mRNA_Ecto-sp13_S_contig1459.3520.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1459.3520.1
Unique NamemRNA_Ecto-sp13_S_contig1459.3520.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1459.3520.1 vs. uniprot
Match: A0A6H5KDJ3_9PHAE (Eukaryotic translation initiation factor 6 n=2 Tax=PX clade TaxID=569578 RepID=A0A6H5KDJ3_9PHAE)

HSP 1 Score: 349 bits (896), Expect = 3.420e-115
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 2 
Query:  245 GNKRGLLVPNTTTDQELQHLRNALPDSVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDLVADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT 787
            GNKRGLLVPNTTTDQELQHLRNALPDSVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDL+ADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT
Sbjct:   65 GNKRGLLVPNTTTDQELQHLRNALPDSVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDLLADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT 245
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BLAST of mRNA_Ecto-sp13_S_contig1459.3520.1 vs. uniprot
Match: A0A4D9D8K6_9STRA (Eukaryotic translation initiation factor 6 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8K6_9STRA)

HSP 1 Score: 311 bits (797), Expect = 2.850e-100
Identity = 156/184 (84.78%), Postives = 175/184 (95.11%), Query Frame = 2 
Query:  236 RVT-GNKRGLLVPNTTTDQELQHLRNALPDSVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDLVADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSL 784
            RVT GNKRGLLVP+TTTDQELQH+RN+LPD+VV+QRVEERLSALGNCIV NDHVALVHTDLDRETE+++ADVLGVEVFRQTIAGNALVGSY+ ITNQGGMVHP+T++ED+EELSSLLQIPLVAGTVNRGSDVLGAG+VANDW AFCGLDTTSTEISVVESIFKL +  P N+V ++R+SLIDSL
Sbjct:   61 RVTIGNKRGLLVPSTTTDQELQHIRNSLPDAVVVQRVEERLSALGNCIVANDHVALVHTDLDRETEEILADVLGVEVFRQTIAGNALVGSYSYITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTVNRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDNMPVNVVKTLRTSLIDSL 244
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BLAST of mRNA_Ecto-sp13_S_contig1459.3520.1 vs. uniprot
Match: W7UBL7_9STRA (Eukaryotic translation initiation factor 6 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBL7_9STRA)

HSP 1 Score: 312 bits (800), Expect = 1.150e-99
Identity = 157/184 (85.33%), Postives = 175/184 (95.11%), Query Frame = 2 
Query:  236 RVT-GNKRGLLVPNTTTDQELQHLRNALPDSVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDLVADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSL 784
            RVT GNKRGLLVP+TTTDQELQH+RN+LPD+VV+QRVEERLSALGNCIV NDHVALVHTDLDRETE++VADVLGVEVFRQTIAGNALVGSY+ ITNQGGMVHP+T++ED+EELSSLLQIPLVAGTVNRGSDVLGAG+VANDW AFCGLDTTSTEISVVESIFKL +  P N+V ++R+SLIDSL
Sbjct:  133 RVTIGNKRGLLVPSTTTDQELQHIRNSLPDAVVVQRVEERLSALGNCIVANDHVALVHTDLDRETEEIVADVLGVEVFRQTIAGNALVGSYSYITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTVNRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDNMPVNVVKTLRTSLIDSL 316
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BLAST of mRNA_Ecto-sp13_S_contig1459.3520.1 vs. uniprot
Match: H3G8Q6_PHYRM (Eukaryotic translation initiation factor 6 n=27 Tax=Oomycota TaxID=4762 RepID=H3G8Q6_PHYRM)

HSP 1 Score: 303 bits (775), Expect = 5.790e-97
Identity = 149/185 (80.54%), Postives = 169/185 (91.35%), Query Frame = 2 
Query:  233 RRVTGNKRGLLVPNTTTDQELQHLRNALPDSVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDLVADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT 787
            R   GNKRGLL+P+TTTDQE+QH+RNALPDSVV+QRVEERLSALGNCI TNDHVALVHTDLDRETE++VAD LGVEVFRQT+AGNALVGSY+ ++NQG +VHPRTS+ED EELSSLLQ+P+VAGTVNRGSDV+GAG+V NDWTAFCGLDTTSTEISVVESIFKL    P+ I  SMRS+LIDS+T
Sbjct:   61 RVAVGNKRGLLLPSTTTDQEMQHIRNALPDSVVVQRVEERLSALGNCIATNDHVALVHTDLDRETEEIVADTLGVEVFRQTVAGNALVGSYSALSNQGCLVHPRTSVEDQEELSSLLQVPVVAGTVNRGSDVIGAGLVVNDWTAFCGLDTTSTEISVVESIFKLQNAQPTAIATSMRSALIDSMT 245
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BLAST of mRNA_Ecto-sp13_S_contig1459.3520.1 vs. uniprot
Match: A0A7S2R9W4_9STRA (Eukaryotic translation initiation factor 6 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9W4_9STRA)

HSP 1 Score: 304 bits (779), Expect = 2.190e-96
Identity = 151/187 (80.75%), Postives = 171/187 (91.44%), Query Frame = 2 
Query:  227 ITRRVTGNKRGLLVPNTTTDQELQHLRNALPDSVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDLVADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT 787
            I R   GN+RGLLVP+  TD ELQHLRN+LPD VVIQRVEERLSALGNCIV NDHVALVHTDLDRETED+VADVLGVEVFRQT+AGNALVGSY  I+NQGG+VHPRTS+ED+EELS+LLQ+PLVAGTVNRGSDVLGAG+V NDW+AFCGLDTTSTEISV+E+IF+LNE GP+ IV+ +RSSL+D LT
Sbjct:  140 IGRTTVGNRRGLLVPSNCTDGELQHLRNSLPDGVVIQRVEERLSALGNCIVANDHVALVHTDLDRETEDIVADVLGVEVFRQTVAGNALVGSYCRISNQGGIVHPRTSVEDMEELSALLQVPLVAGTVNRGSDVLGAGMVVNDWSAFCGLDTTSTEISVMEAIFRLNEAGPAAIVSDLRSSLMDQLT 326
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BLAST of mRNA_Ecto-sp13_S_contig1459.3520.1 vs. uniprot
Match: A0A482RUG4_9ARCH (Translation initiation factor 6 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUG4_9ARCH)

HSP 1 Score: 297 bits (761), Expect = 7.360e-95
Identity = 148/185 (80.00%), Postives = 167/185 (90.27%), Query Frame = 2 
Query:  236 RVT-GNKRGLLVPNTTTDQELQHLRNALPDSVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDLVADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT 787
            RVT GNKRGLLVP+T TD ELQHLRNALP+S+VIQRVEERLSALGNCIVTNDHVALVHTD+DRETED++ADVLGVEVFRQT+AGNALVGSY  I+NQGG+VHPRT++ED+EELSSLLQ+PLVAGTVNRGSDV+GAG+V NDW AFCG+DTTSTE+SVVE IF+L       I   MRSSLIDSL+
Sbjct:   61 RVTVGNKRGLLVPSTCTDTELQHLRNALPESIVIQRVEERLSALGNCIVTNDHVALVHTDIDRETEDIIADVLGVEVFRQTVAGNALVGSYCKISNQGGLVHPRTTVEDLEELSSLLQVPLVAGTVNRGSDVVGAGLVVNDWAAFCGMDTTSTELSVVEGIFRLGGNDAQRIAKDMRSSLIDSLS 245
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BLAST of mRNA_Ecto-sp13_S_contig1459.3520.1 vs. uniprot
Match: D8R476_SELML (Eukaryotic translation initiation factor 6 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R476_SELML)

HSP 1 Score: 297 bits (760), Expect = 1.040e-94
Identity = 145/186 (77.96%), Postives = 168/186 (90.32%), Query Frame = 2 
Query:  227 ITRRVTGNKRGLLVPNTTTDQELQHLRNALPDSVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDLVADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSL 784
            I R   GNK GLL+PN+TTDQEL H+RN+LPD VV+QRVEERLSALGNCI TND+V+LVHTDLD+ETE+LVADVLGVEVFRQTIAGN LVGSY V +N+GG+VHP TSIED++ELSSLLQ+PLVAGTVNRGSDV+GAG++ NDWTAFCGLDTT+TE+SVVES+FKL E  PS IVN MR+SLID+L
Sbjct:   59 IGRMCVGNKNGLLLPNSTTDQELLHIRNSLPDRVVVQRVEERLSALGNCIATNDYVSLVHTDLDKETEELVADVLGVEVFRQTIAGNVLVGSYGVFSNRGGLVHPHTSIEDLDELSSLLQVPLVAGTVNRGSDVIGAGLIVNDWTAFCGLDTTTTELSVVESVFKLRESQPSAIVNEMRASLIDTL 244
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BLAST of mRNA_Ecto-sp13_S_contig1459.3520.1 vs. uniprot
Match: A0A7S2BNU0_9STRA (Eukaryotic translation initiation factor 6 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BNU0_9STRA)

HSP 1 Score: 297 bits (761), Expect = 1.310e-94
Identity = 147/187 (78.61%), Postives = 166/187 (88.77%), Query Frame = 2 
Query:  227 ITRRVTGNKRGLLVPNTTTDQELQHLRNALPDSVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDLVADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT 787
            I R   GN+RGLLVP+T TDQELQ+LRN LPD VVIQRVEERLSALGNCI  NDHVALVHTD+DRETED+++DVLGV+VFRQT+AGNALVGSY   +N GGMVHPRT IED+EELS+LLQ+PLVAGTVNRGSDVLGAG+V NDWTAF GLDTTSTE+SV+E+IFKL EQGPS IV  +RSSL+D LT
Sbjct:   76 IGRTTVGNRRGLLVPSTCTDQELQYLRNCLPDGVVIQRVEERLSALGNCIAANDHVALVHTDIDRETEDIISDVLGVDVFRQTVAGNALVGSYCRFSNVGGMVHPRTPIEDMEELSALLQVPLVAGTVNRGSDVLGAGMVVNDWTAFTGLDTTSTEVSVIEAIFKLQEQGPSAIVTDLRSSLLDQLT 262
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BLAST of mRNA_Ecto-sp13_S_contig1459.3520.1 vs. uniprot
Match: A8HUE0_CHLRE (Eukaryotic translation initiation factor 6 n=9 Tax=Chlamydomonadales TaxID=3042 RepID=A8HUE0_CHLRE)

HSP 1 Score: 296 bits (759), Expect = 1.470e-94
Identity = 139/184 (75.54%), Postives = 168/184 (91.30%), Query Frame = 2 
Query:  233 RRVTGNKRGLLVPNTTTDQELQHLRNALPDSVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDLVADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSL 784
            R   GN+ GLL+PNTT+DQELQH+RN LPD VV+QR++ERLSALGNCIV ND+VAL+H D+DRETE++VADVLGVEVFRQT+AGN LVGSYA +TNQGG+VHP+TSIED++ELSSLLQIPLVAGT+NRGSDV+GAG+VANDW AFCGLDTTSTE+SV+ES+FKL +  P NIVN +R+SLID++
Sbjct:   61 RLTVGNRNGLLLPNTTSDQELQHIRNCLPDEVVVQRIDERLSALGNCIVCNDYVALIHPDIDRETEEIVADVLGVEVFRQTVAGNVLVGSYAALTNQGGLVHPKTSIEDLDELSSLLQIPLVAGTINRGSDVIGAGLVANDWAAFCGLDTTSTELSVIESVFKLRDAQPMNIVNDLRASLIDTM 244
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BLAST of mRNA_Ecto-sp13_S_contig1459.3520.1 vs. uniprot
Match: A9NTP3_PICSI (Eukaryotic translation initiation factor 6 n=2 Tax=Pinidae TaxID=3313 RepID=A9NTP3_PICSI)

HSP 1 Score: 295 bits (756), Expect = 4.150e-94
Identity = 142/183 (77.60%), Postives = 166/183 (90.71%), Query Frame = 2 
Query:  233 RRVTGNKRGLLVPNTTTDQELQHLRNALPDSVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDLVADVLGVEVFRQTIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDS 781
            R   GNK G L+PNTTTDQELQHLRN+LPD VV+QRVEERLSALGNC+V NDHVAL+HTDLDRETE+L+ADVLGVEVFRQTIAGN LVGSY V++N+GG+VHP TSIED++ELS+LLQ+PLVAGTVNRGS+V+GAG++ NDWTAFCGLDTT+TE+SVVES+FKL E  PS IV+ MR SLID+
Sbjct:   61 RLCAGNKNGPLLPNTTTDQELQHLRNSLPDKVVVQRVEERLSALGNCVVCNDHVALIHTDLDRETEELIADVLGVEVFRQTIAGNILVGSYCVLSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGMIVNDWTAFCGLDTTATELSVVESVFKLRESQPSAIVDEMRKSLIDT 243
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1459.3520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDJ3_9PHAE3.420e-11599.45Eukaryotic translation initiation factor 6 n=2 Tax... [more]
A0A4D9D8K6_9STRA2.850e-10084.78Eukaryotic translation initiation factor 6 n=1 Tax... [more]
W7UBL7_9STRA1.150e-9985.33Eukaryotic translation initiation factor 6 n=1 Tax... [more]
H3G8Q6_PHYRM5.790e-9780.54Eukaryotic translation initiation factor 6 n=27 Ta... [more]
A0A7S2R9W4_9STRA2.190e-9680.75Eukaryotic translation initiation factor 6 n=1 Tax... [more]
A0A482RUG4_9ARCH7.360e-9580.00Translation initiation factor 6 n=1 Tax=archaeon T... [more]
D8R476_SELML1.040e-9477.96Eukaryotic translation initiation factor 6 n=2 Tax... [more]
A0A7S2BNU0_9STRA1.310e-9478.61Eukaryotic translation initiation factor 6 n=1 Tax... [more]
A8HUE0_CHLRE1.470e-9475.54Eukaryotic translation initiation factor 6 n=9 Tax... [more]
A9NTP3_PICSI4.150e-9477.60Eukaryotic translation initiation factor 6 n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1459contigEcto-sp13_S_contig1459:309..2840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score306.6
Seed ortholog evalue1.1e-80
Seed eggNOG ortholog36331.EPrPI00000018952
Preferred nameEIF6
Model size1581
KEGG koko:K03264,ko:K03440
KEGG TC1.A.6.1.4,1.A.6.2,1.A.6.4,1.A.6.5
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000054,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0001101,GO:0002682,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005638,GO:0005652,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005856,GO:0005882,GO:0006109,GO:0006110,GO:0006139,GO:0006140,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007275,GO:0008104,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009737,GO:0009790,GO:0009791,GO:0009793,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010033,GO:0010154,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010565,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016072,GO:0016441,GO:0016458,GO:0017148,GO:0019216,GO:0019217,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030687,GO:0030808,GO:0030811,GO:0031047,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032868,GO:0032870,GO:0032991,GO:0033036,GO:0033750,GO:0033993,GO:0034248,GO:0034249,GO:0034250,GO:0034399,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0035194,GO:0035195,GO:0035278,GO:0040029,GO:0040033,GO:0042221,GO:0042254,GO:0042255,GO:0042256,GO:0042273,GO:0042304,GO:0042325,GO:0042886,GO:0043021,GO:0043022,GO:0043023,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043467,GO:0043470,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045111,GO:0045184,GO:0045595,GO:0045637,GO:0045652,GO:0045727,GO:0045974,GO:0046483,GO:0046890,GO:0046907,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051193,GO:0051196,GO:0051234,GO:0051236,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0060255,GO:0061458,GO:0062012,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0070925,GO:0071166,GO:0071215,GO:0071229,GO:0071310,GO:0071396,GO:0071426,GO:0071428,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097305,GO:0097306,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1900371,GO:1900542,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1901701,GO:1902626,GO:1903578,GO:1903706,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000377,GO:2001169
Exons3
EggNOG free text desc.Eukaryotic translation initiation factor 6
EggNOG OGs1MARB@121069,COG1976@1,KOG3185@2759
Ec32 ortholog descriptionTranslation initiation factor IF6
Ec32 orthologEc-26_000880.1
Cds size768
COG Functional cat.J
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03012,ko04040
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462778.8440766-UTR-Ecto-sp13_S_contig1459:308..3301681462778.8440766-UTR-Ecto-sp13_S_contig1459:308..330Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1459 309..330 +
1681462778.8858278-UTR-Ecto-sp13_S_contig1459:2049..28401681462778.8858278-UTR-Ecto-sp13_S_contig1459:2049..2840Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1459 2050..2840 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462778.8557072-CDS-Ecto-sp13_S_contig1459:330..7291681462778.8557072-CDS-Ecto-sp13_S_contig1459:330..729Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1459 331..729 +
1681462778.8650303-CDS-Ecto-sp13_S_contig1459:1139..13041681462778.8650303-CDS-Ecto-sp13_S_contig1459:1139..1304Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1459 1140..1304 +
1681462778.8740869-CDS-Ecto-sp13_S_contig1459:1845..20491681462778.8740869-CDS-Ecto-sp13_S_contig1459:1845..2049Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1459 1846..2049 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1459.3520.1prot_Ecto-sp13_S_contig1459.3520.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1459 331..2049 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1459.3520.1

>prot_Ecto-sp13_S_contig1459.3520.1 ID=prot_Ecto-sp13_S_contig1459.3520.1|Name=mRNA_Ecto-sp13_S_contig1459.3520.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=256bp
MAWSIFHDEETQFLVNTRESSHLFEGRKRVSEHGPLSHTCLPHSPYLPDR
LITRFKSQPLPPLTSATTITRRVTGNKRGLLVPNTTTDQELQHLRNALPD
SVVIQRVEERLSALGNCIVTNDHVALVHTDLDRETEDLVADVLGVEVFRQ
TIAGNALVGSYAVITNQGGMVHPRTSIEDIEELSSLLQIPLVAGTVNRGS
DVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSL
IDSLT*
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mRNA from alignment at Ecto-sp13_S_contig1459:309..2840+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1459.3520.1 ID=mRNA_Ecto-sp13_S_contig1459.3520.1|Name=mRNA_Ecto-sp13_S_contig1459.3520.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2532bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1459:309..2840+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCGCACGCCCCTCAGACAGGATGGCTTGGTCGATATTCCATGACGAAG
AAACACAGTTTTTAGTTAACACGCGCGAATCTTCACATTTATTTGAAGGC
CGAAAACGTGTCAGCGAACATGGACCTCTTTCGCACACCTGTTTACCCCA
CTCCCCTTACCTTCCCGATCGTCTGATTACACGCTTCAAATCGCAACCTC
TTCCCCCGCTCACTTCTGCCACAACAATCACCCGCCGCGTCACAGGCAAC
AAGCGGGGGCTGCTGGTTCCCAACACTACGACAGACCAGGAGTTGCAGCA
TCTCCGAAATGCTTTGCCCGACTCGGTCGTGATCCAGAGGGTCGAGGAGC
GCCTGTCCGCTCTGGGGAACTGCATCGTCACTAACGACCACGTGGCACTG
GTGCATACGGACCTCGACCGGGTGAGCGAGCACGCAGATCGCTTTCGCAA
GCGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGGAAG
AGGGCGGGGGGGGGGGAGAGAGAGAGGCTGGCGTACACTCTCAAACGGGG
AGTTTTTCAGGGTGATCGTGTGTATTTTTGCTTCTACGATTCTGCACCCC
ATCGCGAATTTTTGCCGAACTTCGACCACTTGGTGCTCTGCGCGCTGCTC
GGGTGTTGTCTGTGGTGGCCTTGTTTACTCCATGTTTGCGGGGTGTCCTA
CATCTACCTCCGGTGACGAGAGTTTGCATCGACAATGGCGTTTGTTTACG
CCCAGGCGTTGTTGACACCTGACAATATTGTGCCCTCCTCGCTGACGACT
CAACGCATGCCCTTACCGACACTCGCGGCAGGAGACGGAGGACTTGGTAG
CTGATGTTCTTGGGGTTGAGGTGTTCAGGCAAACAATCGCGGGCAACGCG
TTGGTCGGGAGCTACGCGGTGATCACCAACCAGGGGGGCATGGTGCACCC
GCGGACTTCCATCGAGGACATCGAGGAGCTGTCGAGCCTGCTCCAGGTGA
CCAGTCTGCCTCTTCCCTTCCCTCTACATAGAGCACAGAGCACGTGATCG
CGGTTGTTCACTTCTCTAGGTAGTTTTACTTTTTCCTTGAACATGCCCGC
TGTTCGCATCCTCTACAACCCCTCAATCATGGAAACCAACGCTTGTCGGG
AGCGTTTTTGCCACTTACTCATGGGTACTTTGTAGGAGCTGCCCCGGTGG
GCATGCGAGGCTCACACGGTGGGGCGCCAGCTCTGCGTTTTTTATCACCT
ACACATACCGGGTGGGAATGGTCCACGCGTTTCTTGTGCTCGGCATGTTG
CCGTTGCCGTGCTGTGCGCTATCCCGATCTACTTTCTTTTTGGTGTACTT
AACGGTGTACATTGTTCACACTGCTGAAAAAGAGCATCATGCTCCCAAGC
ACAACGTTCGTGGTTTTCATTGCCACCACCCCTTTCGGTTGATGAATCAT
TTGACCTATACTCACCCCGCTCGCCCCCCCCTGCCCCCCGACCCCTCTCC
AAACGGCGGCGTCTTCCTTTTCGACCTGCCCCTCCAGATCCCATTAGTGG
CGGGAACAGTGAACAGAGGGTCTGACGTGCTAGGAGCGGGGGTGGTTGCT
AACGACTGGACGGCGTTTTGCGGGCTGGACACGACATCTACGGAGATCAG
CGTCGTAGAGTCCATCTTCAAGCTCAACGAGCAAGGCCCCTCCAACATCG
TCAACAGCATGCGAAGCTCTCTCATCGACTCGCTGACATGACCCTGTCAA
AAGTTGACAACAAACAAGTTTTTTATCGAAAGTGTTGGGGGCGGAAGACG
CCGGAGACGTTAGCCGACGAAGGACCTGCTTGGTCGGACCTTGTTGTTGG
AGACAAGACATTTTTGGAACATGTGGTTCTAGGAAGGCGCAATCGACAAC
TGTCAGCAACCGACAAAAGACATTTTTGGAACATGCGATTGAGGAGCAAT
CGACATCGGTTAGCAATCGGTTGTATCGGCGCAACAGGCAGCTGAAGGCG
TTGATTGCCGAACAGAACGTGGAGACTCGTGTGTGCGTACACCCATGATG
TGCCCCCACGCCACGTAGCCCCCGATAGCCCCCGAACTAGGTAGGCAGTG
CGTTCGCGCGCCAGCGGATTGCTTGAAGCGCACGCGGCTCCAACGTTGAT
CTTAACATCGAATGTGGTTCGTGAGAGTTGGGTCGCGATGTAGATACACC
CAGCAGAGAGAGAGAGAAAAAATATGATACACGGCGGTTTCTACGTACAT
AGTTCGAAGGCTTTTTCTACCTCCCGTTGCTGAAAAAGGCATGGCCTACC
AGGAACTTGTGTCGTGTAGGATAGGACCGCCAACATGACGGTATGGGTGG
TAGTGTTAAAAGCGTTTGGTTGTCCATGGGCCTTGCATTTTGGATAATAA
TCTTCGGCCTGCTTTTCTCGTTTCCTCGTGTTTTTTGTTGTGCTAATGGC
GTTGAGGCAATCGCGCAGTTGACTTCGCACGTTTCCGCCTTCACTCAACA
GAGGCTCTGTGACCGCACGCCCAGAGGGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1459:309..2840+

>mRNA_Ecto-sp13_S_contig1459.3520.1 ID=mRNA_Ecto-sp13_S_contig1459.3520.1|Name=mRNA_Ecto-sp13_S_contig1459.3520.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=768bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1459:309..2840+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTGGTCGATATTCCATGACGAAGAAACACAGTTTTTAGTTAACAC
GCGCGAATCTTCACATTTATTTGAAGGCCGAAAACGTGTCAGCGAACATG
GACCTCTTTCGCACACCTGTTTACCCCACTCCCCTTACCTTCCCGATCGT
CTGATTACACGCTTCAAATCGCAACCTCTTCCCCCGCTCACTTCTGCCAC
AACAATCACCCGCCGCGTCACAGGCAACAAGCGGGGGCTGCTGGTTCCCA
ACACTACGACAGACCAGGAGTTGCAGCATCTCCGAAATGCTTTGCCCGAC
TCGGTCGTGATCCAGAGGGTCGAGGAGCGCCTGTCCGCTCTGGGGAACTG
CATCGTCACTAACGACCACGTGGCACTGGTGCATACGGACCTCGACCGGG
AGACGGAGGACTTGGTAGCTGATGTTCTTGGGGTTGAGGTGTTCAGGCAA
ACAATCGCGGGCAACGCGTTGGTCGGGAGCTACGCGGTGATCACCAACCA
GGGGGGCATGGTGCACCCGCGGACTTCCATCGAGGACATCGAGGAGCTGT
CGAGCCTGCTCCAGATCCCATTAGTGGCGGGAACAGTGAACAGAGGGTCT
GACGTGCTAGGAGCGGGGGTGGTTGCTAACGACTGGACGGCGTTTTGCGG
GCTGGACACGACATCTACGGAGATCAGCGTCGTAGAGTCCATCTTCAAGC
TCAACGAGCAAGGCCCCTCCAACATCGTCAACAGCATGCGAAGCTCTCTC
ATCGACTCGCTGACATGA
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