mRNA_Ecto-sp13_S_contig14607.3537.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14607.3537.1
Unique NamemRNA_Ecto-sp13_S_contig14607.3537.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14607.3537.1 vs. uniprot
Match: D8LJJ8_ECTSI (Protein phosphatase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ8_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 6.600e-32
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1
Query:    1 GWRVDMEDSHTIVANVAGLEGHSFVAVFDGHGGALCAAYAGENMMRHVMETAEFAEYA 174
            GWRVDMEDSHTIVANVAGLEGHSFVAVFDGHGGALCAAYAGENMMRHVMETAEFAEYA
Sbjct:   32 GWRVDMEDSHTIVANVAGLEGHSFVAVFDGHGGALCAAYAGENMMRHVMETAEFAEYA 89          
BLAST of mRNA_Ecto-sp13_S_contig14607.3537.1 vs. uniprot
Match: A0A6H5KCZ0_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ0_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.680e-28
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1
Query:   16 MEDSHTIVANVAGLEGHSFVAVFDGHGGALCAAYAGENMMRHVMETAEFAEYA 174
            MEDSHTIVANVAGLEGHSFVAVFDGHGGALCAAYAGENMMRHVMETAEFAEYA
Sbjct:    1 MEDSHTIVANVAGLEGHSFVAVFDGHGGALCAAYAGENMMRHVMETAEFAEYA 53          
BLAST of mRNA_Ecto-sp13_S_contig14607.3537.1 vs. uniprot
Match: A0A835ZAX4_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAX4_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 5.170e-16
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    1 GWRVDMEDSHTIVANVAGLEGHSFVAVFDGHGGALCAAYAGENMMRHVMETAEFAEY 171
            GWRV+MEDSHTI+  + GL  HSFVAV+DGHGG++CA YAG+ MMR +  T ++  Y
Sbjct:   40 GWRVEMEDSHTIITAMPGLPNHSFVAVYDGHGGSMCATYAGKEMMRFLRATPDYEAY 96          
BLAST of mRNA_Ecto-sp13_S_contig14607.3537.1 vs. uniprot
Match: A0A835ZBU3_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBU3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.070e-12
Identity = 33/57 (57.89%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    1 GWRVDMEDSHTIVANVAGLEGHSFVAVFDGHGGALCAAYAGENMMRHVMETAEFAEY 171
            GWR  MED+H I   +A L GHSFVAVFDGHGGA CA +A + M + V +T EF  Y
Sbjct:   47 GWRDAMEDAHIICPRLADLPGHSFVAVFDGHGGAACARFAAQTMPQLVEDTQEFRRY 103          
BLAST of mRNA_Ecto-sp13_S_contig14607.3537.1 vs. uniprot
Match: A0A4D9CRJ3_9STRA (PPM-type phosphatase domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CRJ3_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 9.000e-12
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    1 GWRVDMEDSHTIVANV-AGLEGHSFVAVFDGHGGALCAAYAGENMMRHVMETAEFAEY 171
            GWRV+MED+HT++  +   LEGHSF+AV+DGHGG   A YAG++M   V  T  + EY
Sbjct:   31 GWRVEMEDAHTVIETMDPELEGHSFIAVYDGHGGQYSAIYAGKHMADFVRRTVAYTEY 88          
BLAST of mRNA_Ecto-sp13_S_contig14607.3537.1 vs. uniprot
Match: A0A7S2V4V3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4V3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.450e-11
Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    1 GWRVDMEDSHTIVANVAGLEGHSFVAVFDGHGGALCAAYAGENMMRHVMETAEFAEY 171
            GWRV+MED HTI  ++ GL+ HS VAV+DGHGG   A +AG+ ++   + +   AEY
Sbjct:   31 GWRVEMEDQHTIEVHLTGLQDHSLVAVYDGHGGQFAAKFAGKTLVAEFLSSESVAEY 87          
BLAST of mRNA_Ecto-sp13_S_contig14607.3537.1 vs. uniprot
Match: A0A6U5FKN3_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5FKN3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.020e-10
Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    1 GWRVDMEDSHTIVANVAGLEGHSFVAVFDGHGGALCAAYAGENMMRHVMETAEFAEY 171
            GWRV+MED H +  N+  L+G SF AVFDGHGG+  + YA  N++R + ET  + +Y
Sbjct:   31 GWRVEMEDEHILATNLPKLDGTSFFAVFDGHGGSFTSYYAKGNLVRLLSETESYTKY 87          
BLAST of mRNA_Ecto-sp13_S_contig14607.3537.1 vs. uniprot
Match: A0A7S2PS74_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PS74_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 7.970e-10
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    1 GWRVDMEDSHTIVANVAGLEGHSFVAVFDGHGGALCAAYAGENMMRHVMETAEFAEY 171
            GWRV+MEDSHT+V ++  L    F   +DGHGG+  +AYAG+++M    E  EF +Y
Sbjct:   31 GWRVEMEDSHTLVGSIPALPTMGFFGCYDGHGGSYTSAYAGDHLMNIFSERPEFKQY 87          
BLAST of mRNA_Ecto-sp13_S_contig14607.3537.1 vs. uniprot
Match: A0A7S2WUD6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUD6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.480e-9
Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    1 GWRVDMEDSHTIVANVAGLEGHSFVAVFDGHGGALCAAYAGENMMRHVMETAEFAEY 171
            GWR++MED+HTI  +V GL GHS  AVFDGHGG   A +A E+++  + +  +F  Y
Sbjct:   32 GWRMEMEDAHTIEPDVVGLPGHSLFAVFDGHGGHNAAVFASEHLLPCLTKLDKFKAY 88          
BLAST of mRNA_Ecto-sp13_S_contig14607.3537.1 vs. uniprot
Match: UPI0018A80B51 (LOW QUALITY PROTEIN: probable protein phosphatase 2C T23F11.1 n=1 Tax=Lucilia sericata TaxID=13632 RepID=UPI0018A80B51)

HSP 1 Score: 59.7 bits (143), Expect = 2.310e-9
Identity = 26/56 (46.43%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    1 GWRVDMEDSHTIVANVAGLEGHSFVAVFDGHGGALCAAYAGENMMRHVMETAEFAE 168
            GWR++MEDSHT + ++    G SF AV+DGHGGA  A YAG+++ + +++  E+ E
Sbjct:   31 GWRINMEDSHTHILSLPDDPGTSFFAVYDGHGGATVAQYAGKHLHKFILKRPEYKE 86          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14607.3537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJJ8_ECTSI6.600e-32100.00Protein phosphatase, putative n=1 Tax=Ectocarpus s... [more]
A0A6H5KCZ0_9PHAE2.680e-28100.00PPM-type phosphatase domain-containing protein n=1... [more]
A0A835ZAX4_9STRA5.170e-1659.65Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A835ZBU3_9STRA3.070e-1257.89Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A4D9CRJ3_9STRA9.000e-1253.45PPM-type phosphatase domain-containing protein n=3... [more]
A0A7S2V4V3_9STRA4.450e-1149.12Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6U5FKN3_9STRA3.020e-1049.12Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2PS74_9STRA7.970e-1047.37Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2WUD6_9STRA1.480e-949.12Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
UPI0018A80B512.310e-946.43LOW QUALITY PROTEIN: probable protein phosphatase ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14607contigEcto-sp13_S_contig14607:3134..3307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score109.8
Seed ortholog evalue4e-22
Seed eggNOG ortholog2880.D8LJJ8
Model size174
KEGG koko:K04457,ko:K04461
KEGG Pathwayko04010,ko04013,map04010,map04013
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.manganese ion binding
EggNOG OGsCOG0631@1,KOG0697@2759
EC3.1.3.16
Cds size159
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462780.2774093-UTR-Ecto-sp13_S_contig14607:3133..31481681462780.2774093-UTR-Ecto-sp13_S_contig14607:3133..3148Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14607 3134..3148 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462780.2887459-CDS-Ecto-sp13_S_contig14607:3148..33071681462780.2887459-CDS-Ecto-sp13_S_contig14607:3148..3307Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14607 3149..3307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14607.3537.1prot_Ecto-sp13_S_contig14607.3537.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14607 3149..3307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14607.3537.1

>prot_Ecto-sp13_S_contig14607.3537.1 ID=prot_Ecto-sp13_S_contig14607.3537.1|Name=mRNA_Ecto-sp13_S_contig14607.3537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
MEDSHTIVANVAGLEGHSFVAVFDGHGGALCAAYAGENMMRHVMETAEFA
EYA
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mRNA from alignment at Ecto-sp13_S_contig14607:3134..3307+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14607.3537.1 ID=mRNA_Ecto-sp13_S_contig14607.3537.1|Name=mRNA_Ecto-sp13_S_contig14607.3537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14607:3134..3307+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGTGGCGGGTAGACATGGAGGACTCTCACACCATCGTCGCGAACGTTGC CGGTCTGGAGGGGCATTCGTTCGTGGCGGTCTTCGACGGTCACGGCGGGG CGCTGTGCGCGGCGTATGCCGGGGAGAACATGATGCGGCACGTCATGGAG ACGGCCGAGTTCGCGGAGTACGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14607:3134..3307+

>mRNA_Ecto-sp13_S_contig14607.3537.1 ID=mRNA_Ecto-sp13_S_contig14607.3537.1|Name=mRNA_Ecto-sp13_S_contig14607.3537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14607:3134..3307+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGACTCTCACACCATCGTCGCGAACGTTGCCGGTCTGGAGGGGCA
TTCGTTCGTGGCGGTCTTCGACGGTCACGGCGGGGCGCTGTGCGCGGCGT
ATGCCGGGGAGAACATGATGCGGCACGTCATGGAGACGGCCGAGTTCGCG
GAGTACGCC
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