mRNA_Ecto-sp13_S_contig14624.3551.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14624.3551.1
Unique NamemRNA_Ecto-sp13_S_contig14624.3551.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14624.3551.1 vs. uniprot
Match: D8LU94_ECTSI (Coronin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU94_ECTSI)

HSP 1 Score: 405 bits (1040), Expect = 2.070e-138
Identity = 234/236 (99.15%), Postives = 235/236 (99.58%), Query Frame = 1 
Query:    1 AVLPYNKPGRFVRGGPLVSGHTASVLDFDFNPFHEQLVASCSEDCTVKVWGIPEDGFAETETEALIDLQGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIEAGMNINTLSAHEQLIQDIVWDFYGNTYATSCKDKSLRIIDARSPQVAQSVAMAHEGARSSKITYLGTKEKLVSVGFTKQSQRQFKVWDPRNLSKEIKKIEIDQAAGVILPFYDDESSLLYLAGKGDGNIRYYE 708
            AVLPYNKPGRFVRGGPLVSGHTASVLDFDFNPFHEQLVASCSEDCTVKVWGIPEDGF ETETEALIDLQGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIEAGMNINTLSAHEQLIQDIVWDFYGNTYATSCKDKSLRIIDARSPQVAQSVAMAHEGARSSKITYLGTKEKLVSVGFTKQSQRQFKVWDPRNLSKEIKK+EIDQAAGVILPFYDDESSLLYLAGKGDGNIRYYE
Sbjct:   58 AVLPYNKPGRFVRGGPLVSGHTASVLDFDFNPFHEQLVASCSEDCTVKVWGIPEDGFTETETEALIDLQGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIEAGMNINTLSAHEQLIQDIVWDFYGNTYATSCKDKSLRIIDARSPQVAQSVAMAHEGARSSKITYLGTKEKLVSVGFTKQSQRQFKVWDPRNLSKEIKKMEIDQAAGVILPFYDDESSLLYLAGKGDGNIRYYE 293
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BLAST of mRNA_Ecto-sp13_S_contig14624.3551.1 vs. uniprot
Match: A0A835YLY0_9STRA (Coronin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY0_9STRA)

HSP 1 Score: 309 bits (791), Expect = 1.220e-100
Identity = 174/235 (74.04%), Postives = 205/235 (87.23%), Query Frame = 1 
Query:    4 VLPYNKPGRFVRGGPLVSGHTASVLDFDFNPFHEQLVASCSEDCTVKVWGIPEDGFAETETEALIDLQGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIEAGMNINTLSAHEQLIQDIVWDFYGNTYATSCKDKSLRIIDARSPQVAQSVAMAHEGARSSKITYLGTKEKLVSVGFTKQSQRQFKVWDPRNLSKEIKKIEIDQAAGVILPFYDDESSLLYLAGKGDGNIRYYE 708
            +LPY+KPGRF R  P+++GHT +VLDFDFNPFHEQLVASCSEDCT+K+WGIP+ G  ET TE+L+DL GH XXXXXXXXXXXXXXXXXXXXXXXXXXXXDIE    +N L  HE LIQDIVWD+ G  YAT+CKDKS+RI DAR+  V+  +  AHEGARS+K+TYLG+K+KL+SVGFT+QSQRQFK+WDPRN S EIKK++IDQAAGVI+PFYDD+++LLYLAGKGDGNIRYYE
Sbjct:   59 ILPYDKPGRFERNVPVIAGHTGAVLDFDFNPFHEQLVASCSEDCTIKIWGIPDGGVTETITESLVDLGGHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIEKACEVNCLGGHEGLIQDIVWDYMGANYATTCKDKSMRICDARAATVSTVIPNAHEGARSTKLTYLGSKDKLLSVGFTRQSQRQFKIWDPRNTSAEIKKVDIDQAAGVIMPFYDDDTNLLYLAGKGDGNIRYYE 293
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BLAST of mRNA_Ecto-sp13_S_contig14624.3551.1 vs. uniprot
Match: A0A836CNW2_9STRA (Coronin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNW2_9STRA)

HSP 1 Score: 299 bits (765), Expect = 1.490e-96
Identity = 174/235 (74.04%), Postives = 203/235 (86.38%), Query Frame = 1 
Query:    4 VLPYNKPGRFVRGGPLVSGHTASVLDFDFNPFHEQLVASCSEDCTVKVWGIPEDGFAETETEALIDLQGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIEAGMNINTLSAHEQLIQDIVWDFYGNTYATSCKDKSLRIIDARSPQVAQSVAMAHEGARSSKITYLGTKEKLVSVGFTKQSQRQFKVWDPRNLSKEIKKIEIDQAAGVILPFYDDESSLLYLAGKGDGNIRYYE 708
            +L Y KPGRF R  PL++GHT++VLDFDFNPF E LVASCSEDCT+KVWGIPE G  ET TE L+DL   XXXXXXXXXXXXXXXXXXXXXXXXXXXXX IE  + INTL+AH+QLIQDIVWD+ G  YAT+CKDKS+RI DAR+ +V+  +  AHEGARS+K+TYLG K+KL+SVGFT+QSQRQFK+WDPRN + EIK+I+IDQAAGVI+PFYDD++ LLYLAGKGDGNIRYYE
Sbjct:   59 ILDYTKPGRFERNVPLIAGHTSAVLDFDFNPFFENLVASCSEDCTIKVWGIPEGGLTETITEPLVDLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEKSVEINTLAAHDQLIQDIVWDYTGANYATTCKDKSVRICDARAAKVSTVIPNAHEGARSAKLTYLGAKDKLLSVGFTRQSQRQFKIWDPRNTAAEIKRIDIDQAAGVIMPFYDDDTQLLYLAGKGDGNIRYYE 293
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BLAST of mRNA_Ecto-sp13_S_contig14624.3551.1 vs. uniprot
Match: A0A7S3H1X9_9STRA (Coronin n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H1X9_9STRA)

HSP 1 Score: 268 bits (684), Expect = 1.180e-84
Identity = 160/243 (65.84%), Postives = 200/243 (82.30%), Query Frame = 1 
Query:    4 VLPYNKPGRFVRGGPLVSGHTASVLDFDFNPFHEQLVASCSEDCTVKVWGIPEDGFAETETEALIDLQGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIEAGMNINTLS-AHEQLIQDIVWDFYGNTYATSCKDKSLRIIDARSPQVAQSVAMAHEGARSSKITYLGTKEKLVSVGFTKQSQRQFKVWDPRNLSKEIKKIEIDQAAGVILPFYDDESSLLYLAGKGDGNIRYYEVRPCLPY 729
            V+  +KPGR +   P++SGH+A+VLDF+FNPF++Q++A+ SED TVKVWGIPE G     T  L+DL   XXXXXXXXXXXXXXXXXXXXXXXXXXXXX    G+ IN+LS AH+QLIQDIVWD+ G  YATSCKDK++RIIDARS  V+ ++  AHEGA+S K+TY GT  KL+SVGFT+QSQRQFK+WDPRN +KE++K++IDQAAGVI+PFYD +++LLYLAGKGDGN+RYYE+    P+
Sbjct:   59 VINLDKPGRMLTDQPVISGHSAAVLDFEFNPFNDQIIATGSEDTTVKVWGIPEGGLTANITTPLVDLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGVEINSLSSAHDQLIQDIVWDYTGTEYATSCKDKNIRIIDARSAAVSSTIEQAHEGAKSMKLTYAGTTGKLISVGFTRQSQRQFKIWDPRNTAKELEKVDIDQAAGVIMPFYDADTNLLYLAGKGDGNVRYYEISSEAPH 301
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BLAST of mRNA_Ecto-sp13_S_contig14624.3551.1 vs. uniprot
Match: F0Y2I0_AURAN (Coronin n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2I0_AURAN)

HSP 1 Score: 258 bits (658), Expect = 1.130e-80
Identity = 149/247 (60.32%), Postives = 188/247 (76.11%), Query Frame = 1 
Query:    1 AVLPYNKPGRFVRGGPLVSGHTASVLDFDFNPFHEQLVASCSEDCTVKVWGIPEDGFAETETEALIDLQGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIEAGMNINTLSAHEQLIQDIVWDFYGNTYATSCKDKSLRIIDARSPQVAQSVAMAHEGARSSKITYLGT----KEKLVSVGFTKQSQRQFKVWDPRNLSKEIKKIEIDQAAGVILPFYDDESSLLYLAGKGDGNIRYYEVRPCLPY 729
            AV+PY K G+F  G P+V+GH ++VLDFDFNPFHE ++AS SED T+KVWGIP DG  ET TE L+DL GH      XXXXXXXXXXXXXXXXXXXXXXXDIE G  ++ + AHEQLIQD+VWD+ G  +AT+CKDK +R+ D R+  VA  +  AH GA+S K+T+LG     + +  +VGFTKQSQRQ KVWD R+LSK + K+++DQAAGVI+P+YD ++ +LYL GKGDGNIRYYE+    P+
Sbjct:   58 AVVPYGKKGQFAPGTPVVAGHKSAVLDFDFNPFHEHIIASASEDSTIKVWGIPPDGLTETITEPLVDLHGHGRKVTLXXXXXXXXXXXXXXXXXXXXXXXDIEKGCEVSGMPAHEQLIQDLVWDYEGKMWATTCKDKKVRLGDPRAGAVAMELPEAHAGAKSVKMTFLGDTGRFQRRFATVGFTKQSQRQIKVWDVRDLSKMVHKVDLDQAAGVIVPYYDCDTKVLYLCGKGDGNIRYYEMSKDKPF 304
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BLAST of mRNA_Ecto-sp13_S_contig14624.3551.1 vs. uniprot
Match: A0A2D4C4E8_PYTIN (Coronin (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4E8_PYTIN)

HSP 1 Score: 258 bits (658), Expect = 1.620e-80
Identity = 152/244 (62.30%), Postives = 184/244 (75.41%), Query Frame = 1 
Query:    1 AVLPYNKPGRFVRGGPLVSGHTASVLDFDFNPFHEQLVASCSEDCTVKVWGIPEDGFAETETEALIDLQGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIEAGMNINTLSAH-EQLIQDIVWDFYGNTYATSCKDKSLRIIDARSPQVAQSVAMAHEGARSSKITYLGTKEKLVSVGFTKQSQRQFKVWDPRNLSKEIKKIEIDQAAGVILPFYDDESSLLYLAGKGDGNIRYYEVRPCLPY 729
            AV+PY K G+F    PLVSGH  ++LDFDFNPFHE L+AS S+D T+K+WGIPE G +ET    L+DLQGH      XXXXXXXXXXXXXXXXXXXXXXX  E G  I ++ AH E L+QD+ W + G+   T+CKDK +R+ DARS QVA     AH G +S K+T+LG KE  V+VGFTKQSQRQFK+WDPR L KE+KK++IDQAAGVI+PFYD +++LLYL GKGDGNIRYYE+    PY
Sbjct:   58 AVVPYEKVGKFDPDFPLVSGHRGAILDFDFNPFHEHLIASASDDTTIKIWGIPEGGLSETCVXPLVDLQGHGRKVTLXXXXXXXXXXXXXXXXXXXXXXXXXEKGSEIVSMEAHGENLVQDLAWSWTGSMLGTTCKDKIVRLYDARSGQVAALKDGAHGGTKSVKMTFLGDKETFVTVGFTKQSQRQFKIWDPRKLDKELKKVDIDQAAGVIMPFYDPDTNLLYLCGKGDGNIRYYEMSEGEPY 301
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BLAST of mRNA_Ecto-sp13_S_contig14624.3551.1 vs. uniprot
Match: A0A7R9YBR7_9STRA (Coronin (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBR7_9STRA)

HSP 1 Score: 245 bits (626), Expect = 2.840e-76
Identity = 121/245 (49.39%), Postives = 165/245 (67.35%), Query Frame = 1 
Query:    1 AVLPYNKPGRFVRGGPLVSGHTASVLDFDFNPFHEQLVASCSEDCTVKVWGIPEDGFAETET--EALIDLQGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIEAGMNINTLSAHEQLIQDIVWDFYGNTYATSCKDKSLRIIDARSPQVAQSVAMAHEGARSSKITYLGTKEKLVSVGFTKQSQRQFKVWDPRNLSKEIKKIEIDQAAGVILPFYDDESSLLYLAGKGDGNIRYYEVRPCLPY 729
            AV   N  GR+    P++SGH ++VLDF+F+PF+  L+AS S+D T+K+WGIP++G ++T T  +AL DL  H                             D+E    I+T +  + LIQDIVWD+ G+ YA SCKDK +RI+D R+ +   S   AHEGA+S K+TYLG K+KLV+VGFT+QSQRQFK+WDPRN S+ +K+++IDQ+AGVI+PFYD ++ LLYLAGKGDGNIRYYE+    P+
Sbjct:   59 AVCDVNSTGRYDPDAPIISGHRSAVLDFEFSPFNPNLLASASDDSTIKLWGIPDEGLSQTLTSDDALADLTAHGRKVTLLRFHPTANNVLASASADFTTKVWDVEHSSEISTFAECQALIQDIVWDYMGSNYAVSCKDKLIRIVDGRTAECTASF-QAHEGAKSCKLTYLGQKDKLVTVGFTRQSQRQFKIWDPRNTSEALKRVDIDQSAGVIMPFYDPDTCLLYLAGKGDGNIRYYEMSDENPF 302
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BLAST of mRNA_Ecto-sp13_S_contig14624.3551.1 vs. uniprot
Match: A0A024FW98_9STRA (Coronin n=2 Tax=Albugo TaxID=65356 RepID=A0A024FW98_9STRA)

HSP 1 Score: 245 bits (626), Expect = 1.100e-75
Identity = 147/244 (60.25%), Postives = 184/244 (75.41%), Query Frame = 1 
Query:    1 AVLPYNKPGRFVRGGPLVSGHTASVLDFDFNPFHEQLVASCSEDCTVKVWGIPEDGFAETETEALIDLQGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIEAGMNINTLS-AHEQLIQDIVWDFYGNTYATSCKDKSLRIIDARSPQVAQSVAMAHEGARSSKITYLGTKEKLVSVGFTKQSQRQFKVWDPRNLSKEIKKIEIDQAAGVILPFYDDESSLLYLAGKGDGNIRYYEVRPCLPY 729
            AV+PY   G+     PL+SGH  ++LDFDFNPFHE L+AS SED T+K+WG+PE G  ET +E L+DL GH   XXXXXXXXXXXXXXXXXXXXXXXXXX IE    + ++    + L  DI W++ G+  ATSCKDK +R+ DARS Q+A     AH G++S KITYLG K+  VSVGFT+ SQR+FKVWDPRNLSKE+KK+++DQAAG I+PFYD +++LLYL GKGDGN+RYYE+    P+
Sbjct:   58 AVVPYECYGKIDPDFPLISGHRGAILDFDFNPFHEHLLASASEDTTIKIWGVPEGGVTETCSEPLVDLTGHGRKXXXXXXXXXXXXXXXXXXXXXXXXXXXIEKSSEVVSMQFIGDNLYHDIAWNWTGSVLATSCKDKVIRLFDARSGQLAAQKENAHNGSKSCKITYLGNKDTFVSVGFTRTSQREFKVWDPRNLSKELKKVDLDQAAGAIMPFYDPDTNLLYLCGKGDGNVRYYEMSAGEPF 301
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BLAST of mRNA_Ecto-sp13_S_contig14624.3551.1 vs. uniprot
Match: A0A067BYT2_SAPPC (Coronin n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BYT2_SAPPC)

HSP 1 Score: 242 bits (618), Expect = 1.650e-74
Identity = 140/244 (57.38%), Postives = 180/244 (73.77%), Query Frame = 1 
Query:    1 AVLPYNKPGRFVRGGPLVSGHTASVLDFDFNPFHEQLVASCSEDCTVKVWGIPEDGFAETETEALIDLQGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIEAGMNINTLSAH-EQLIQDIVWDFYGNTYATSCKDKSLRIIDARSPQVAQSVAMAHEGARSSKITYLGTKEKLVSVGFTKQSQRQFKVWDPRNLSKEIKKIEIDQAAGVILPFYDDESSLLYLAGKGDGNIRYYEVRPCLPY 729
            AV+PY K G+F    PL+ GH  +++DFDFNPFHE L+AS S+D T+KVWGIPE G  ET TE L+DL GH        XXXXXXXXXXXXXXXXXXXXX       I  +  + E L+QD+ W++ G+T AT+CKDK +R+ DARS QV+     AHEG++S K+T+LG K+   +VGF++QSQR+ KVWDPR L KE+KKI+IDQAAGVI+PF+D ++++LYL GKGDGNIRYYE+    P+
Sbjct:   58 AVVPYEKVGKFDPDFPLIGGHRGAIMDFDFNPFHEHLIASASDDTTLKVWGIPEGGLTETMTEPLVDLTGHGRKVTLTYXXXXXXXXXXXXXXXXXXXXXXXXXXSQIVNMEHNTENLVQDMAWNWTGSTLATTCKDKVVRLYDARSGQVSAQKENAHEGSKSVKLTFLGEKDLFATVGFSRQSQRRLKVWDPRKLDKELKKIDIDQAAGVIMPFFDADTNILYLCGKGDGNIRYYEMNDADPF 301
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BLAST of mRNA_Ecto-sp13_S_contig14624.3551.1 vs. uniprot
Match: A0A6G0W619_9STRA (Coronin n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0W619_9STRA)

HSP 1 Score: 242 bits (618), Expect = 1.740e-74
Identity = 147/244 (60.25%), Postives = 180/244 (73.77%), Query Frame = 1 
Query:    1 AVLPYNKPGRFVRGGPLVSGHTASVLDFDFNPFHEQLVASCSEDCTVKVWGIPEDGFAETETEALIDLQGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIEAGMNINTLSAH-EQLIQDIVWDFYGNTYATSCKDKSLRIIDARSPQVAQSVAMAHEGARSSKITYLGTKEKLVSVGFTKQSQRQFKVWDPRNLSKEIKKIEIDQAAGVILPFYDDESSLLYLAGKGDGNIRYYEVRPCLPY 729
            AV+PY K G+F    PLV GH  +++DFDFNPFHE L+AS S+D TVKVWGIPE G  ET TE L+DL GH      XXXXXXXXXXXXXXXXXXXXXXX    G  I     + E LIQD+ W + G+T ATS KDK +R+ DARS  V   V  AHEG++S K+++LG KE  VSVGF++QSQR+ KVWDPR L KE+K+I+IDQAAGVI+PF+D ++++LYL GKGDGNIRYYE+    P+
Sbjct:   58 AVVPYEKVGKFDPDFPLVGGHRGAIMDFDFNPFHEHLIASASDDTTVKVWGIPEGGLTETMTEPLVDLTGHGRKVTLXXXXXXXXXXXXXXXXXXXXXXXXXXKGSQIVNFDYNTENLIQDMAWSYTGSTLATSGKDKIVRLFDARSGSVTSEV-QAHEGSKSIKLSFLGEKELFVSVGFSRQSQRRLKVWDPRKLDKELKRIDIDQAAGVIMPFFDSDTNVLYLCGKGDGNIRYYEMNDAEPF 300
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14624.3551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU94_ECTSI2.070e-13899.15Coronin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU94... [more]
A0A835YLY0_9STRA1.220e-10074.04Coronin n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
A0A836CNW2_9STRA1.490e-9674.04Coronin n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
A0A7S3H1X9_9STRA1.180e-8465.84Coronin n=1 Tax=Spumella elongata TaxID=89044 RepI... [more]
F0Y2I0_AURAN1.130e-8060.32Coronin n=1 Tax=Aureococcus anophagefferens TaxID=... [more]
A0A2D4C4E8_PYTIN1.620e-8062.30Coronin (Fragment) n=1 Tax=Pythium insidiosum TaxI... [more]
A0A7R9YBR7_9STRA2.840e-7649.39Coronin (Fragment) n=1 Tax=Pinguiococcus pyrenoido... [more]
A0A024FW98_9STRA1.100e-7560.25Coronin n=2 Tax=Albugo TaxID=65356 RepID=A0A024FW9... [more]
A0A067BYT2_SAPPC1.650e-7457.38Coronin n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A... [more]
A0A6G0W619_9STRA1.740e-7460.25Coronin n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14624contigEcto-sp13_S_contig14624:2..4370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score410.2
Seed ortholog evalue6.6e-112
Seed eggNOG ortholog2880.D8LU94
Preferred nameCORO2A
Model size729
KEGG koko:K13882,ko:K13886,ko:K13887
KEGG Pathwayko04145,ko05152,map04145,map05152
Hectar predicted targeting categoryother localisation
GOsGO:0000147,GO:0000278,GO:0000281,GO:0000910,GO:0001667,GO:0001725,GO:0001755,GO:0001772,GO:0001775,GO:0001776,GO:0001845,GO:0001891,GO:0001894,GO:0001906,GO:0001909,GO:0001932,GO:0001933,GO:0001952,GO:0001953,GO:0002228,GO:0002252,GO:0002260,GO:0002263,GO:0002285,GO:0002323,GO:0002366,GO:0002376,GO:0002443,GO:0002449,GO:0002520,GO:0002521,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0003674,GO:0003779,GO:0003785,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005826,GO:0005829,GO:0005856,GO:0005884,GO:0005885,GO:0005886,GO:0005901,GO:0005903,GO:0005911,GO:0005937,GO:0005938,GO:0006469,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006887,GO:0006897,GO:0006909,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006955,GO:0006970,GO:0006972,GO:0006996,GO:0007010,GO:0007015,GO:0007017,GO:0007033,GO:0007040,GO:0007049,GO:0007154,GO:0007155,GO:0007162,GO:0007165,GO:0007166,GO:0007275,GO:0007525,GO:0007527,GO:0008017,GO:0008022,GO:0008064,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008154,GO:0008284,GO:0008360,GO:0009267,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009620,GO:0009628,GO:0009719,GO:0009888,GO:0009892,GO:0009986,GO:0009987,GO:0009991,GO:0010033,GO:0010324,GO:0010467,GO:0010522,GO:0010563,GO:0010605,GO:0010631,GO:0010632,GO:0010633,GO:0010638,GO:0010639,GO:0010721,GO:0010762,GO:0010769,GO:0010771,GO:0010810,GO:0010812,GO:0010941,GO:0010959,GO:0012505,GO:0012506,GO:0014031,GO:0014032,GO:0014033,GO:0014070,GO:0014910,GO:0014912,GO:0015629,GO:0015631,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016328,GO:0016477,GO:0016482,GO:0016600,GO:0017016,GO:0017022,GO:0017048,GO:0017053,GO:0019220,GO:0019222,GO:0019899,GO:0022402,GO:0022407,GO:0022409,GO:0022411,GO:0022603,GO:0022604,GO:0022607,GO:0022610,GO:0023052,GO:0030001,GO:0030027,GO:0030029,GO:0030030,GO:0030036,GO:0030041,GO:0030042,GO:0030054,GO:0030097,GO:0030098,GO:0030101,GO:0030139,GO:0030154,GO:0030155,GO:0030217,GO:0030334,GO:0030335,GO:0030336,GO:0030424,GO:0030427,GO:0030479,GO:0030587,GO:0030595,GO:0030659,GO:0030666,GO:0030674,GO:0030832,GO:0030833,GO:0030834,GO:0030835,GO:0030838,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031090,GO:0031152,GO:0031252,GO:0031267,GO:0031323,GO:0031324,GO:0031334,GO:0031338,GO:0031339,GO:0031344,GO:0031345,GO:0031346,GO:0031399,GO:0031400,GO:0031410,GO:0031529,GO:0031589,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032036,GO:0032101,GO:0032102,GO:0032153,GO:0032155,GO:0032268,GO:0032269,GO:0032271,GO:0032273,GO:0032420,GO:0032421,GO:0032426,GO:0032432,GO:0032501,GO:0032502,GO:0032506,GO:0032535,GO:0032796,GO:0032879,GO:0032940,GO:0032944,GO:0032946,GO:0032956,GO:0032970,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033554,GO:0033673,GO:0034097,GO:0034315,GO:0034316,GO:0034613,GO:0034622,GO:0034762,GO:0034765,GO:0035556,GO:0035767,GO:0035838,GO:0036089,GO:0036119,GO:0036120,GO:0038179,GO:0038180,GO:0040011,GO:0040012,GO:0040013,GO:0040017,GO:0042060,GO:0042102,GO:0042110,GO:0042127,GO:0042129,GO:0042221,GO:0042267,GO:0042325,GO:0042326,GO:0042330,GO:0042493,GO:0042592,GO:0042594,GO:0042641,GO:0042742,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043029,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043086,GO:0043087,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043242,GO:0043244,GO:0043254,GO:0043269,GO:0043299,GO:0043320,GO:0043332,GO:0043519,GO:0043521,GO:0043523,GO:0043524,GO:0043542,GO:0043547,GO:0043548,GO:0043549,GO:0043624,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044092,GO:0044093,GO:0044387,GO:0044396,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044463,GO:0044464,GO:0044764,GO:0044853,GO:0044877,GO:0045055,GO:0045087,GO:0045121,GO:0045184,GO:0045321,GO:0045335,GO:0045472,GO:0045595,GO:0045596,GO:0045785,GO:0045859,GO:0045936,GO:0046649,GO:0046677,GO:0046903,GO:0046907,GO:0046983,GO:0048365,GO:0048468,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048585,GO:0048731,GO:0048762,GO:0048856,GO:0048863,GO:0048864,GO:0048869,GO:0048870,GO:0048871,GO:0048872,GO:0048873,GO:0050670,GO:0050671,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050832,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0050900,GO:0050918,GO:0050920,GO:0050922,GO:0051015,GO:0051017,GO:0051020,GO:0051049,GO:0051051,GO:0051093,GO:0051094,GO:0051125,GO:0051126,GO:0051127,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051249,GO:0051251,GO:0051258,GO:0051261,GO:0051270,GO:0051271,GO:0051272,GO:0051279,GO:0051282,GO:0051286,GO:0051301,GO:0051336,GO:0051338,GO:0051345,GO:0051348,GO:0051493,GO:0051494,GO:0051495,GO:0051641,GO:0051649,GO:0051666,GO:0051674,GO:0051703,GO:0051704,GO:0051707,GO:0051716,GO:0051893,GO:0051895,GO:0051924,GO:0060090,GO:0060249,GO:0060255,GO:0060284,GO:0060326,GO:0060341,GO:0060485,GO:0060491,GO:0060548,GO:0060627,GO:0061024,GO:0061061,GO:0061502,GO:0061572,GO:0061640,GO:0061645,GO:0061802,GO:0061836,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070528,GO:0070663,GO:0070665,GO:0070670,GO:0070727,GO:0070838,GO:0070848,GO:0070887,GO:0070925,GO:0070938,GO:0071310,GO:0071345,GO:0071353,GO:0071363,GO:0071495,GO:0071496,GO:0071671,GO:0071672,GO:0071704,GO:0071840,GO:0071933,GO:0071944,GO:0072511,GO:0080090,GO:0080171,GO:0090066,GO:0090109,GO:0090130,GO:0090132,GO:0090135,GO:0090382,GO:0090630,GO:0090702,GO:0097327,GO:0097435,GO:0097458,GO:0097517,GO:0097708,GO:0098542,GO:0098588,GO:0098589,GO:0098590,GO:0098630,GO:0098657,GO:0098743,GO:0098796,GO:0098797,GO:0098805,GO:0098857,GO:0098858,GO:0098862,GO:0098927,GO:0099024,GO:0099080,GO:0099081,GO:0099120,GO:0099512,GO:0099513,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1900024,GO:1900025,GO:1900027,GO:1901214,GO:1901215,GO:1901654,GO:1901700,GO:1901879,GO:1901880,GO:1901888,GO:1901889,GO:1902410,GO:1902463,GO:1902743,GO:1902744,GO:1902745,GO:1902903,GO:1902904,GO:1902905,GO:1903037,GO:1903039,GO:1903047,GO:1903169,GO:1903391,GO:1903392,GO:1903673,GO:1904062,GO:1904643,GO:1905861,GO:1990089,GO:1990090,GO:1990819,GO:2000145,GO:2000146,GO:2000147,GO:2000392,GO:2000393,GO:2000394,GO:2000601
Exons5
EggNOG free text desc.actin filament binding
EggNOG OGsCOG1985@1,KOG0303@2759
Cds size729
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462781.2343862-CDS-Ecto-sp13_S_contig14624:1..1091681462781.2343862-CDS-Ecto-sp13_S_contig14624:1..109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14624 2..109 +
1681462781.269303-CDS-Ecto-sp13_S_contig14624:961..11221681462781.269303-CDS-Ecto-sp13_S_contig14624:961..1122Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14624 962..1122 +
1681462781.2792845-CDS-Ecto-sp13_S_contig14624:3065..32491681462781.2792845-CDS-Ecto-sp13_S_contig14624:3065..3249Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14624 3066..3249 +
1681462781.2891867-CDS-Ecto-sp13_S_contig14624:3824..39961681462781.2891867-CDS-Ecto-sp13_S_contig14624:3824..3996Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14624 3825..3996 +
1681462781.2969186-CDS-Ecto-sp13_S_contig14624:4266..43701681462781.2969186-CDS-Ecto-sp13_S_contig14624:4266..4370Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14624 4267..4370 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14624.3551.1prot_Ecto-sp13_S_contig14624.3551.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14624 2..4370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14624.3551.1

>prot_Ecto-sp13_S_contig14624.3551.1 ID=prot_Ecto-sp13_S_contig14624.3551.1|Name=mRNA_Ecto-sp13_S_contig14624.3551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=243bp
AVLPYNKPGRFVRGGPLVSGHTASVLDFDFNPFHEQLVASCSEDCTVKVW
GIPEDGFAETETEALIDLQGHGRKVTLLRFHPTANNVLASVSADMTVKLW
DIEAGMNINTLSAHEQLIQDIVWDFYGNTYATSCKDKSLRIIDARSPQVA
QSVAMAHEGARSSKITYLGTKEKLVSVGFTKQSQRQFKVWDPRNLSKEIK
KIEIDQAAGVILPFYDDESSLLYLAGKGDGNIRYYEVRPCLPY
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mRNA from alignment at Ecto-sp13_S_contig14624:2..4370+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14624.3551.1 ID=mRNA_Ecto-sp13_S_contig14624.3551.1|Name=mRNA_Ecto-sp13_S_contig14624.3551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14624:2..4370+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGTGCTGCCGTACAACAAGCCCGGCCGATTCGTGCGCGGAGGGCCGCT
CGTGTCCGGCCACACGGCGTCCGTACTGGACTTCGATTTCAACCCTTTCC
ACGAGCAGGTGTGTGGGTGCAGACATAAGAAAGATTTCCCGACGTGGGCC
CAAGGCGCTCTCTACCTGTCGATGTCGCTGTATTTGCCATCTTAAATATG
TGGGTTACCTACTTGGCGTTGGCTTGGATTGGCAGCGACATGAGGCATGT
GTTTTGGGTGACTGGCTGTTTTTTCTACGTCGGGCCCACTCGATCAACTT
GTTACTCCAGTGAGTGCCTTCCTTTGTTGTGCGTGTTGGCTTAGCCACAG
CAAGTCTGCTCAACCCTTCCAGTGTACGCTACTTGGTGTGAAACGCGCAA
ACCTCGGGATGTCGTGTATGGAGGTGGAGGGATTGGTGGAGCTTCGGGTT
AGGAGTGCTGAGGGCCTGGGTATACTTTCATTATTGCTCCCTTGGCCTGG
TCGCCTTGTCCACTGGTGTGACCTATTGTCGCCCGACCAACTCCACCGTG
CTTCCTACGTCCCTCTGCGTTGGCTTCTTTCCATCTTTCTCGTCCCTCTA
AGCGTGTTCGGAGGAGAATCTTGGTTGTGTTTCTTAATGTCGCCGGTCTT
GTGGGACTTGTGTGTTCCCCATCGTGCGTCTCTGCCTGCCTGTCTGTCTG
TCTGTATTGACTGTGTGCGTATGTGTCTCTCTCTGTCTGTGTTCGTCCTC
TGTTCCTCTCTCCCGCCGCCCCCGCTCTCTCTCCGTGCCTTTATCGGGCA
CACGGACGGGGCGCTTGATTGATTCCCGCATCTCCGGCCAACCGGCGACC
GGATGTGGATATACGAAACGGGTGCGTGGATGGGGGTTGCGTACGCGTGT
TGAACGACGATGCGAAATGGAACAATCGAAATGTCGCGATGGCGTCCTTC
GTCCCTGCAGCTGGTTGCCAGTTGCTCGGAGGACTGCACCGTGAAGGTGT
GGGGCATCCCCGAGGACGGCTTCGCGGAGACGGAGACGGAGGCTCTCATC
GACCTGCAGGGCCACGGCCGCAAGGTTACCCTCCTGCGGTTCCACCCCAC
CGCCAACAATGTGCTGGCAAGGTATGATTGTGCTGCTGCGGAGGAGGGAT
CGGTTGTAGCGCTCTCGGAGGCATGGCCGGTGTGTAGGTGGATCTCTCAG
GAGAGTCGGGCATGTAGGGGAAACATGTGATTCTATATGAACACCACCAA
CCTCTGGAGTCGTGAGGGGAGTACGTATCACCCCACCGGCCTAATGTGAC
CCAGTCGTAGCCTGTTTCCGTTGCATCGGGGCTTCCCTTATCCGTGCATG
GGAGGGAGTGGGGGCGAGGGGGGACAAAGAGAGTTGTCTCCGAGACTAGG
AGGACAAAATCAGGCGACCGGGAAGTGGTAGTAGAATCTAGGGTTTCCCC
CCGGAATTTCCTGTAAGGCCGTTAAACCTCCGGTCCAGTTTATCCTGTAG
CGAATTCCCTGTAAGCTAAGTTGCTGTTGAAAAGATCCAGTCCAGAGGCC
GGCCGCATCGTATCGGTTCGACCCGGTGCCAACCCCGTTTTCGTAGAAAA
ACAAAAAAATTATCGGGAAAGTTGCTGGAAACCCTATTTTCAGCGCGCGC
GGCGGTGTGGTGATTGTGTTATTGTTGAGCAGCAGCTCGCTGTAGCAGGG
CGCTTACAGCCATAGCACGACAAGCACGAGGGAGGATGGCAGCCGGGCGG
TACGCGGAGTGCATGAACCTTACCACGATCGTGCGCTAGTGGGTGAGGAA
GACCTATTTCTCGTGCTTGGGACGTGCAGCCTGCTGCGGGCGTGGTAGAT
GTACGAGCTGGCCACGCGGAAAAGCCTAGCTTGCCACACTCCACCACACT
CCAGAACAAGTCTCCTCCGACGCTTTTGGCAACGAACTCTACTCCTCCTT
TGGTCTTGGCCTCCTGCAGATTTTCCTTCTTGGTGTGGCGGTGGAACTGG
TGTCGGTTCGTCCCTCTGCTACCTTCATCCTACAGGAAATTTTGAGAGCC
TGGCCAAAATGATCCTGTCCCCAAACAGAAACTTCCGGTGCCCTTTTTCC
TGTTAGAAGTGCGGCGTAATCGCCTCAACCGGAAAAACAGACCGCTACCG
GAAAAACGGCCGCCAGCAGGAAATATCTACCCTATAGGGGAACCCCCCAA
ATATCTGGTTGTGATTTGTGTTGTCGCGGTGTGTGCAAAGTTAACGTTGT
GCCCTACTGCCATACGCGTGCGGTCGATGAGATAGATAGGACAAAATATG
CAGTGCATGCTCGGAGTGTACCAAGCGTTCATCGCGTATGCGGTGCGGTG
ATTTAGTGCCACGGCGTGGAAGCGATCGTGTGGGTTTTACCGACGGCTGA
ACCTGTCTTGTGATTTCCAAGAAGCTTTGTGAACATGATTGGTGGGCGCA
GCGATAAAAGTGGTTTGGGAGTTTCGACGCCGGTGCTGGCTCGTTTGTGT
AATTTTGTATCGACAGTTTTGCCACCTGATGAAATGGCGGAGATGACAGA
AGCGGACCATGTTTGTTGGTTGCCTTGCCCGTTCATCTTCATGGTCGTCG
TTGCTGTCCTCGACTGGGCACACGCCCTCGTGTGGACTGACGACGGGAGT
AGATACTAGACGTGAGTTGGAGCACACGAAGGTCGGGGCGAACAAGAGGT
GGAGAGGAAGGTGTTGCGGTGTGACCTCCGCTTTGTCACGAGACTATCGG
ACTAGAGGCGTTGCGTGCTGTTCTAGAAGGGCCTTTTGCGTGCTGTTACC
AGTCACTCAACGCAGGAATTCATTTCGTCGCTAGACTCCAAGACGAGGAG
GCATGGGTAGGTGTTGGCTGTTTTGCGGACCCCACACGGATCCCCCCCCC
CATACACACACATGCCACCAGCGGCCTTCACCTAACTCCTCTTACGTAAC
ATCCCGCAGTTTGAGATGTTCCAAGACCAATAGTACATGACCGTCTGCCC
TCTGTTGCTTTTTCGAAACCCTGCTATTAATTTGTCATGCACACCGCCAC
GAACCGCGACGCAGTGTGAGCGCCGATATGACCGTCAAGCTCTGGGATAT
CGAGGCCGGCATGAACATCAACACCCTCTCGGCACACGAGCAGCTGATCC
AGGACATCGTGTGGGACTTCTACGGAAACACGTACGCCACCTCTTGCAAG
GACAAGAGCCTCAGGATCATCGACGCGAGATCGCCTCAAGTGGCGCAGGT
GTGCGTCGAACGTTTTTTTTGGAACAAGGGATTTTGGGCGTCCATCCACA
CTTGTATGGTTTTGCTGCTGTGTTGCGAGGAAATGATCGCACGCTTCTTT
TTTTTCATTGTCGTGCTTCCATGATGGTTGTACTTGTGTAGCAGGTATTG
TTGGTTACATATAATATAGCATGGCCGCGATGAGGAGTCTGACCAATGAA
AAAACGGCCGTGTTAGCAGGAGCATTCTGCGAAGGGGGTAATGTGCGACG
CCCGAAAGTACCAAGACATAGCTAGCTTCCTGCAAGCCCTCTTGCGCCTT
GCCCACCTAAACCGTATGGGGCGCGCGCGTGTGTGTTCAATCAAATCGTG
CTATGTACCTGCCATCGGAGTAGTGCACCCATTCGCGTGAGAGTATTGTA
TGCATACCTCTTTGTTGGCGATTTTTATTCCTTGCGTTCCGTGTTTCATG
TCCTCCATGTATGCTGCTCGTCCATGTACACCTATCGTTACCGACTTTTC
TTCCTTGTGGTTGCTTGTCCCACGTCCTTCGTGTTGCTGCTCGTTCATCT
CTTCGTTTGTTGTTGGTTTGCAGTCCGTAGCGATGGCTCACGAGGGAGCA
CGTTCCTCCAAGATCACGTATCTCGGCACCAAGGAGAAGCTAGTCAGCGT
GGGGTTCACGAAGCAGAGCCAGCGGCAGTTCAAGGTGTGGGACCCGCGAA
ACCTGTCCAAGGAGATCAAGAAGATTGAGATCGACCAGGCGGCAGGTGCG
TCTGCCTGCTGTTTTGGCTTAAGTGTGGCTGCGGAATGTTGTCCCCGTGT
TTGTTGTTGATGCTTTGCCGTTAGTTTCTGCTGTCGTCGCGTGACCGACA
GGTCATCCTCTCATTGTCTGGGCCGATGCTCTCCGTTCCCAACGCGTTTT
TTTTCTTGTTTTTTATTTCTTGCCTGCTGCCTGCTGCCTGTTTACTGCTA
CGCTCGAATCCCATGCGCCGACAACGTGCGGTGAAAACTCGACGCCCGGC
GTGATACATGATCAGGCGTGATCCTTCCCTTCTACGATGACGAGAGCTCG
CTGCTGTACTTGGCGGGCAAGGGAGACGGCAACATTCGGTACTACGAGGT
GCGTCCATGCCTACCCTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14624:2..4370+

>mRNA_Ecto-sp13_S_contig14624.3551.1 ID=mRNA_Ecto-sp13_S_contig14624.3551.1|Name=mRNA_Ecto-sp13_S_contig14624.3551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=729bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14624:2..4370+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGTGCTGCCGTACAACAAGCCCGGCCGATTCGTGCGCGGAGGGCCGCT
CGTGTCCGGCCACACGGCGTCCGTACTGGACTTCGATTTCAACCCTTTCC
ACGAGCAGCTGGTTGCCAGTTGCTCGGAGGACTGCACCGTGAAGGTGTGG
GGCATCCCCGAGGACGGCTTCGCGGAGACGGAGACGGAGGCTCTCATCGA
CCTGCAGGGCCACGGCCGCAAGGTTACCCTCCTGCGGTTCCACCCCACCG
CCAACAATGTGCTGGCAAGTGTGAGCGCCGATATGACCGTCAAGCTCTGG
GATATCGAGGCCGGCATGAACATCAACACCCTCTCGGCACACGAGCAGCT
GATCCAGGACATCGTGTGGGACTTCTACGGAAACACGTACGCCACCTCTT
GCAAGGACAAGAGCCTCAGGATCATCGACGCGAGATCGCCTCAAGTGGCG
CAGTCCGTAGCGATGGCTCACGAGGGAGCACGTTCCTCCAAGATCACGTA
TCTCGGCACCAAGGAGAAGCTAGTCAGCGTGGGGTTCACGAAGCAGAGCC
AGCGGCAGTTCAAGGTGTGGGACCCGCGAAACCTGTCCAAGGAGATCAAG
AAGATTGAGATCGACCAGGCGGCAGGCGTGATCCTTCCCTTCTACGATGA
CGAGAGCTCGCTGCTGTACTTGGCGGGCAAGGGAGACGGCAACATTCGGT
ACTACGAGGTGCGTCCATGCCTACCCTAC
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