mRNA_Ecto-sp13_S_contig14580.3514.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14580.3514.1
Unique NamemRNA_Ecto-sp13_S_contig14580.3514.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14580.3514.1 vs. uniprot
Match: D8LQ96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ96_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 1.470e-41
Identity = 84/100 (84.00%), Postives = 91/100 (91.00%), Query Frame = 3 
Query:    6 VLGDRNRRVMFRSWRRLCSRFVSLNAAKGSSPAATPAATAVQVDVKEKGAAMAISSIGAVEEEGLERSNREKELKQLRAVAKIARACGDTDKRSLFRGWS 305
            VLGDRNRR+MFRSW RLCS FVSLNAA+GSS AATPAA AV+VDV+ KG+A AISSI AVEEEG ERSNREKELK+LRAVAKI+RA GDTDKRSLFRGWS
Sbjct: 1797 VLGDRNRRLMFRSWGRLCSHFVSLNAAEGSSAAATPAARAVEVDVEGKGSAKAISSIDAVEEEGFERSNREKELKRLRAVAKISRAYGDTDKRSLFRGWS 1896
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14580.3514.1 vs. uniprot
Match: A0A6H5KKN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN4_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 9.940e-39
Identity = 88/133 (66.17%), Postives = 93/133 (69.92%), Query Frame = 3 
Query:    6 VLGDRNRRVMFRSWRRLCSRFVSLNAAKGSSPAATPAATAVQVDVKEKGAAMAISSIGAVEEEGLERSNREKELKQLRAVAK---------------------------------IARACGDTDKRSLFRGWS 305
            VLG+RNRR+MFRSW RLCS FVSLNA KGSS AATPAA AVQVDV+EKGAAMAISSIGAVEEEG ERSNREKELK+LRAVAK                                 IARACGDT +RSLFRGWS
Sbjct: 1393 VLGNRNRRLMFRSWGRLCSYFVSLNAVKGSSAAATPAARAVQVDVEEKGAAMAISSIGAVEEEGFERSNREKELKRLRAVAKVLGCLFRAPHAPNGCLTVGYKLWFFVASLLPSQIARACGDTGRRSLFRGWS 1525
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14580.3514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQ96_ECTSI1.470e-4184.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKN4_9PHAE9.940e-3966.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14580contigEcto-sp13_S_contig14580:661..1173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size306
Hectar predicted targeting categorymitochondrion
Exons2
Cds size273
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462778.43329-UTR-Ecto-sp13_S_contig14580:660..6921681462778.43329-UTR-Ecto-sp13_S_contig14580:660..692Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14580 661..692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462778.4420443-CDS-Ecto-sp13_S_contig14580:692..9111681462778.4420443-CDS-Ecto-sp13_S_contig14580:692..911Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14580 693..911 +
1681462778.4501252-CDS-Ecto-sp13_S_contig14580:1119..11731681462778.4501252-CDS-Ecto-sp13_S_contig14580:1119..1173Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14580 1120..1173 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14580.3514.1prot_Ecto-sp13_S_contig14580.3514.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14580 693..1173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14580.3514.1

>prot_Ecto-sp13_S_contig14580.3514.1 ID=prot_Ecto-sp13_S_contig14580.3514.1|Name=mRNA_Ecto-sp13_S_contig14580.3514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
MFRSWRRLCSRFVSLNAAKGSSPAATPAATAVQVDVKEKGAAMAISSIGA
VEEEGLERSNREKELKQLRAVAKIARACGDTDKRSLFRGWS
back to top

mRNA from alignment at Ecto-sp13_S_contig14580:661..1173+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14580.3514.1 ID=mRNA_Ecto-sp13_S_contig14580.3514.1|Name=mRNA_Ecto-sp13_S_contig14580.3514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14580:661..1173+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTACAGTGCTCGGCGATAGAAACCGGCGCGTCATGTTCCGTAGCTGGCGT
CGCCTGTGTTCGCGCTTCGTCTCGCTCAACGCGGCGAAGGGGTCATCTCC
AGCGGCAACACCCGCTGCAACGGCTGTTCAGGTTGACGTAAAGGAGAAGG
GGGCCGCAATGGCCATCTCGTCGATTGGCGCCGTCGAAGAGGAGGGGTTG
GAGCGAAGCAATCGGGAGAAGGAGCTGAAGCAACTTAGGGCAGTGGCGAA
GGTGAAGGAAGAGCCCGGTTGGTGAAGGTGCAATTAAGTTGAAGCCCAAA
AGGGACATAAATATCCACCATAGGGACAGGAACATCAACACGCTCGCGCG
ACAGGTTGTTGGATGCTAGTTCGGCGCACCACATGCTCCAAACGGTTGTC
TCACTGCGGAATAGAAGTACAAAGTATGGTTCTTCGTCGCCTCGTTGCTT
CCTTCTCAGATTGCTCGAGCATGTGGCGACACGGACAAGAGATCCTTGTT
CCGTGGTTGGAGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14580:661..1173+

>mRNA_Ecto-sp13_S_contig14580.3514.1 ID=mRNA_Ecto-sp13_S_contig14580.3514.1|Name=mRNA_Ecto-sp13_S_contig14580.3514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14580:661..1173+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCGTAGCTGGCGTCGCCTGTGTTCGCGCTTCGTCTCGCTCAACGC
GGCGAAGGGGTCATCTCCAGCGGCAACACCCGCTGCAACGGCTGTTCAGG
TTGACGTAAAGGAGAAGGGGGCCGCAATGGCCATCTCGTCGATTGGCGCC
GTCGAAGAGGAGGGGTTGGAGCGAAGCAATCGGGAGAAGGAGCTGAAGCA
ACTTAGGGCAGTGGCGAAGATTGCTCGAGCATGTGGCGACACGGACAAGA
GATCCTTGTTCCGTGGTTGGAGT
back to top