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Homology
BLAST of mRNA_Ecto-sp13_S_contig146.3533.1 vs. uniprot
Match: A0A6H5K070_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K070_9PHAE) HSP 1 Score: 494 bits (1273), Expect = 2.460e-170 Identity = 301/391 (76.98%), Postives = 312/391 (79.80%), Query Frame = 3
Query: 132 LEWGRRYQEEELLSLRLEIGEVSREVEAETKQLRDREEIIRAIRDEQRQDRIKIQTLLALSQPITPDITVVFQALAPDACPSSLPPPSRAARPLDRSFVSQNNARAVASNSPSRRSVAAAAAATAGTNAGRGVSGEEDRRGVFGDESPVERPRHVERRRIRQQEQRPRRRRYLNDGIGSDGGSGGEQRNPEGERDNXXXXXXXXXXXXAGSDSHTHQEETTGGVSYGLRPGRRWTSERGEGNGGHADRRRGGRGGGAPG-RXXXRPRSGDGGPSLGTRKSREANKLRCTRGYQQHLERRLELTQRHLRELERLEGSYHETLTRDKQEREIHARIQKDNAARVVEALGRRTAEVEKRLSGATDDYLRLRHKAKEAHAVSAEEQRQCSEAREK 1301
L+WGRRYQEEELL+LRLE+GEVS EVEAE KQLRDREEIIRAIRDEQRQDRIKIQTLLALSQPITPDITVVFQALAPDACP LPPPSR ARPLDRS+V QNN RAVASNSPSRRSVAAAAA TAG NAGRG EQRPRRRRYLNDGIGSDG SGGEQ N EGER+ + +EE TGGVSYGL PGRRWTSER GNGGHADRRRGGR GG PG R RPRSGDGG SLGTRKSREAN+L CTRGYQQHLERRLEL +RHLRELERLEGSYHETLTRDKQEREIHAR+Q+DNAARVVEAL RR AEVEKRLSGATDDYLRLRHKAKEAHAVSAEEQRQC EAREK
Sbjct: 13 LQWGRRYQEEELLALRLEVGEVSGEVEAEIKQLRDREEIIRAIRDEQRQDRIKIQTLLALSQPITPDITVVFQALAPDACPPPLPPPSRGARPLDRSYVPQNNRRAVASNSPSRRSVAAAAA-TAGRNAGRG-------------------------------EQRPRRRRYLNDGIGSDGCSGGEQINMEGERN-----------------AGRGEEEATGGVSYGLYPGRRWTSERVGGNGGHADRRRGGREGGVPGSRRRRRPRSGDGGGSLGTRKSREANRL-CTRGYQQHLERRLELNERHLRELERLEGSYHETLTRDKQEREIHARVQRDNAARVVEALERRNAEVEKRLSGATDDYLRLRHKAKEAHAVSAEEQRQCREAREK 353
BLAST of mRNA_Ecto-sp13_S_contig146.3533.1 vs. uniprot
Match: D8LLH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLH3_ECTSI) HSP 1 Score: 347 bits (889), Expect = 1.070e-113 Identity = 231/424 (54.48%), Postives = 240/424 (56.60%), Query Frame = 3
Query: 30 MECYQEVMRAIERERINFLDKIDLVQPSFEEQHQLEWGRRYQEEELLSLRLEIGEVSREVEAETKQLRDREEIIRAIRDEQRQDRIKIQTLLALSQPITPDITVVFQALAPDACPSSLPPPSRAARPLDRSFVSQNNARAVASNSPSRRSVAAAAAATAGTNAGRGVSGEEDRRGVFGDESPVERPRHVERRRIRQQEQRPRRRRYLNDGIGSDGGSGGEQRNPEGERDNXXXXXXXXXXXXAGSDSHTHQEETTGGVSYGLRPGRRWTSERGEGNGGHADRRRGGRGGGAPGRXXXRPRSGDGGPSLGTRKSREANKLRCTRGYQQHLERRLELTQRHLRELERLEGSYHETLTRDKQEREIHARIQKDNAARVVEALGRRTAEVEKRLSGATDDYLRLRHKAKEAHAVSAEEQRQCSEAREK 1301
MECYQE MRAIERERIN L+KIDLVQPSFEEQHQLEWGRRYQEEELL+LRLE+GEVSREVEAETKQLRDREEIIRAIRDEQRQDRIKIQTLLALSQPITPDITVVFQALAPDACP LPPPSR +RPLDRS V QNN RAV SNSPSRRSVAAAA TAGT+AGRG RHLRELERLEGS+HETLTRDKQERE+HAR+QKDNAARV+EALGRRTAEVEKRLSGATDDYLRLRHKAKEAHAVSAE QRQC EAREK
Sbjct: 1 MECYQEAMRAIERERINVLNKIDLVQPSFEEQHQLEWGRRYQEEELLALRLEVGEVSREVEAETKQLRDREEIIRAIRDEQRQDRIKIQTLLALSQPITPDITVVFQALAPDACPPPLPPPSRGSRPLDRSSVPQNNRRAVTSNSPSRRSVAAAA--TAGTSAGRG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------RHLRELERLEGSFHETLTRDKQEREMHARVQKDNAARVMEALGRRTAEVEKRLSGATDDYLRLRHKAKEAHAVSAEGQRQCGEAREK 251
BLAST of mRNA_Ecto-sp13_S_contig146.3533.1 vs. uniprot
Match: A0A835ZIT2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIT2_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 4.880e-5 Identity = 40/110 (36.36%), Postives = 56/110 (50.91%), Query Frame = 3
Query: 81 FLDKIDLVQPSFEEQHQLEWGRRYQEEELL-------SLRLEIGEVSREVEAETKQLRDREEIIRAIRDEQRQDRIKIQTLLALSQPITPDITVVFQALAPDACPSSLPP 389
F +I++VQPS EE+H++EW E EL SLR G + A R I + EQR+DR ++Q LLAL QP++ D+TV+F P + PP
Sbjct: 46 FRKQIEMVQPSQEERHRIEWQLEALERELAVASGEAASLRASTGTAGAAIAA-------RAAAIAELLAEQREDRTRVQRLLALCQPVSHDVTVLFDHFGASEGPRAAPP 148
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 1 |
| Model size | 1301 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-00_004610.1 |
| Cds size | 1272 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462779.959876-UTR-Ecto-sp13_S_contig146:32121..32150 | 1681462779.959876-UTR-Ecto-sp13_S_contig146:32121..32150 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig146 32122..32150 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462779.9683113-CDS-Ecto-sp13_S_contig146:32150..32258 | 1681462779.9683113-CDS-Ecto-sp13_S_contig146:32150..32258 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig146 32151..32258 + |
| 1681462779.9762034-CDS-Ecto-sp13_S_contig146:32991..33132 | 1681462779.9762034-CDS-Ecto-sp13_S_contig146:32991..33132 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig146 32992..33132 + |
| 1681462779.9840546-CDS-Ecto-sp13_S_contig146:33494..34256 | 1681462779.9840546-CDS-Ecto-sp13_S_contig146:33494..34256 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig146 33495..34256 + |
| 1681462779.992041-CDS-Ecto-sp13_S_contig146:35169..35303 | 1681462779.992041-CDS-Ecto-sp13_S_contig146:35169..35303 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig146 35170..35303 + |
| 1681462779.9998796-CDS-Ecto-sp13_S_contig146:35993..36120 | 1681462779.9998796-CDS-Ecto-sp13_S_contig146:35993..36120 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig146 35994..36120 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig146.3533.1 >prot_Ecto-sp13_S_contig146.3533.1 ID=prot_Ecto-sp13_S_contig146.3533.1|Name=mRNA_Ecto-sp13_S_contig146.3533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=424bp
MECYQEVMRAIERERINFLDKIDLVQPSFEEQHQLEWGRRYQEEELLSLR LEIGEVSREVEAETKQLRDREEIIRAIRDEQRQDRIKIQTLLALSQPITP DITVVFQALAPDACPSSLPPPSRAARPLDRSFVSQNNARAVASNSPSRRS VAAAAAATAGTNAGRGVSGEEDRRGVFGDESPVERPRHVERRRIRQQEQR PRRRRYLNDGIGSDGGSGGEQRNPEGERDNDEECEEEEGGDDAGSDSHTH QEETTGGVSYGLRPGRRWTSERGEGNGGHADRRRGGRGGGAPGRRRRRPR SGDGGPSLGTRKSREANKLRCTRGYQQHLERRLELTQRHLRELERLEGSY HETLTRDKQEREIHARIQKDNAARVVEALGRRTAEVEKRLSGATDDYLRL RHKAKEAHAVSAEEQRQCSEAREK back to topmRNA from alignment at Ecto-sp13_S_contig146:32122..36120+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig146.3533.1 ID=mRNA_Ecto-sp13_S_contig146.3533.1|Name=mRNA_Ecto-sp13_S_contig146.3533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3999bp|location=Sequence derived from alignment at Ecto-sp13_S_contig146:32122..36120+ (Ectocarpus species13 EcNAP12_S_4_19m) CCTCAAGGCCGTCCACGACAGCCAGGACGATGGAGTGCTACCAGGAGGTG
ATGCGCGCGATAGAGAGGGAGCGCATAAACTTTTTGGACAAGATCGACCT
GGTTCAGCCTTCCTTCGAGGAGCAGCATCAACTCGAGGTGGGCAGTAATC
AAACGTAAAATACCCAACGGTTTCCACTATCTACAGCAGTGTAATTGTTT
TCTCTCGACAGCACAGATACTTCATGGCGGCATGATGCTCCCGGGCGCTA
GACTCTCTCACGTGTCAGCACAACGAGAGCTACGTGGGCGTGTCACCTGA
GCACAACTTTTAGCGGTGATGTTCGCTGTTCAGAACACATAAAGTGTGTG
TGTGTGCGGTCTGTTTGGTCTCCGAGAATGAAGTCAAGCACACAGCGATC
ACGCGCTAAGAAAGAAGCCTCGCCAACGTTGTTCCCAGTGCGTGCGGCTG
TGTTTCTTGGGCCATGTCGCGAGTGCCACATTCGAAGCAGTCCACGAAAG
CATTGGGTGTTGGAACGTTGGCTTTCCTTCCGATCTAGCAAATAGCCCAC
AGATCTTGGCGTAGCGATATGGTAAAGCTTACCAACTGGAGTGGACGACG
AACTCCGCACACATGCTACACTCCTCACAGTAAACATCACCCATTGTTGC
TTATAGAAGGACCTTCGGAAGTGTGCGAAGCGGGCGCGTTCTGCTCTCTA
GACCAGGCAGTACCTGTAGCTGCCGTAGAGGATCGTCGGAGATCAAGGCA
GATTGGGGAGGGGGTACGGCTGCCAGGTTCAAAGCACTGCAAAGCAGCAT
CTGCCGCGAACGCTGCTTTGTGCACCTGATGACCATCCTTGCTTCAACTC
TGTTAAACTGTTGTCTGCAGTGGGGGCGCCGTTACCAGGAGGAAGAGCTT
CTATCCCTGCGGTTGGAGATCGGTGAGGTCTCGAGAGAGGTGGAAGCGGA
GACAAAGCAGCTTCGAGACAGGGAGGAGATCATCCGGGCCATCCGTGACG
AGCAACGACAGGTACGGCCCTATGTGGGGATAGGTTCTACCCGTGCGGTG
AGGCCGTGGAGAGACTCGTCCCCACCCCCCGCCCCTCGGCGTCGGTCAAT
GAGGCACCGCTTTTCGCCATTATGAGGAAAAGCGGCAGTTTGGCCGGGTG
GCGTCTGAGTGCTCTGGTCGTGGTGGCTATTCGTCACTACTGTTGATGTT
GGTTTGCTCGACTTTATCTTGTGTACCAATTTGTAGTGCAGCAAGCCCCT
GCCTCAAGTCGGACCCGAATACATACACGTGCCCCAAAATGCAACAATAC
TGCTGTACGCCCAGTTTTCTCTTTCCGTGTTCGCTGTGCAATCACCACCG
CCCCGCCCCGCCAACCCGTGCAGGACCGGATAAAAATCCAGACGTTACTC
GCCCTGTCTCAGCCCATCACGCCGGACATCACCGTGGTATTCCAGGCTTT
GGCGCCCGACGCCTGCCCCTCGTCCTTGCCACCGCCGTCGAGAGCTGCTC
GACCCCTCGATAGGTCGTTTGTCTCTCAAAACAATGCAAGAGCGGTAGCT
TCGAACTCGCCTTCACGCAGGAGTGTTGCGGCGGCGGCGGCGGCGACAGC
CGGGACGAATGCTGGGCGAGGTGTAAGTGGAGAGGAAGATAGAAGAGGCG
TTTTTGGAGACGAAAGTCCTGTCGAACGCCCAAGACACGTTGAACGTCGT
AGAATCAGGCAGCAGGAGCAGCGGCCGCGGCGACGGCGGTACTTGAACGA
CGGTATCGGCAGCGACGGGGGCAGCGGTGGGGAACAAAGAAATCCGGAGG
GAGAAAGGGATAACGACGAAGAGTGCGAGGAGGAAGAAGGTGGCGATGAT
GCCGGCAGTGATAGCCACACACATCAAGAGGAGACGACTGGAGGGGTGAG
CTACGGGTTGCGTCCGGGACGGCGATGGACCTCGGAGAGAGGGGAGGGAA
ATGGAGGCCACGCAGACAGAAGAAGGGGGGGGAGGGGGGGAGGAGCTCCT
GGCAGGAGGAGGAGGAGGCCGAGAAGTGGCGACGGTGGGCCCAGTCTAGG
CACGAGAAAAAGCAGGGAGGCGAACAAGCTGAGGTGTACCCGGGGATATC
AACAGCATCTGGAACGAAGATTGGAACTCACCCAGGTTCGTCGGCAGAAT
ACGTTGCCTCCCCCCCCCCAGAACCCACAATGAGTGTACGGTGAAAAAGA
CACAAATCGCCCTTGATGGACATTTGGGAATGTAAGTTCTTTTGAACAAA
TCACTTGTAAATGTTTCTACACGACTTTGTGCTACATCGGGGGTCACAGT
ATTTCGGGCTACGGTGCATACCACCGTCTCGCCACCTAGAAGAAGCTATC
TACCGCAGAGTCATCAGGAAAAAACAATCGTCCGCAAGCGCCTTCCTTGA
TCTTTCGAACAGTCTCCACAAGGTTGGAGGAAAATGTGTTGCCATCAGGA
GTGTGCGCTCCTCAACAATTGTGGAGGTGGCAGTGCGACTGCTCCACTTT
TCTAGAACTGGAGTAGTCACGGGTGCATTCTGCTAACGTAGCTCAACTAG
GGTGAATTTCTGGTGATGTCGTCCACTCTGTTTTAGCGGATCTGATGCGT
GCATTTTGGTGCTGAGAGCTACGAAGACGAGGTTTCAAGTATGTAGCAGG
GCTCACAAAGGTTATGACATGTCATTTGTCCACAATCAATCCCCTCTGGA
CACAGAACAGGACGGTTTTAGGCTTCCTGCTGATTTCATGACAAGCGCGG
TTTATCTGAGTTGCATCAGCGGTGACAAAAGCCTTGGTCGAATTAATCGT
CAGCGGCAACAGAGGGGATGAGGTGAAGGGAATGATTCCTACAAGAAGCA
AGAGCTTTCGACAACGCAGAAATCTGTTGTTTTTGAATTGTGCTCGGCTG
AAACACGCGTGGCACAGACAGTCTTCATCCCTGGGGCAGGGTCCGGGGGT
AAGCTCCGTGAGGCCCTCTTCTCCCAGTTGCCAGAACTGTTTTCGCCACC
TCATACGTCTTGCCTATGCTCCTTGCTCGACTGCGTTTTGATTCCTAGCG
GCACTTGCGGGAACTGGAGCGCCTCGAAGGTTCGTACCACGAAACGCTAA
CCAGGGATAAGCAGGAGAGAGAGATACATGCTCGGATTCAGAAGGACAAC
GCCGCCCGCGTTGTCGAAGCCCTGGGACGGAGGTGAGTCGAAGCTGTTAA
ACACAGTGGCGGCATGTGTCATCAGTCTTACACAATTCTTGTTGGCGTTG
AAGGCGTCTTGGTTGCGGAGCAATGGATTTTTCGCGCGCCCATGAGTTCG
GCCGCACGTTTTACATCGCAACCTTGTGAATCTCTAGATTGAGGGTTCGA
ATCCCTCCGGAGTGAAAATTCGAACAATAATTATTGTAGAGGTTTCGAGA
GCATGGTCGTGAGTAAACACGAAAACGAGGGAAGATCCAACTGTTGAACC
CTTCGCGTTCGAATTAAAGGCAAGTAAGGGGAACAGGCGTTGAAAAAAGA
ATAAAAAATACGGTGTTTAACTCCCTCCCATGCGCCCCGAACTACTGTGT
CAAACATAGCTAAATTCGGTATCGATCGTCGCCCAAAATAGATGAGACGA
AAACAATAACACAGCAACAATGTAATGATGGTTTGAGCTTGTTTTGTCGC
TTATTCAGGAAGCGTGTGAAATTTATTTCCGTGTGCACACCTGGTATTTA
ATTTTTGTGTGTATGTCTGTGATTGTTGCCTGTTTTTTCTCGCATCGAGC
ACGCTCATCCTGTAGGCTGATATTATGAAAAGACGTCGGTCTTGTCAGTG
CGGCTGAAAACACAAAGCGCTCCTGAAGGCCATCATCGGCTTTTTGTGTG
GGCACAATCGTGTTGGTTGCAGGACCGCCGAGGTGGAGAAGCGGTTATCC
GGGGCAACCGACGACTACCTTCGTTTGAGACACAAGGCAAAAGAGGCTCA
CGCCGTGTCTGCGGAGGAGCAAAGGCAGTGCAGCGAGGCGCGGGAAAAG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig146:32122..36120+ >mRNA_Ecto-sp13_S_contig146.3533.1 ID=mRNA_Ecto-sp13_S_contig146.3533.1|Name=mRNA_Ecto-sp13_S_contig146.3533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1272bp|location=Sequence derived from alignment at Ecto-sp13_S_contig146:32122..36120+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGGAGTGCTACCAGGAGGTGATGCGCGCGATAGAGAGGGAGCGCATAAA CTTTTTGGACAAGATCGACCTGGTTCAGCCTTCCTTCGAGGAGCAGCATC AACTCGAGTGGGGGCGCCGTTACCAGGAGGAAGAGCTTCTATCCCTGCGG TTGGAGATCGGTGAGGTCTCGAGAGAGGTGGAAGCGGAGACAAAGCAGCT TCGAGACAGGGAGGAGATCATCCGGGCCATCCGTGACGAGCAACGACAGG ACCGGATAAAAATCCAGACGTTACTCGCCCTGTCTCAGCCCATCACGCCG GACATCACCGTGGTATTCCAGGCTTTGGCGCCCGACGCCTGCCCCTCGTC CTTGCCACCGCCGTCGAGAGCTGCTCGACCCCTCGATAGGTCGTTTGTCT CTCAAAACAATGCAAGAGCGGTAGCTTCGAACTCGCCTTCACGCAGGAGT GTTGCGGCGGCGGCGGCGGCGACAGCCGGGACGAATGCTGGGCGAGGTGT AAGTGGAGAGGAAGATAGAAGAGGCGTTTTTGGAGACGAAAGTCCTGTCG AACGCCCAAGACACGTTGAACGTCGTAGAATCAGGCAGCAGGAGCAGCGG CCGCGGCGACGGCGGTACTTGAACGACGGTATCGGCAGCGACGGGGGCAG CGGTGGGGAACAAAGAAATCCGGAGGGAGAAAGGGATAACGACGAAGAGT GCGAGGAGGAAGAAGGTGGCGATGATGCCGGCAGTGATAGCCACACACAT CAAGAGGAGACGACTGGAGGGGTGAGCTACGGGTTGCGTCCGGGACGGCG ATGGACCTCGGAGAGAGGGGAGGGAAATGGAGGCCACGCAGACAGAAGAA GGGGGGGGAGGGGGGGAGGAGCTCCTGGCAGGAGGAGGAGGAGGCCGAGA AGTGGCGACGGTGGGCCCAGTCTAGGCACGAGAAAAAGCAGGGAGGCGAA CAAGCTGAGGTGTACCCGGGGATATCAACAGCATCTGGAACGAAGATTGG AACTCACCCAGCGGCACTTGCGGGAACTGGAGCGCCTCGAAGGTTCGTAC CACGAAACGCTAACCAGGGATAAGCAGGAGAGAGAGATACATGCTCGGAT TCAGAAGGACAACGCCGCCCGCGTTGTCGAAGCCCTGGGACGGAGGACCG CCGAGGTGGAGAAGCGGTTATCCGGGGCAACCGACGACTACCTTCGTTTG AGACACAAGGCAAAAGAGGCTCACGCCGTGTCTGCGGAGGAGCAAAGGCA GTGCAGCGAGGCGCGGGAAAAG back to top
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