLSPAATSSLAPGSPA
TSTKPSMSISSSSSFSFTPSPFSSSMAGTTGATAAAADP
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mRNA from alignment at Ecto-sp13_S_contig14645:1840..2256+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14645.3559.1 ID=mRNA_Ecto-sp13_S_contig14645.3559.1|Name=mRNA_Ecto-sp13_S_contig14645.3559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14645:1840..2256+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCTCGTCCAGCTCCTCCCCCCTCGCTCCCTGCACCCACTCGGACAC
CTCCTCCGCGGTGACCCTGGCCTTCTCTCCGCTGTCACTGCCGCCGCTGC
CACCCGCGCTTCCATCTGCCGCCGCTCCTTCCCCCGCAGTAGACCCTTCG
CCGGCATCTCTCTCTTGCTGCTGCTGCTGCTGCTGCTGTTGCTGCAGGGC
GGCCAGTTGTCGCGCGAGATCCTCCTCGTCGCGATCGGCAAGCTGCCCGA
GCGTCCTCAGCCCGGCTGCGACAAGCAGCCTGGCCCCGGGCTCTCCCGCT
ACCTCCACCAAACCCTCCATGTCAATCTCTTCCTCCTCCTCCTTCTCCTT
CACACCATCCCCATTTTCTTCTTCCATGGCAGGCACAACCGGAGCTACCG
CTGCCGCCGCCGACCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14645:1840..2256+

>mRNA_Ecto-sp13_S_contig14645.3559.1 ID=mRNA_Ecto-sp13_S_contig14645.3559.1|Name=mRNA_Ecto-sp13_S_contig14645.3559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14645:1840..2256+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCTCGTCCAGCTCCTCCCCCCTCGCTCCCTGCACCCACTCGGACAC
CTCCTCCGCGGTGACCCTGGCCTTCTCTCCGCTGTCACTGCCGCCGCTGC
CACCCGCGCTTCCATCTGCCGCCGCTCCTTCCCCCGCAGTAGACCCTTCG
CCGGCATCTCTCTCTTGCTGCTGCTGCTGCTGCTGCTGTTGCTGCAGGGC
GGCCAGTTGTCGCGCGAGATCCTCCTCGTCGCGATCGGCAAGCTGCCCGA
GCGTCCTCAGCCCGGCTGCGACAAGCAGCCTGGCCCCGGGCTCTCCCGCT
ACCTCCACCAAACCCTCCATGTCAATCTCTTCCTCCTCCTCCTTCTCCTT
CACACCATCCCCATTTTCTTCTTCCATGGCAGGCACAACCGGAGCTACCG
CTGCCGCCGCCGACCCC
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