mRNA_Ecto-sp13_S_contig1454.3491.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1454.3491.1
Unique NamemRNA_Ecto-sp13_S_contig1454.3491.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1454.3491.1 vs. uniprot
Match: D7FVJ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVJ0_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 1.140e-46
Identity = 70/75 (93.33%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 MGNRSRRTIVAETEPTFVQSCSTKWSKGLQRGARWDKDTFEDFPVCVHWFRQFMAAAAGICVGFAGVTGWFGLVG 225
            M NRSRRT+VAE EPTFVQSCSTKWSKGLQRGARWDKDTFEDFPVCVHWFRQFMAA AGICVG AGVTGWFGLVG
Sbjct:    1 MSNRSRRTVVAEAEPTFVQSCSTKWSKGLQRGARWDKDTFEDFPVCVHWFRQFMAAVAGICVGVAGVTGWFGLVG 75
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1454.3491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVJ0_ECTSI1.140e-4693.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1454contigEcto-sp13_S_contig1454:10071..14412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size287
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size153
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462776.0972507-UTR-Ecto-sp13_S_contig1454:10070..101811681462776.0972507-UTR-Ecto-sp13_S_contig1454:10070..10181Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1454 10071..10181 +
1681462776.1059754-UTR-Ecto-sp13_S_contig1454:13550..135731681462776.1059754-UTR-Ecto-sp13_S_contig1454:13550..13573Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1454 13551..13573 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462776.1142356-CDS-Ecto-sp13_S_contig1454:13573..136631681462776.1142356-CDS-Ecto-sp13_S_contig1454:13573..13663Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1454 13574..13663 +
1681462776.122376-CDS-Ecto-sp13_S_contig1454:14349..144121681462776.122376-CDS-Ecto-sp13_S_contig1454:14349..14412Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1454 14350..14412 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1454.3491.1prot_Ecto-sp13_S_contig1454.3491.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1454 13574..14412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1454.3491.1

>prot_Ecto-sp13_S_contig1454.3491.1 ID=prot_Ecto-sp13_S_contig1454.3491.1|Name=mRNA_Ecto-sp13_S_contig1454.3491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
MRPLVQTIYGGGGGDMCGVRGSHWMVRARWFRTSSGMFWRHELYTPCCGF
*
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mRNA from alignment at Ecto-sp13_S_contig1454:10071..14412+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1454.3491.1 ID=mRNA_Ecto-sp13_S_contig1454.3491.1|Name=mRNA_Ecto-sp13_S_contig1454.3491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1454:10071..14412+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTAACCGGAGCAGGAGAACGATTGTGGCGGAGACGGAGCCTACATT
CGTGCAGAGCTGCTCAACAAAATGGTCGAAGGGGTTGCAGCGAGGCGCCA
GATGGGATAAGGTATGTGTGTACAGTTTGCATCTCCCCCCTCTGTACTGC
TGTTTCGCCGTGATCGCCCGCCGTGCCTAGCCTTGGGATGTCTCCAATTT
ATAGTCCCACCTTTCTCTCCTCCTGGTTGACCAAGCCTCGTAGTGTCCAT
ATATCTTTGGGAACCATAAACTGCGCTCTGTGCTCGTAGTGCTCCCCATC
TCCCAAATCTGCAAATAGACCGCCCTTCTCTGACGGTACAATGAGGACCT
TGTTTTTCGGGTGGTTGCTCAACAGCGACAAGCAGCAGCGGATGACGAGA
GACAATCACATGTAGTGTGCAAATTCTCGTGCTACAAAATTTACGGACAT
GAGATACCGCTATGATCTCGTTGGGAATATATTCGAAGGGAAACTTCAGG
AGTTCTACATGTGTTTCCCCTCGAAGCTGCAGCAGCTTCTCCGGGCGTAG
CGGCCTCCACGTGGGTCCACAATCTCGTAAACGAGTAGCTACTGTATACC
GGAGACATCCTTTGTAGAATCCCAGTGGCGTGTCCTTCGTGTACTACAGA
CTTGCTTGGTTGCTTGGAGGATGATTTTTGTACTTCTGCTTATCTGAGTT
CTATCTGGGTTCAATGTGCTCACCAGGCATGCCCGGATTGGTGGGCAAAA
TGCTACTCGGATATTGTTGTCTTGTGTAGAAGTCGGGTGTTACGTTTTAG
TCGGGTTTTTACCAGTAGATTACCCCGCTGGTCACGCGCGCCGATGGCAC
TGCTGTACATTTGCGGTTATCCCCGTGAAATCCCGGTCGCTAACTCTAGG
GAAGTGTTCCAAAGTCTGAGGTGTGGATGTATTATTGGCCCTCTTTGACA
TTGCGGGTTTTCTCGTTCGCTTTGCGAAGTGCGACTAGAGACAATGAAGT
CCTGATTGAGGTGGGGTTCGGTAGGGGGCATGAGATATCGCACCTCCTGG
ACTGAAGGAAAATTTCCTCAACAGCAGAGGAAAGTAGTGGTGCCGAAAGT
CTGGGTGTGTTGGAACCACCTCTCCGAAAGCCTATCGTTTGATTCATTCT
TAATCTTCGTCTTGGAGTACATCGAACTTCGAAAACTGGTCAAGAGGGTG
TGAAATCTTGCGCCACCTACGGTAAACATTTTCGTGGTTGCCTGCACAAG
GTGTGTACCTGCATCGGGCTAGAGCGTGCATCTCGAGCTGGCCGGGAACG
CGGTGGCTCGAAGCCGAGCGCAGTCCAGAAAACAACAGAAAACGCCTGTA
TTCGTGGTTCAGACGCATGGCAACGAAGAGTGCGTGTAGTGCGCGAAGAG
TAGATGAGGTGCAAGAAGAGCAGCACATGCTGTATGCATGTCATCAGCGT
TGGTGTATGGCGGCGTATGTATTTGTGTGTTTCAGCCTTTATCTCCTCGC
AGCTGTGTTCAGATATGTTCACAACACAAAGAATAAACCCAACTGGACAA
GCCAAACCGGACTACATGCAAACATGCACAACGAGCTCTCTCGGCGATCA
GATGGCCTTGATTGCTACGGTAGGAGAGACTTGCCTCTCTGTGTCTATCG
CTCGCTCTGTGTCTCTCGTGTGAACACCCGCGCGCATGTGTGTGCCCACG
CGTCCACGCCTTACCTACGTATTTTCGAGACTCGACAGCTTGTCAATATC
AGTATCTCAGGTCGCAACCTGATTCTCAATCTCTCGCTCCCTCTATCTCG
CCCTTTCAACTTGACAACAATCTACATGAGGCCTCTCATCGCTCTCGACG
GTGCTGAGTACCGACAGCGAAGGTAGGCATCCGCTGCTCTCTCGACCGAC
TGAGCACGAGTTGAGCGTGAAGTGATTGGGGCAGGCCCCTGTCAATTGTC
AAACGCACAGTTTTTTTTTATGTTTTTCACCCGATGCCGTCCTTGTGAGA
CGGGCTTCGAAATCCTTCTCGAAGACACGATCGGACGGGCCGCCACCGGC
AACAATTTTCACACTCCCTGGAGGTGACTGTTGGTTTTTTGCGAACGCAC
GCCTCGGCGAGTTTTTCCGCGAGAGGGGGCATCTGAACAACTTTCTAGCT
GCGAAAAGCCACCTCATCCACTTAATCTGTTACGCTGGCCCGCGTAAAGA
CGTTTCTTCTATTTTTCTTTATGGTGTGATCGAATCGGAGAGCCCCATGG
CCATCAACTGGTGTAACAGCTACCAGTACGTAAAGAGGCGTAGTGGCGAA
CTAGATCTGGCGTGTTTCTTAACTGCACATGGCATGGCTGCCGGTTCGAA
GCCAGAGCTTCAACGACTCGGTATTGCGTACGCATACGAATTGTTCTTTG
GGCCCCGTCGTCCAATCTTCTCCCTCTTGCGACCCTCCTGTCGGGGTACA
AGTCTACGCAGGAAAAAGTGTGGAATGGACTAAGTTGGTGAAGGGTTTCG
TTTAGGGTGTGTGTGCCCCCTCCTTGGTCGTTTTTCGTGATCATCTTGCT
GTCTTTTGCGTAGGAAGTCCGTCTGGGGACTAGAAGGCCGTGTTGCCGTT
TTTCTATCGCCATAAGAACACTGGTCGCCCCAACGATCTATTGGTAAGCC
GTCGTGAACCCAGGCGTTTTGAATCCCTTGGCAACCCTGACGTGCGTCCG
GCACCCTAGCTCCCACTTAATTTCAATGCTCTCAGCCTATCCACTCGCCG
TAGACCGTGTCCCCACCTGCTACTTGTCGGTACCAGAAGGACATCGCAAT
ATCCATGGCCTTTGGATTCAGGGCTCGTTATTTTTGCGGCGGCAGTGATA
TCCCGCCCTTGCGCTAACCATAGTCCCGCTCGCTGTTGAGAGTCCATCAG
TGTTTTGCCGGCATCCCACTTGGTTTTCCTACATTCAGATTACGGGGCGA
GCGCGGAGCTAAGCCTGAGTGCCATGTCCTAGCTAGATCTCTCCAGCCCA
CGCGAGTGGCTGATACACAGTAAGCACGGTAGTGCCGTCGGGTAGAATCT
GCGAGGACCACCACATACTTACCCACACATGAAAGGTTTCTCGCAGAGTG
GGGTTGTGGTCACACTTTTTTTCCAAGACACGGTCAAGGTGCACAAAAAA
TAAGCAAATTGTGCAACTAACAACCTTTGCTGGTGTGTTTATCAACAAGC
GCAGGCGCACCAGAACCAGTCTCATCGCATGTGTCGCGCCAAACAACAAG
TTGACCAATCTCCCTTGTTCGTTTTCGCCGTGGTGGTTCGGAGAGTGTCA
TCTTGTTCAGGTGGTGCCACTCTTCTTGCGCTAGTGCTGCCACTTGGTTC
ATGTTTGTTTCCTCCCACATGATTTCTGCTCACCTCTTGCTCAAGAGGTT
CCAGGCTATTCACCGCGCTTCTGCTGCTGCTGCCGTCGCCGCCACGATGT
TGTCATTCCGTTTTTTCTTGTTGTACTCAGGACACATTCGAAGACTTTCC
TGTATGCGTCCACTGGTTCAGACAATTTATGGCGGCGGCGGCGGGGATAT
GTGTGGGGTTCGCGGGAGTCACTGGATGGTTCGGGCTCGTTGGGTGAGCA
AGTTGTGAGCGAATTAACTTCGTCACTGAGCGGCACGTGGTTGCCCGATT
CCTTTCCCAGGCCTTCGTTCGCCACAATGTGGCTCGTGTGTTGTCTACTT
TGCGCACATGAATCGTTTGGGATGGCGCGGACTGTTCCTCAAGACTTCCC
TCCTTTCCTGCAGATATCAATGTTGAGTAGATGAATGACCAACATTCGGC
ACCAATCACACGAAGAATGCAATAGTTTTGTATCCTCCCTGCCGGCCCTC
GCCCGGGTGGGGACCAAACTTGGAGGCGAAATGTCCCCGCAATGGAAAGG
GAAGCGTCAAATGGCCAAAGATCATTGGATGGTAGAGTTCTGTGTTTTTT
ACGCTTCCGCTGGCGTGCCGTGGTGGGGTGCATGTGTCATGTCGCCTACA
CATGAGGTGGTGCATGGCAAATGATTCATTGAAGTCACCCCTGCTTGTTC
GCGGGGTTCGATGCACACCCTGACCAGGCCTTGCGAGGGTTTCAGTCTCG
CATTGGCGAGTGTCGCTAGCCCTTTCCCCGCTGAGACACTGCCAGAGCGA
GGCACATTGAATGAAAGGTTGTGTAATTCTTTGTGACGTGCTTACATCCA
CCGAAATGAAGCGTGAGAGTCACCGTCCGCCCGAATGAACAATGCGATAA
TCTCCCCACACTATTTGTATCCGTCCAAGTTTCGTACTTCCAGTGGCATG
TTTTGGCGACACGAGTTATACACTCCCTGCTGCGGTTTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1454:10071..14412+

>mRNA_Ecto-sp13_S_contig1454.3491.1 ID=mRNA_Ecto-sp13_S_contig1454.3491.1|Name=mRNA_Ecto-sp13_S_contig1454.3491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1454:10071..14412+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTCCACTGGTTCAGACAATTTATGGCGGCGGCGGCGGGGATATGTG
TGGGGTTCGCGGGAGTCACTGGATGGTTCGGGCTCGTTGGTTTCGTACTT
CCAGTGGCATGTTTTGGCGACACGAGTTATACACTCCCTGCTGCGGTTTT
TGA
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