mRNA_Ecto-sp13_S_contig14611.3542.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14611.3542.1
Unique NamemRNA_Ecto-sp13_S_contig14611.3542.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14611.3542.1 vs. uniprot
Match: D7G3A1_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3A1_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 5.350e-48
Identity = 97/105 (92.38%), Postives = 100/105 (95.24%), Query Frame = 1 
Query:    1 MVDINNSAATTPTEEQDFQTFVATMIDATVHESSVLDYSTTTAGAILDTMAILSSSEKALNTDSQAVILASSASILDTAAGVGYWSSGMSTSSLQVLDQVIGAYD 315
            MV+INNSAA +PTE QDFQTFVATMIDATVHES+VLDYSTTTAGAILDTMAILSSSEKALNTDSQA ILASSASILDTA G GYWSSGMSTSSLQVLDQVIGAYD
Sbjct:  507 MVEINNSAAASPTEAQDFQTFVATMIDATVHESTVLDYSTTTAGAILDTMAILSSSEKALNTDSQAAILASSASILDTAVGEGYWSSGMSTSSLQVLDQVIGAYD 611
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BLAST of mRNA_Ecto-sp13_S_contig14611.3542.1 vs. uniprot
Match: A0A6H5JM67_9PHAE (GPS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM67_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 2.790e-41
Identity = 86/105 (81.90%), Postives = 95/105 (90.48%), Query Frame = 1 
Query:    1 MVDINNSAATTPTEEQDFQTFVATMIDATVHESSVLDYSTTTAGAILDTMAILSSSEKALNTDSQAVILASSASILDTAAGVGYWSSGMSTSSLQVLDQVIGAYD 315
            +V+INNSAA TPTEEQ+FQTFVATMI+ATV ES+VLDYSTT AGAILDTM +LSSSEKALNTDSQA ILASSASIL TAAG GYW SGM T +++VLDQVIGAYD
Sbjct:  230 IVEINNSAAATPTEEQEFQTFVATMINATVRESTVLDYSTTMAGAILDTMVVLSSSEKALNTDSQAAILASSASILITAAGEGYWDSGMYTPTVEVLDQVIGAYD 334
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BLAST of mRNA_Ecto-sp13_S_contig14611.3542.1 vs. uniprot
Match: D7G3A0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3A0_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.880e-20
Identity = 59/99 (59.60%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:    1 MVDINNSAATTPTEEQDFQ----------------------TFVATMIDATVHESSVLDYSTTTAGAILDTMAILSSSEKALNTDSQAVILASSASILD 231
            +V+INNSAA TPTEEQ+FQ                      TFVATMIDATV ES+VLDYSTT AGAILDTM +LSSSEKALNTDSQ+++L   A + D
Sbjct:  505 IVEINNSAAATPTEEQEFQVWATRERYDVHSYPLSSRMHDMTFVATMIDATVRESTVLDYSTTMAGAILDTMVVLSSSEKALNTDSQSIVLLMEAGMED 603
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BLAST of mRNA_Ecto-sp13_S_contig14611.3542.1 vs. uniprot
Match: D7G398_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G398_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.900e-20
Identity = 59/99 (59.60%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:    1 MVDINNSAATTPTEEQDFQ----------------------TFVATMIDATVHESSVLDYSTTTAGAILDTMAILSSSEKALNTDSQAVILASSASILD 231
            +V+INNSAA TPTEEQ+FQ                      TFVATMIDATV ES+VLDYSTT AGAILDTM +LSSSEKALNTDSQ+++L   A + D
Sbjct:  958 IVEINNSAAATPTEEQEFQVWATRERYDVHSYPLSSRMHGMTFVATMIDATVRESTVLDYSTTMAGAILDTMVVLSSSEKALNTDSQSIVLLMEAGMED 1056
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BLAST of mRNA_Ecto-sp13_S_contig14611.3542.1 vs. uniprot
Match: D7FLQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLQ0_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.310e-11
Identity = 41/94 (43.62%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:   34 PTEEQDFQTFVATMIDATVHESSVLDYSTTTAGAILDTMAILSSSEKALNTDSQAVILASSASILDTAAGVGYWSSGMSTSSLQVLDQVIGAYD 315
            P E   +Q  +ATM+     +  VL+YSTTTAGA+LDTM ++S SE    +DSQ  IL+ SA +L+ A     W S   + +L++LD VIG Y+
Sbjct:   57 PEEITMYQGLMATMVQDAADDFEVLEYSTTTAGALLDTMVLVSGSENLRTSDSQEAILSLSAGVLERAVEEDSWDSDSFSPTLELLDNVIGGYN 150
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BLAST of mRNA_Ecto-sp13_S_contig14611.3542.1 vs. uniprot
Match: A0A6H5JLT2_9PHAE (GPS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT2_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.330e-11
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:   34 PTEEQDFQTFVATMIDATVHESSVLDYSTTTAGAILDTMAILSSSEKALNTDSQAVILASSASILDTAAGVGYWSSGMSTSSLQVLDQVIGAYD 315
            P E   +Q  +ATM+     +  VL+YSTTTAGA+LDTM ++S SE    +DSQ  IL+ S  +L+ A     W S   + +L+VLD VIG Y+
Sbjct:  114 PEEIAMYQGLMATMVQDAADDFEVLEYSTTTAGALLDTMVLVSGSENLRTSDSQEAILSLSTGVLERAVEEDSWDSDSFSPTLEVLDNVIGGYN 207
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BLAST of mRNA_Ecto-sp13_S_contig14611.3542.1 vs. uniprot
Match: D7G4X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X3_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.400e-10
Identity = 41/94 (43.62%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:   34 PTEEQDFQTFVATMIDATVHESSVLDYSTTTAGAILDTMAILSSSEKALNTDSQAVILASSASILDTAAGVGYWSSGMSTSSLQVLDQVIGAYD 315
            P E   +Q  +ATM+  T  +  VL+YSTTTAGA+LD M ++S SE    +DSQ  IL+ SA +L+ A     W S   + +L++LD VIG Y+
Sbjct:  999 PEEIALYQGLMATMVQDTAGDFEVLEYSTTTAGALLDAMVLVSGSENLRTSDSQEAILSLSAGVLERALEEESWDSDSFSPTLELLDNVIGGYN 1092
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14611.3542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G3A1_ECTSI5.350e-4892.38GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JM67_9PHAE2.790e-4181.90GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G3A0_ECTSI1.880e-2059.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G398_ECTSI1.900e-2059.60GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FLQ0_ECTSI1.310e-1143.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLT2_9PHAE5.330e-1143.62GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4X3_ECTSI1.400e-1043.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14611contigEcto-sp13_S_contig14611:2366..3684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score176.8
Seed ortholog evalue5.3e-42
Seed eggNOG ortholog2880.D7G3A1
Model size315
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.detection of mechanical stimulus
EggNOG OGsKOG3599@1,KOG3599@2759
Cds size315
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462780.688675-CDS-Ecto-sp13_S_contig14611:2365..24221681462780.688675-CDS-Ecto-sp13_S_contig14611:2365..2422Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14611 2366..2422 +
1681462780.7008553-CDS-Ecto-sp13_S_contig14611:3234..33721681462780.7008553-CDS-Ecto-sp13_S_contig14611:3234..3372Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14611 3235..3372 +
1681462780.711561-CDS-Ecto-sp13_S_contig14611:3564..36841681462780.711561-CDS-Ecto-sp13_S_contig14611:3564..3684Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14611 3565..3684 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14611.3542.1prot_Ecto-sp13_S_contig14611.3542.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14611 2366..3684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14611.3542.1

>prot_Ecto-sp13_S_contig14611.3542.1 ID=prot_Ecto-sp13_S_contig14611.3542.1|Name=mRNA_Ecto-sp13_S_contig14611.3542.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MVDINNSAATTPTEEQDFQTFVATMIDATVHESSVLDYSTTTAGAILDTM
AILSSSEKALNTDSQAVILASSASILDTAAGVGYWSSGMSTSSLQVLDQV
IGAYD
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mRNA from alignment at Ecto-sp13_S_contig14611:2366..3684+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14611.3542.1 ID=mRNA_Ecto-sp13_S_contig14611.3542.1|Name=mRNA_Ecto-sp13_S_contig14611.3542.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1319bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14611:2366..3684+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGACATCAACAACAGTGCCGCGACTACACCTACTGAAGAACAAGA
CTTCCAGGTGAGGTTTACGGTGCGTCATTATGATAATGTGCCTCAAGCAC
ATAGCTTCCTCAAACAAACGTAGATATGTCCAGTTCCAAACGTGGTAAAC
TTCTGACGAATGCGATGTGGGTTCAAGTTGTCGGCGCAGTTACGCGAATG
TTTGGATAACGCCTAATTGTGTATGCGCAACATCTTCAACTCATCGGACG
GACTAGTGAAAAGCTTGGTTATATCCCTGTCGCGCGGTCACTATCGAGGC
CGATACCGCAGACGGACGTTTAAGATTGAAGAATATGCTGCTCCTGGGTG
GCTATCCCCCTATCGCACCCGACTGATACAAACCGTTTACCGCTGGCAAC
CAGACCAAAAGAACGACAAGCATACACAGGCATCATCATCATGAAGGTGC
AGCACGCGGACAAAAAATAACTCAAAGACTGTCCAGCTGCGGTGCTTTCC
GGGCTAAGGGTAAATCTGGGCATAGATCGTGCGGCTTACCGAACACCAAC
ATTTTGGGCCCGAAGGCGACTTAAATATATTCGGCTTTCCACTCCTTTTG
TCTGACGCAAAACTATGTACTCGAAGAAATATTTCTACCACACCAAGAAT
ACTCTTCTTTGGCAGCCGTTCGGATTACCCAAGAGGTTTGTGCGGGCGGG
GGTGATGCACTATTGGCAGTGTTTTGGGGGGCGACTCCAGGAGCCCCTTG
CAAAGTGATGTGCCCGTTCTAACATTGGCTCAGAGGTGATTTGGGAATGC
CGTTGGGCACGAGTTTTCATCTGCAATCAAACAGATCGATGCCGTCGCCG
TTCTCAATTCCCGCCGCAGACCTTCGTGGCCACCATGATTGATGCAACCG
TGCACGAATCCAGCGTGTTAGACTACTCGACCACGACGGCGGGGGCTATT
CTAGACACAATGGCCATTCTGTCGAGCAGCGAAAAGGCATTGAACACGGA
TTCGCAGGTAGGTGCGCGTTATTCGGTGTGGAATTTGGGCCTCGAGCGCG
AACGTGGGTTGGAACGGCTGGGACATGGTTGTACAGAGCCGTGGCGATTT
CATCCCACTTGTACGTAGTCGTGGACGTGGAAAATTTAGGTGGCATTGCG
ATGAACGCATGACCACAATGAGATCGCTGAAGGTGTTGCATGCGCTCAGG
CAGTCATATTGGCGTCTTCAGCCTCCATCCTGGACACAGCAGCCGGGGTA
GGCTACTGGAGCTCCGGCATGTCCACCTCTTCTCTGCAGGTGTTGGACCA
AGTGATTGGGGCGTACGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14611:2366..3684+

>mRNA_Ecto-sp13_S_contig14611.3542.1 ID=mRNA_Ecto-sp13_S_contig14611.3542.1|Name=mRNA_Ecto-sp13_S_contig14611.3542.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14611:2366..3684+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGACATCAACAACAGTGCCGCGACTACACCTACTGAAGAACAAGA
CTTCCAGACCTTCGTGGCCACCATGATTGATGCAACCGTGCACGAATCCA
GCGTGTTAGACTACTCGACCACGACGGCGGGGGCTATTCTAGACACAATG
GCCATTCTGTCGAGCAGCGAAAAGGCATTGAACACGGATTCGCAGGCAGT
CATATTGGCGTCTTCAGCCTCCATCCTGGACACAGCAGCCGGGGTAGGCT
ACTGGAGCTCCGGCATGTCCACCTCTTCTCTGCAGGTGTTGGACCAAGTG
ATTGGGGCGTACGAC
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