mRNA_Ecto-sp13_S_contig14637.3556.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14637.3556.1
Unique NamemRNA_Ecto-sp13_S_contig14637.3556.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14637.3556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14637contigEcto-sp13_S_contig14637:14..3044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size203
Hectar predicted targeting categoryother localisation
Exons3
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462781.7825785-CDS-Ecto-sp13_S_contig14637:15..911681462781.7825785-CDS-Ecto-sp13_S_contig14637:15..91Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14637 16..91 -
1681462781.7915926-CDS-Ecto-sp13_S_contig14637:2378..24241681462781.7915926-CDS-Ecto-sp13_S_contig14637:2378..2424Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14637 2379..2424 -
1681462781.8000247-CDS-Ecto-sp13_S_contig14637:2965..30441681462781.8000247-CDS-Ecto-sp13_S_contig14637:2965..3044Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14637 2966..3044 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14637.3556.1prot_Ecto-sp13_S_contig14637.3556.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14637 16..3044 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14637.3556.1

>prot_Ecto-sp13_S_contig14637.3556.1 ID=prot_Ecto-sp13_S_contig14637.3556.1|Name=mRNA_Ecto-sp13_S_contig14637.3556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
TDSIWSPLGTPPTSVFDQTVDSSPVPDVDHGQPSSPGACQRRAIQGSRQS
ERHQACEASSKCEIRHT
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mRNA from alignment at Ecto-sp13_S_contig14637:14..3044-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14637.3556.1 ID=mRNA_Ecto-sp13_S_contig14637.3556.1|Name=mRNA_Ecto-sp13_S_contig14637.3556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3031bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14637:14..3044- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGATTCGATCTGGTCGCCCCTGGGAACGCCACCCACCTCTGTGTTTGA
TCAAACAGTTGACAGCAGTCCCGTCCCCGGTGAGTTTGCGATGACGTACG
TGCAGCAATTGTGGAGAGGCGAACTGAGCATTCTTTCCGCTAGTTTGAAC
TTGGATGAACCAGCTGGGTTTATTGGTTCGGGTGAAGCCGTCAGGGTCTG
TCACAGAGTCATAGACAGCGGTGGTAGCACATCCCAACGAACGTCTATAG
AGCCAGCGGTTGCCGGTAGGTCGTCCGATCCTAAGTAGCGGTGGTCTTTT
TTTTTACGATGATAATCTGTAGACCTTTTGAGCCTCGACTGTCTCTCGGA
TTTGTGCCTCTTCGTCCCCGTCTTTCTTAATGGTATTCTCCCGCACTCGA
TGTTTTCTTCGCGAGACGAATGAAGGCACTTTCGCTTACCCCTCACCGTC
TGGAATGCGTGCCCTTTCTATGTATCTGCGCTTAGGCTATATCTTGGACT
GCATTTGTTGCATGGTGGAGTTCGTCCTGTTTGCTTGGTCGATCCGCCGA
AACGAAGGAAAAAATCGTTGTTTTTGCGTCCAGCTGGCTTTTTACCGTGA
CCCCATCTATTTGTTGGCAGACGTGGACCATGGCCAGCCTTCTTCGCCGG
GTGCATGCCAAAGGAGGTGAGACAGGCTTTCCAAAGCCAAAGATGTGATA
CATTTACGTGGTATCATATGCGTATGTCCTCGCTGCGGTTGTGTTCAAGC
GTTGGGAGTATAAGCCGGGCGGGCGGTGGTGATTTCCTCTGGGAAACTTT
ACCATCACAACGGGCCGGTTGACAGGTTTGTTGAGGCGAGAACGATCTTC
ATACTTTTCTTACTGCTGTAGTCTACCCATGTGTACCAAGAAAACACGCG
GCCCTGGTGTAGCTTGTTGCTCGGGTAGGGGTCAGCCGCGCGCGCGGGAG
CCATATGTCTGTCCAGGATATTGCACACCCCACAGCAAGAGCAGTGTGGT
TAGTTGCCTGATGTTTTCTCACGGTGCATGCGGAGGAATCAGCAGTAGCC
CAAAATACTTGATGTGACAGGCAGTTGCCGCCAGCTGTCTGCCGCTGAGC
CACGAGTAGACAGATGGTTTGCATACGTCTACACACCGTGCGCCTTGTCA
TCTCCAGCAATGTACAGTGTGAAGCATCGGGAAACCCACGCTTCCGAGCC
ACGACTATCAACTGTCTCTGTCTTCTGTTCGACACTGCATGGCCTAAATA
TCAGCTCTGTGCTCGGAGGGGGAGAGAAACGGAAGGACTTACGTGATGTG
ATGAACACATGAACACAGTGGTGGGGTCGCGTGTGTGGTGGGGTGTGCTG
CTTGCTGTGTGGTGTGTCAGCTCATACGCGAAACAAAGACCGCGTGCACT
CCTTTACACCTCGTGGAGTCCGTTATTTATTTGTGTAGGGCGAAGGGTGC
GTTGTTTACGCTTGTGCACCGTATTGTACACAAGAATCGGAGAAAAAGGG
CATGTTTTCGCAAATCTAAACTTCATCAACGGCTGTAAAATTACTGTTGG
TTTCAAGACGCTTCTTTGTGGCAACGAGTCGAATCGGTAATGAATGACTC
GGTGATGAGCATGAACGACAAAAAAGAAATAAACGTTCCAGGCTGCGTGG
CAATGGAAGGGAACGAACAGGCTCGGGTGGATACGAATAGAAGAGCCTGT
TCGCCGGGACTCATCGTAAGGTTTTCGGGCACGCTCAAAGGAACGGTTGC
AAGGAACGGGCCGGGACCCTGCACGTATCATTATTTAACTTCATCAACAC
GACCCAACGAATCCATCTCTATCGAAGAAAATAGAGTCTTACATGTGTAG
GATAGATAAGCATTGAATCCATAGCATCAGCGAGAAATTCTGTTTGTCCA
CGATTTCCCGAGCAGCACACAGTGATACCTCCCCGTGGGTAACAGGGTCA
ACAAGACAGTGTGGTGGCCATCTTGTGCATCTATCTGTTTGTTATGCTGG
GAAGGTGTAGAGGGAAGAGGTTGGGAAGTTGGTTCGTATCATTTGCAGAC
CCACAGCCCATGACCATGACAGCTCGCTCCAACAATCGGTACCTACGGGA
GTGCCGCATGTCGGGTTGTGAGTGTTCACAGCACGAAAACTATTGAGTTG
TTCGTGTAGAACAGACGGAGTCTACTGTACTGGCTACGTGTATTCCCCAT
TTTCGTTTGGTGGAAGATTTCACGGGAGCAACTAGCAGCCTCTACGCGGA
AACCCGTGCAAGTTTTGGAAGATTCCATCATCTCCACGGAGGAAGTACTT
CCAGGAGGTTCATTCTTAACTGCAAGGACTTCGCGGTGGAGTTGCCGCCA
AACATGTACAACATCAAATCTGACAGCTTGCGTGGGAGTCCATTCGTTGA
GCTCCCATCAAAATTCGAAGTAGGTGATTTGTCTCCGAACGCCCAACCTG
TTGCAAGCATTGGTTTCCAAAGCCATGAAGAGGGACCCATGTACATCGTT
TATCGCTACCAGATTACTCTCCTCCGCAGCCCCTGTGCACGCAGTCCACT
GTCTCCTTCGAAAAGACTTCTTCGGTCTACGTAGTGGCACGTGACATGCC
ACAAGAACAACCTTGGGAGCTTTTGGTTGTTCAAGTGCCAGAAGTCACAC
GCGAAGTATGACCTCCCCTATCGCGGCGACGACACTTGTGTCATCGTGTT
GTCAACCCCTCGAGGCATGCTTCCGTACAGCCTGCAGGTTATTTCATGGG
AAATAAAGGCTGCGGTACGTTCATCGCCATGTAATTCCCCAGCAGTCACT
GGTTCGTCCGCCTCTGGCCTTCGAAAATCTGCTCTCACCAGGTGTGCTTG
TGAAATTTGAGTTGGCGCCAAGCCTACTGCGGTGGCTTCTCGGGTTTGTT
TGGGTTGAGAGCGTGCTAATGGCTTGCATGGGGTCCGCTTCCTCTCCGTC
AAGAGCTATTCAAGGATCGCGACAATCGGAACGCCACCAAGCCTGCGAAG
CCTCTTCGAAGTGCGAGATCCGACACACGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14637:14..3044-

>mRNA_Ecto-sp13_S_contig14637.3556.1 ID=mRNA_Ecto-sp13_S_contig14637.3556.1|Name=mRNA_Ecto-sp13_S_contig14637.3556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14637:14..3044- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGATTCGATCTGGTCGCCCCTGGGAACGCCACCCACCTCTGTGTTTGA
TCAAACAGTTGACAGCAGTCCCGTCCCCGACGTGGACCATGGCCAGCCTT
CTTCGCCGGGTGCATGCCAAAGGAGAGCTATTCAAGGATCGCGACAATCG
GAACGCCACCAAGCCTGCGAAGCCTCTTCGAAGTGCGAGATCCGACACAC
G
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