mRNA_Ecto-sp13_S_contig14560.3501.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14560.3501.1
Unique NamemRNA_Ecto-sp13_S_contig14560.3501.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14560.3501.1 vs. uniprot
Match: A0A6H5JVI2_9PHAE (Amino_oxidase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JVI2_9PHAE)

HSP 1 Score: 559 bits (1440), Expect = 3.090e-195
Identity = 288/300 (96.00%), Postives = 292/300 (97.33%), Query Frame = 1
Query:    4 FFAATSGRDRAASVSKSLQPSATRITESRENALSAVSVGKEIDPVYGGDKAATEVVVVGAGVGGLATAARLAKAGCRVTVVEKNSEEDIGGRLNELVMEGGFRFDTGPSLLLLPETYRETFAELGRDSDDFFEMRRVSPTYKVYFDDGESVDLSDDEEELRRQMDRLEDDGFDKYKAYLDGAQLNLEVGLPNFIEEKFTPGRLPEFAWGALFNSPLENHYGQLSRRFDNPKMRALLSFQDLYVGLSPYSAPAVFSLLQAIELRDGVYYPMGGFARVGEALGTVCRDLGVKFRFDSPVSEV 903
            FFAATSG  RAASV KSLQPSATRITESRENALSAVSVGKEIDPVYGG+KAATEVVVVGAGVGGLATAARLAKAGCRVTVVEKNSEEDIGGRLNEL+MEGGFRFDTGPSLLLLPETYRETFA LGRDSDDFFEMRRVSPTYKVYFDDGESVDLSDDE ELRRQMDRLEDDGFDKYKAYLD AQLNLEVGLPNFIEEKFTPGRLPEFA GALFNSPLENHYGQL RRFD+PKMRALLSFQDLYVGLSPY+APAVFSLLQAIELRDGVYYPMGGFARVGEALGTVCRDLGVKFRFDSPVSEV
Sbjct:   70 FFAATSGLHRAASVLKSLQPSATRITESRENALSAVSVGKEIDPVYGGEKAATEVVVVGAGVGGLATAARLAKAGCRVTVVEKNSEEDIGGRLNELLMEGGFRFDTGPSLLLLPETYRETFAALGRDSDDFFEMRRVSPTYKVYFDDGESVDLSDDEGELRRQMDRLEDDGFDKYKAYLDSAQLNLEVGLPNFIEEKFTPGRLPEFALGALFNSPLENHYGQLRRRFDSPKMRALLSFQDLYVGLSPYNAPAVFSLLQAIELRDGVYYPMGGFARVGEALGTVCRDLGVKFRFDSPVSEV 369          
BLAST of mRNA_Ecto-sp13_S_contig14560.3501.1 vs. uniprot
Match: A0A7S0CRG6_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CRG6_9EUKA)

HSP 1 Score: 252 bits (643), Expect = 2.020e-76
Identity = 127/257 (49.42%), Postives = 183/257 (71.21%), Query Frame = 1
Query:  163 EVVVVGAGVGGLATAARLAKAGCR---VTVVEKNSEEDIG-GRLNELVMEGG----FRFDTGPSLLLLPETYRETFAELGRDSDDFFEMRRVSPTYKVYFDDGESVDLSDDEEELRRQMDRLEDDGFDKYKAYLDGAQLNLEVGLPNFIEEKFTPG--RLPEFAWGALFNSPLENHYGQLSRRFDNPKMRALLSFQDLYVGLSPYSAPAVFSLLQAIELRDGVYYPMGGFARVGEALGTVCRDLGVKFRFDSPVSEV 903
            ++V++GAGVGGLA AARLAK   +   + V+EKNS  + G GR+ E+ + G     +RF+TGPSL+LLP+ YR+ F ++G D D FF+++RV P ++  F D  SV  SDD+ +++RQ++ LE DGF KY++Y+  A  NL+ GLP FI++    G  +LPEF +  L   PL +H+ QL + FD  +M+AL+SFQDLY+GLSPY APAVFSLLQ+IE   G+YYP+GGF+++ +AL  VC + GV+ ++DSPVS +
Sbjct:    8 DIVIIGAGVGGLAMAARLAKNKKKFEKIKVLEKNSRPEAGAGRVGEITLRGPNEEIYRFETGPSLMLLPDIYRKLFTDIGYDMDSFFKIQRVMPAFRAIFSDNISVTFSDDQADMQRQLNALEIDGFQKYQSYMKWADTNLDAGLPLFIQQDLASGAPKLPEFLFNCLRYWPLFSHHKQLGQFFDTDRMKALMSFQDLYIGLSPYEAPAVFSLLQSIEYTRGIYYPIGGFSKISQALIQVCEENGVEIQYDSPVSRI 264          
BLAST of mRNA_Ecto-sp13_S_contig14560.3501.1 vs. uniprot
Match: A0A6U4CWI0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CWI0_9STRA)

HSP 1 Score: 247 bits (631), Expect = 2.260e-74
Identity = 132/256 (51.56%), Postives = 174/256 (67.97%), Query Frame = 1
Query:  142 GGDKAATEVVVVGAGVGGLATAARLAKAGCRVTVVEKNSEEDIGGRLNELVMEGGFRFDTGPSLLLLPETYRETFAELGRDSDDFFEMRRVSPTYKVYFDDGESVDLSDDEEELRRQMDRLEDDGFDKYKAYLDGAQLNLEVGLPNFIEEKFTPGRLPEFAWGALF--NSPLENHYGQLSRRFDNPKMRALLSFQDLYVGLSPYSAPAVFSLLQAIELRDGVYYPMGGFARVGEALGTVCRDLGVKFRFDSPVSEV 903
            GG K+ T   +VGAGVG L +AA LA+ G +V + EKN E+ +GGR+N+ V+EG  RF+ GPSLLLLP+ YR+TFA  G D D+   + RV PTYK YFDDG    L   + + +  ++ +E   +++YK Y++ A++NLE G PNFIEEK T   LP+F   AL   N PL +H   L + F   K+ AL SFQDLYVGLSPY+APAVFSLL AIEL DGVYYP+GGF ++ +AL   C +LGVKF F + V ++
Sbjct:   62 GGGKSVT---IVGAGVGSLVSAALLAQDGYKVEIFEKNPEDQVGGRINQAVIEG-CRFELGPSLLLLPDVYRKTFAACGLDLDEEMTIARVDPTYKAYFDDGTGFVLDPRDPDFKGNLEAIEAGSYEQYKKYMESAEINLEGGWPNFIEEKLTLDVLPKFIANALTPRNFPLLSHNQHLKQYFKTKKLNALFSFQDLYVGLSPYNAPAVFSLLTAIELSDGVYYPIGGFHQIPKALRRRCEELGVKFNFGAGVKKI 313          
BLAST of mRNA_Ecto-sp13_S_contig14560.3501.1 vs. uniprot
Match: A0A0G4G440_VITBC (Amino_oxidase domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G440_VITBC)

HSP 1 Score: 242 bits (618), Expect = 1.300e-71
Identity = 125/249 (50.20%), Postives = 174/249 (69.88%), Query Frame = 1
Query:  169 VVVGAGVGGLATAARLAKAGCRVTVVEKNSEEDIGGRLNELVME---GGFRFDTGPSLLLLPETYRETFAELGRDSDDFFEMRRVSPTYKVYFDDGESVDLS-DDEEELRRQMDRLEDDGFDKYKAYLDGAQLNLEVGLPNFIEEKFTPGRLPEFAWGALFNSPLENHYGQLSRRFDNPKMRALLSFQDLYVGLSPYSAPAVFSLLQAIELRDGVYYPMGGFARVGEALGTVCRDLGVKFRFDSPVSEV 903
            +VVGAG+GGL TA RLA+ G  VTV+EKNSE  +GGR+ E ++E   G FRFDTG SL L+PE + ETF+ LG    D  ++R+V P Y ++++DG +++L+  +   L+ Q+D+LEDDG+DK+  YLD A  N   G+PNFI+ +F+   +  F    L   PL +H+ +  R F NPK++AL++FQDLYVGLSPYSAPAVFSLLQAIE + GV+YP+GG+  V + L  + R LGVK  F++ V E+
Sbjct:   74 IVVGAGIGGLVTAGRLAREGFDVTVLEKNSEAMVGGRVGEELVETSKGRFRFDTGASLFLMPEIFEETFSSLGVALHDAIDLRKVEPPYMIFYEDGTALNLTMSNRALLKEQLDQLEDDGYDKFMRYLDAADGNRLFGVPNFIQFEFSFDSINAFLKSLLSMWPLSSHHTEAGRFFSNPKLQALVTFQDLYVGLSPYSAPAVFSLLQAIEFKQGVFYPVGGYHTVAKKLLQIVRSLGVKVHFNTNVKEI 322          
BLAST of mRNA_Ecto-sp13_S_contig14560.3501.1 vs. uniprot
Match: A0A7S4DMK3_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DMK3_9EUKA)

HSP 1 Score: 204 bits (519), Expect = 1.440e-58
Identity = 92/181 (50.83%), Postives = 138/181 (76.24%), Query Frame = 1
Query:  370 ELGRDSDDFFEMRRVSPTYKVYFDDGESVDLSDDEEELRRQMDRLEDDGFDKYKAYLDGAQLNLEVGLPNFIEEKFTPGR--LPEFAWGALFNSPLENHYGQLSRRFDNPKMRALLSFQDLYVGLSPYSAPAVFSLLQAIELRDGVYYPMGGFARVGEALGTVCRDLGVKFRFDSPVSEVR 906
            ++G+D D+   ++RV P ++V F DG SV LSDDEE++R+++D LE DG+DKY+ Y++ A +NL+ GLP FIE+ +  G   LP+F   AL + PL++H+ QL   F++ +M+AL SFQDLY+GLSPY+AP VFSLLQ+IEL +G+YYP+GGFA++ E + T+C D+GVK  +D+ VS+++
Sbjct:    1 DVGKDMDEHISIQRVMPAFRVNFADGASVTLSDDEEKMRKELDSLEIDGYDKYRRYMEMADINLDAGLPLFIEQDWEKGLPVLPKFLINALLHWPLKSHHDQLGEFFESDRMKALFSFQDLYIGLSPYTAPGVFSLLQSIELTNGIYYPIGGFAKIAEKMKTLCEDMGVKIHYDTSVSQIQ 181          
BLAST of mRNA_Ecto-sp13_S_contig14560.3501.1 vs. uniprot
Match: UPI00198BA352 (Phytoene desaturase n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=UPI00198BA352)

HSP 1 Score: 200 bits (508), Expect = 1.580e-58
Identity = 109/253 (43.08%), Postives = 156/253 (61.66%), Query Frame = 1
Query:  169 VVVGAGVGGLATAARLAKAGCRVTVVEKNSEEDIGGRLNELVMEGGFRFDTGPSLLLLPETYRETFAELGRDSDDFFEMRRVSPTYKVYFDDGESVDLSDDEEELRRQMDRLEDDGFDKYKAYLDGAQLNLEVGLPNFIEEKFTPGRLPEFAWGALFNSPL-------ENHYGQLSRRFDNPKMRALLSFQDLYVGLSPYSAPAVFSLLQAIELRDGVYYPMGGFARVGEALGTVCRDLGVKFRFDSPVSEVR 906
            +V+GAG+GG+ATAARLAK G  VTV+EKN  E  GGR N+++  GG RFD GP+L L+PE + ETFA LG    D  ++RR+ PTYKV FDDG  ++L+ D  +++ Q++++E   F  +  Y+     + +V L  F+   F       F + +L N PL         HY    R F + +++A  +FQ++Y+GLSPY APA +SLLQ  EL +GV+YPMGG     +AL  V   LGVKF +D P  +++
Sbjct:    6 IVIGAGIGGIATAARLAKNGYDVTVLEKN--ETPGGRCNQII-RGGHRFDIGPTLFLMPEVWEETFASLGEKMSDHLDLRRIDPTYKVRFDDGLQLELTSDIGKMQTQLEKVEKTAFTGFLNYIAEGSKHYKVSLEKFVGRNF----YNIFEYFSLANLPLIFQLKALGKHYANTGRFFKDERLKAAFTFQNMYLGLSPYDAPATYSLLQYTELAEGVWYPMGGMYAGIQALVNVAEKLGVKFIYDQPARKLK 251          
BLAST of mRNA_Ecto-sp13_S_contig14560.3501.1 vs. uniprot
Match: A0A2U2S6Y7_9CHLR (Phytoene desaturase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A2U2S6Y7_9CHLR)

HSP 1 Score: 202 bits (515), Expect = 8.990e-58
Identity = 109/253 (43.08%), Postives = 164/253 (64.82%), Query Frame = 1
Query:  169 VVVGAGVGGLATAARLAKAGCRVTVVEKNSEEDIGGRLNELVMEGGFRFDTGPSLLLLPETYRETFAELGRDSDDFFEMRRVSPTYKVYFDDGESVDLSDDEEELRRQMDRLEDDGFDKYKAYLDGAQLNLEVGLPNFIEEKFTPGRLPEFAWGALFNSPL-------ENHYGQLSRRFDNPKMRALLSFQDLYVGLSPYSAPAVFSLLQAIELRDGVYYPMGGFARVGEALGTVCRDLGVKFRFDSPVSEVR 906
            +V+GAG+GG+ATAARLAK G +VTV+EKN  E  GGR N++V +G  RFD GP+L L+PE + ETFA LG    D  ++RR+ PTYKV+F+DG  + L+ D  E++RQ++ +E   F  + +Y+     + ++ L  F+   F    L E+   +L N PL       + HY   SR F + +++A  +FQ++Y+GLSPY APA +SLLQ  EL +GV+YP+GG     +AL  + ++LGVKF ++ PV +++
Sbjct:    8 IVIGAGIGGIATAARLAKNGYQVTVLEKN--EQPGGRCNQIVRDG-HRFDIGPTLFLMPEVWEETFAALGERMSDHLDLRRIDPTYKVHFEDGLQLQLTSDIGEMQRQLEAVEKTAFTGFLSYIAEGAKHYKISLEKFVGRNFYS--LLEYF--SLSNLPLIFQLKALDKHYRNTSRYFKDERLKAAFTFQNMYLGLSPYDAPATYSLLQYTELAEGVWYPIGGMYAAIQALTKIAQNLGVKFIYNMPVKKIQ 253          
BLAST of mRNA_Ecto-sp13_S_contig14560.3501.1 vs. uniprot
Match: E4UPP5_ARTGP (Phytoene dehydrogenase n=1 Tax=Arthroderma gypseum (strain ATCC MYA-4604 / CBS 118893) TaxID=535722 RepID=E4UPP5_ARTGP)

HSP 1 Score: 202 bits (513), Expect = 3.190e-57
Identity = 109/253 (43.08%), Postives = 167/253 (66.01%), Query Frame = 1
Query:  169 VVVGAGVGGLATAARLAKAGCRVTVVEKNSEEDIGGRLNELVMEGGFRFDTGPSLLLLPETYRETFAELGRD-SDDFFEMRRVSPTYKVYFDDGESVDLSDDEEELRRQMDRLEDD-GFDKYKAYLDGAQLNLEVGLPNFIEEKFTPGRL-----PEFAWGALFNSPLENHYGQLSRRFDNPKMRALLSFQDLYVGLSPYSAPAVFSLLQAIELRDGVYYPMGGFARVGEALGTVCRDLGVKFRFDSPVSEVR 906
            ++VGAG GG+ATAARLAK G  VTVVEKNS   IGGR + L+ E G+RFD GPSLLLLP+ + +TF +LG    D+  ++ +  P Y+++F D + VD+S D  +++ +++R ED+ GFD+Y +Y+  +  + ++ + + +++ F   RL     PEF +  L   P E+ Y + SR F + KMR + +F  +Y+G+SP+ APA +SLLQ  EL DG++YP GGF  V EA+  + +  GVK+R + PVS ++
Sbjct:    7 IIVGAGAGGVATAARLAKEGFEVTVVEKNSF--IGGRCS-LIQENGYRFDQGPSLLLLPKLFADTFKDLGTSMQDEGVQLLKCEPNYRIWFGDHDRVDMSTDMAKMKAEIERYEDEAGFDRYLSYMKESSRHHDLSMVHVLKKNFP--RLFSMLRPEFLFSTLTLHPFESIYSRASRYFASEKMRRVFTFASMYLGMSPFDAPATYSLLQYSELADGIWYPTGGFQAVLEAVANIGKRSGVKYRLNEPVSSIQ 254          
BLAST of mRNA_Ecto-sp13_S_contig14560.3501.1 vs. uniprot
Match: A0A7V4ST32_9CHLR (Phytoene desaturase (Fragment) n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7V4ST32_9CHLR)

HSP 1 Score: 200 bits (508), Expect = 4.240e-57
Identity = 110/257 (42.80%), Postives = 159/257 (61.87%), Query Frame = 1
Query:  163 EVVVVGAGVGGLATAARLAKAGCRVTVVEKNSEEDIGGRLNELVMEGGFRFDTGPSLLLLPETYRETFAELGRDSDDFFEMRRVSPTYKVYFDDGESVDLSDDEEELRRQMDRLEDDGFDKYKAYLDGAQLNLEVGLPNFIEEKFTPGRLPEFAWG---ALFNSPL-------ENHYGQLSRRFDNPKMRALLSFQDLYVGLSPYSAPAVFSLLQAIELRDGVYYPMGGFARVGEALGTVCRDLGVKFRFDSPVSEV 903
            EVVVVGAGVGG+A A RLA+AG RVTV EK +    GGRL+ L  +G F FD GPSLLL+P  + ET+A LG   DD  ++ R+ PTY+V+F D  S+DL+ D   LR  ++ +E         ++     +  + L +F+   F       ++WG   +L N PL         HY  +SR F +P++RA  SFQ++Y+GLSP+ APA F+LLQ  EL +G+++P GG +R+GE+L ++   LGV+FR+  PV+ +
Sbjct:    3 EVVVVGAGVGGVAVAGRLARAGHRVTVFEKRASS--GGRLSVLERDG-FHFDMGPSLLLMPPVFAETYASLGERMDDQLDLVRLDPTYRVHFHDDSSLDLTGDIPRLRTAVEAIEPGSTTSLLRFIAEGSNSYYISLEHFVGRNF-------YSWGEYLSLANLPLLFELKALVKHYDNVSRYFSDPRLRAAFSFQNMYLGLSPFDAPATFTLLQYTELGEGIWFPRGGMSRIGESLTSIAEGLGVRFRYGEPVARI 249          
BLAST of mRNA_Ecto-sp13_S_contig14560.3501.1 vs. uniprot
Match: A0A3N5U9B0_9CHLR (Phytoene desaturase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5U9B0_9CHLR)

HSP 1 Score: 195 bits (495), Expect = 4.810e-57
Identity = 105/254 (41.34%), Postives = 161/254 (63.39%), Query Frame = 1
Query:  169 VVVGAGVGGLATAARLAKAGCRVTVVEKNSEEDIGGRLNELVMEGGFRFDTGPSLLLLPETYRETFAELGRDSDDFFEMRRVSPTYKVYFDDGESVDLSDDEEELRRQMDRLEDDGFDKYKAYLDGAQLNLEVGLPNFIEEKF-------TPGRLPEFAWGALFN-SPLENHYGQLSRRFDNPKMRALLSFQDLYVGLSPYSAPAVFSLLQAIELRDGVYYPMGGFARVGEALGTVCRDLGVKFRFDSPVSEVR 906
            +V+GAG+GG+ATAARLAK G  VTV+EK S    GGR N++V +G  RFD GP+L L+PE + ETFA LG    D  +++R+ PTYKV+F+DG  ++L+ +  +++ Q+D+++   F  +  Y+     + ++ +  F+   F       +PG LP      LF    L  HY  +S+ F + +++A  +FQ++Y+GLSPY APA +SLLQ  EL +GV+YPMGG     EAL  +   LGVKF +++PV +++
Sbjct:    7 LVIGAGIGGIATAARLAKNGYDVTVLEKESTP--GGRCNQIVCDG-HRFDIGPTLFLMPEIWEETFAALGERMSDHLDLKRIDPTYKVHFEDGLQLELTSNLGDMQVQLDKVDKTAFTGFLNYIAEGGKHYKMSVEKFVGRNFYNIFQYFSPGNLP-----LLFQLKALRKHYANVSKYFTDERLKAAFTFQNMYLGLSPYDAPATYSLLQYTELAEGVWYPMGGMYAAIEALVKIAERLGVKFIYNAPVKKMK 252          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14560.3501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVI2_9PHAE3.090e-19596.00Amino_oxidase domain-containing protein n=2 Tax=Ec... [more]
A0A7S0CRG6_9EUKA2.020e-7649.42Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A6U4CWI0_9STRA2.260e-7451.56Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A0G4G440_VITBC1.300e-7150.20Amino_oxidase domain-containing protein n=2 Tax=Vi... [more]
A0A7S4DMK3_9EUKA1.440e-5850.83Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
UPI00198BA3521.580e-5843.08Phytoene desaturase n=1 Tax=Anaerolineales bacteri... [more]
A0A2U2S6Y7_9CHLR8.990e-5843.08Phytoene desaturase n=1 Tax=Anaerolineae bacterium... [more]
E4UPP5_ARTGP3.190e-5743.08Phytoene dehydrogenase n=1 Tax=Arthroderma gypseum... [more]
A0A7V4ST32_9CHLR4.240e-5742.80Phytoene desaturase (Fragment) n=1 Tax=Anaerolinea... [more]
A0A3N5U9B0_9CHLR4.810e-5741.34Phytoene desaturase (Fragment) n=1 Tax=Chloroflexi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14560contigEcto-sp13_S_contig14560:327..4097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score556.6
Seed ortholog evalue7.2e-156
Seed eggNOG ortholog2880.D7FLI6
Model size918
KEGG rclassRC01214,RC02605
KEGG koko:K15745
KEGG ReactionR04787,R04798,R04800,R07518,R09692
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.all-trans-retinol 13,14-reductase activity
EggNOG OGsCOG1233@1,KOG4254@2759
Ec32 ortholog descriptionPhytoene desaturase CrtI family
Ec32 orthologEc-17_001040.1
EC1.3.99.30
Cds size918
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14560.3501.1prot_Ecto-sp13_S_contig14560.3501.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14560 327..4097 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462777.0046997-CDS-Ecto-sp13_S_contig14560:326..4671681462777.0046997-CDS-Ecto-sp13_S_contig14560:326..467Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14560 327..467 -
1681462777.023885-CDS-Ecto-sp13_S_contig14560:1633..16771681462777.023885-CDS-Ecto-sp13_S_contig14560:1633..1677Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14560 1634..1677 -
1681462777.0367742-CDS-Ecto-sp13_S_contig14560:2108..22771681462777.0367742-CDS-Ecto-sp13_S_contig14560:2108..2277Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14560 2109..2277 -
1681462777.047527-CDS-Ecto-sp13_S_contig14560:2569..27041681462777.047527-CDS-Ecto-sp13_S_contig14560:2569..2704Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14560 2570..2704 -
1681462777.0645394-CDS-Ecto-sp13_S_contig14560:3009..30681681462777.0645394-CDS-Ecto-sp13_S_contig14560:3009..3068Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14560 3010..3068 -
1681462777.0837128-CDS-Ecto-sp13_S_contig14560:3545..36821681462777.0837128-CDS-Ecto-sp13_S_contig14560:3545..3682Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14560 3546..3682 -
1681462777.095678-CDS-Ecto-sp13_S_contig14560:3864..40971681462777.095678-CDS-Ecto-sp13_S_contig14560:3864..4097Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14560 3865..4097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14560.3501.1

>prot_Ecto-sp13_S_contig14560.3501.1 ID=prot_Ecto-sp13_S_contig14560.3501.1|Name=mRNA_Ecto-sp13_S_contig14560.3501.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=306bp
AFFAATSGRDRAASVSKSLQPSATRITESRENALSAVSVGKEIDPVYGGD
KAATEVVVVGAGVGGLATAARLAKAGCRVTVVEKNSEEDIGGRLNELVME
GGFRFDTGPSLLLLPETYRETFAELGRDSDDFFEMRRVSPTYKVYFDDGE
SVDLSDDEEELRRQMDRLEDDGFDKYKAYLDGAQLNLEVGLPNFIEEKFT
PGRLPEFAWGALFNSPLENHYGQLSRRFDNPKMRALLSFQDLYVGLSPYS
APAVFSLLQAIELRDGVYYPMGGFARVGEALGTVCRDLGVKFRFDSPVSE
VRGYQ*
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mRNA from alignment at Ecto-sp13_S_contig14560:327..4097-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14560.3501.1 ID=mRNA_Ecto-sp13_S_contig14560.3501.1|Name=mRNA_Ecto-sp13_S_contig14560.3501.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3771bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14560:327..4097- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTTCTTTGCGGCTACCTCAGGAAGAGATCGTGCGGCGAGTGTTTCGAA GTCGCTGCAGCCCTCAGCAACAAGAATAACGGAATCACGCGAAAACGCGT TGAGCGCGGTTTCCGTGGGGAAGGAAATCGATCCCGTGTACGGAGGAGAC AAGGCGGCCACCGAGGTTGTGGTCGTCGGGGCCGGGGTAGGGGGGCTTGC GACGGCCGCGCGTCTGGCGAAGGCCGGCTGTAGGTGCGTGTAATATGTTG CTGCTGTGGCGGTGTCGGTAGGGGTGATAGTGGAGGGGGAGGTGCCGATT GGCCCCAAACCCTCTGCTTATGTCTTCGCTCGAGATTGCCGCGGCTGTTG AGATGTGTCCCTTCGGCCTTGATTGACTGGCCTTGAGTACCCTTTGTGCG TGCTTTTGTGCGTAGGGTGACCGTGGTGGAGAAGAATAGTGAAGAAGACA TTGGGGGGAGGCTGAACGAGCTAGTGATGGAAGGAGGATTTCGCTTCGAC ACCGGACCAAGCCTTCTTCTCCTGCCTGAGACCTACCGGGAGACCTTCGC AGGTTCATTGCTGTCGTGATTTGCCGTTGGGATATGGTTGTAGTTGTCGT CGCTGCTGATGTTTCTGTTGCCGTTCTCGTTGCGGCGGTTTCTTCTCGTT CTGTTTCGGCTGCACTTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT GCCTCTACCCTTGTCGTTGTTGTTACCATTGCTCTCGCTTGTTGTCGGTG CTGATGTGGCTGCCGTATTTCCCTAATGCAATTGTAATTTTTGTTGTCTG TGGAAGACTTGCCTTCATGCCAGCCCAATCTATATGCACATAGGAGAACG CCTACCAGACGCCGCGATATGTTCAGCAGTGTGCTCTGCTGTCGAACTCA AGATGCGACGACTAATAGTAGTACCGAAAGCTGTCCTCTCGAGTTTTATC TTTCACGGCTAACTCTGTTGCTGCTTCAACGATGCTGCTGCTGTGTGCAA TGGCTATGGCGCTGCAATTGGTGCCGAAGAACTCGGCCGTGACTCTGACG ATTTCTTCGAGATGAGGAGAGTGTCGCCGACTTACAAGGTGCCAGTCACT GCTGATGCTGCTGCTGCTGCTGCTGCTGCCGCTGCCGCTGCTGCTGCTGC TGCTTCTTTCGTTGTTGTTGTTCTGTGGTCATCGTGAAGCATCGTTAAGG ATATTCTTATTCTCGAACCAGAATCCGTTACCGTTGAGGTGCAATGTGGT GCTGCTGCCACCGCCGATTTGGTTATTCATGTCGAAGACGTATATTTACT ATGAGCCTCATCAAAGATGACAATCATGCGTTTGTTTCTCTTGTAGGTCC TGCCGCAGTCGCGTTTACGACACAACCGGTGTGTGTTGATCAGGTGTACT TCGACGATGGAGAGTCGGTGGACCTCAGCGACGACGAAGAAGAGCTGCGG CGGCAGATGGACAGGCTAGAGGACGACGGCTTCGACAAGTACAAAGCGTA TCTCGATGGTGCCCAGCTGAACCTGGAGGTCGGTCTTCACAGGGTGAACA GTAGTTCGTCCGTGCATGTGGCAAGTTCTTTTCTCCGTTTTCTTTTTGCA CGTATGGCTTTTGGAGTGATATTGTAACAGCTATGGATACGTGTTCGGTG ATGCCTCGAAGTTGGAAGAAGGGACAATGCGATAATTCAGGTAGCACAGA AGGACCGCCAAGACAGACCTAACTCAATATCTTTATTTTTCTACCTTCCC TCCCCGCCTGCGGTGTATTGCATGCCCCGGTTCGTTTTGTTGCACTCTGT CCCGCCTTACGCTGTTCCAGGTGGGGCTGCCAAACTTCATCGAAGAGAAG TTTACCCCCGGGCGTCTTCCAGAATTTGCCTGGGGCGCGCTGTTCAACTC TCCCCTGGAGAACCACTACGGGCAGCTCAGCCGGCGCTTTGACAATCCCA AGATGAGGGCTCTTCTAAGCTTTCAAGACCTCTACGTAGGTGAGTACAGT CGACAGTCCCAAGAAGGGGGCTCTCCTGAGCTTTCACATTCTCGACGTCG AGGTGACAGACCCTTGATAGAAGCTCTCCAGTCAAGTCGACAGCCTCGAG GAAACACTGTTCCGAGTTTGCAAGACGCCTACGTAAGTAAGTAGAGTCGA CAGCCCCGAGATAGAAGCCCCCTTCAACAGGAACGAAGTCGTGTGTCATG CGCCAATCCTCTTCACGCTGGAAATTGTTTGCATGTAGTATGAATATTGA TCCCTTTGTCGATTTTACCTGTACCGGCGGGCGCAGTACTGTGGATCGTT CAGTTGTGTGATCGGTGCTTTTTCTGGTCGTTTTCTCTTGGTATTCTTCC TGCTACTGTTGGCCTGCATCTCCATGACTGGCGTCCCATCTTTTTTATTC CGCTGAAAAAAACATCTCAGGGCTTTCTCCGTACAGTGCCCCGGCAGTGT TCTCGCTTCTGCAGGTGAGCACGACTGGATGGGGGGATGGCAAGTTTGGG AAGGGAGGATGGTTCTATTTGATGGCTGGGGATGTATTCGTCATTTTAGA CGCGGTATTGCTGCTGTGTGTCGGCCTTGTGTTTTCCCTTCTGCATTGAA ATATGGTACGCAGATCGGGGTGGTATGGGGGTGCTAGGTGCTTTTCACGA GCGCCATATTTTGCTCTGCTGCTGTCCACGAATAGTAGCAGACGAGGAAA CACCAGAATCTTGGATGAATCGCCGCACCTGCCGCACGTAGCTAGGGTTG GATCTACGAAAATTACTCATTGGAAACGAAAGTGTCAAGAAAATATGTGA CGTGTTTGTCTAAATGTGCCACTTCAGTGTTAGAACCATGAGGTAACATC TTTTCTTCCAGCCCTATCAGTCGTTGCCACGGGCTTGCAATGCTCTCCTT GTTGCGGCGGAACCAAGAGTCAAAGCTTGTTCAAGGTGGGACACGGACGG AGGGTGCTATTCTGCATCATTTCCGCAGATTACAAGCTGTTTTCTTGAGT TGTACATACGCCGAAGTTATGCCCATTCCCCGTTCAGGCATCCTTCGAAA GTCAGCTGGGCAGGTGCACAATCCCTACAACCGCGCCTCGAGCACACAGT CGCTGCCCTCCTCCACCCTCTTTATTACAATGACGGGCCCCGTGCACCTG GCGGCTTGCACCCAGAACCAAACCAGCCTTCATCGAATTTTCCATGCCCG TAAAATATATACCCATCTGTCTCGTGCACACGCTCGTTCGCAAGCATTTT GGGTCGTGTCTATCCGCCCTTGAAACACGATTCATCCCCTCGGCCCTTGC ACACCATTCCCAGCACCTCTCCCACCCTGCTCCCAGATGGTAGATCCTTG GGCGACCAAATAGATGGCCTGATAAACGTATATGATACTGGGTTTCTTAA AGGAAGTGAGAGGCCATAGTGCAACACGTACACGGATGCGAGACCGAGCT GCACATGTCCGTCGCTCAGCACGCTGACGCTTGTATGATTCACGTCCCTT GTTTGAAACTCAACTTCAGCAACACGAAGGATGGCCCGGCCTCTGAGAGC TCGAACCTTGAAAATCGCAACATGTGTGTCGTACATGAGACTTGGCTTCC AATGTTAAAGCCTTGTGTACGCGTTCTCAGGCGATCGAGCTGCGCGACGG GGTATACTACCCGATGGGGGGCTTTGCCAGGGTGGGAGAGGCGCTGGGAA CAGTCTGCAGGGACCTTGGAGTAAAGTTTCGGTTCGACTCCCCTGTGTCG GAGGTGCGTGGATATCAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14560:327..4097-

>mRNA_Ecto-sp13_S_contig14560.3501.1 ID=mRNA_Ecto-sp13_S_contig14560.3501.1|Name=mRNA_Ecto-sp13_S_contig14560.3501.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=918bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14560:327..4097- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTTCTTTGCGGCTACCTCAGGAAGAGATCGTGCGGCGAGTGTTTCGAA
GTCGCTGCAGCCCTCAGCAACAAGAATAACGGAATCACGCGAAAACGCGT
TGAGCGCGGTTTCCGTGGGGAAGGAAATCGATCCCGTGTACGGAGGAGAC
AAGGCGGCCACCGAGGTTGTGGTCGTCGGGGCCGGGGTAGGGGGGCTTGC
GACGGCCGCGCGTCTGGCGAAGGCCGGCTGTAGGGTGACCGTGGTGGAGA
AGAATAGTGAAGAAGACATTGGGGGGAGGCTGAACGAGCTAGTGATGGAA
GGAGGATTTCGCTTCGACACCGGACCAAGCCTTCTTCTCCTGCCTGAGAC
CTACCGGGAGACCTTCGCAGAACTCGGCCGTGACTCTGACGATTTCTTCG
AGATGAGGAGAGTGTCGCCGACTTACAAGGTGTACTTCGACGATGGAGAG
TCGGTGGACCTCAGCGACGACGAAGAAGAGCTGCGGCGGCAGATGGACAG
GCTAGAGGACGACGGCTTCGACAAGTACAAAGCGTATCTCGATGGTGCCC
AGCTGAACCTGGAGGTGGGGCTGCCAAACTTCATCGAAGAGAAGTTTACC
CCCGGGCGTCTTCCAGAATTTGCCTGGGGCGCGCTGTTCAACTCTCCCCT
GGAGAACCACTACGGGCAGCTCAGCCGGCGCTTTGACAATCCCAAGATGA
GGGCTCTTCTAAGCTTTCAAGACCTCTACGTAGGGCTTTCTCCGTACAGT
GCCCCGGCAGTGTTCTCGCTTCTGCAGGCGATCGAGCTGCGCGACGGGGT
ATACTACCCGATGGGGGGCTTTGCCAGGGTGGGAGAGGCGCTGGGAACAG
TCTGCAGGGACCTTGGAGTAAAGTTTCGGTTCGACTCCCCTGTGTCGGAG
GTGCGTGGATATCAGTGA
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