mRNA_Ecto-sp13_S_contig14531.3486.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14531.3486.1 vs. uniprot
Match: D7FIH1_ECTSI (Eukaryotic translation initiation factor 4E like2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH1_ECTSI) HSP 1 Score: 159 bits (401), Expect = 2.200e-47 Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1
Query: 1 QDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRCA 243
QDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFR A
Sbjct: 130 QDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRNA 210
BLAST of mRNA_Ecto-sp13_S_contig14531.3486.1 vs. uniprot
Match: A0A836CBD6_9STRA (Putative eukaryotic initiation factor 4E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBD6_9STRA) HSP 1 Score: 120 bits (301), Expect = 2.960e-32 Identity = 58/82 (70.73%), Postives = 70/82 (85.37%), Query Frame = 1
Query: 1 QDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNS-NEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRCA 243
QDLV A +GE FEEP VVG+GMA+RS+EDLLSVWN DNS N+ VRF IGE+LK +LDLEPST+IEYKH ++M+DMST+R A
Sbjct: 136 QDLVFAAIGECFEEPTVVGVGMAVRSKEDLLSVWNSDNSGNDAVRFAIGEKLKAILDLEPSTMIEYKHFASSMEDMSTYRHA 217
BLAST of mRNA_Ecto-sp13_S_contig14531.3486.1 vs. uniprot
Match: F0W9A8_9STRA (Eukaryotic initiation factor 4E putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W9A8_9STRA) HSP 1 Score: 113 bits (282), Expect = 1.270e-29 Identity = 53/81 (65.43%), Postives = 68/81 (83.95%), Query Frame = 1
Query: 1 QDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRCA 243
QDLV A +GE+F + NVVGI MAIRS+ED+LSVWN DNS + VRF+IGE+LK++L L+P+TLIEYK H +++DMSTFR A
Sbjct: 112 QDLVFAAIGELFGQANVVGIAMAIRSKEDMLSVWNADNSEDSVRFSIGEKLKEILMLDPNTLIEYKFHANSIRDMSTFRNA 192
BLAST of mRNA_Ecto-sp13_S_contig14531.3486.1 vs. uniprot
Match: A0A8K1CP93_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP93_PYTOL) HSP 1 Score: 111 bits (278), Expect = 5.340e-29 Identity = 54/81 (66.67%), Postives = 67/81 (82.72%), Query Frame = 1
Query: 1 QDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRCA 243
QDLV A VGE FEE +VVGI MAIRS+ED++SVWN DNSNE+ RF IGE+LK++L L+ +TLIEYK H +++DMSTFR A
Sbjct: 118 QDLVFAAVGEAFEELDVVGIAMAIRSKEDMISVWNADNSNEETRFKIGEKLKEILMLDANTLIEYKFHANSIKDMSTFRNA 198
BLAST of mRNA_Ecto-sp13_S_contig14531.3486.1 vs. uniprot
Match: M4BUU5_HYAAE (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4BUU5_HYAAE) HSP 1 Score: 107 bits (268), Expect = 1.570e-28 Identity = 52/81 (64.20%), Postives = 66/81 (81.48%), Query Frame = 1
Query: 1 QDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRCA 243
QDLV A +GE FEE +VVGI MAIRS+ED+LSVWN DNS++ RF IGE+LK++L L+ +TLIEYK H +++DMSTFR A
Sbjct: 27 QDLVFAAIGEAFEELDVVGIAMAIRSKEDMLSVWNADNSDDSTRFAIGEKLKEILMLDSNTLIEYKFHANSIRDMSTFRNA 107
BLAST of mRNA_Ecto-sp13_S_contig14531.3486.1 vs. uniprot
Match: A0A2D4BW06_PYTIN (RNA helicase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BW06_PYTIN) HSP 1 Score: 115 bits (287), Expect = 4.920e-28 Identity = 55/81 (67.90%), Postives = 68/81 (83.95%), Query Frame = 1
Query: 1 QDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRCA 243
QDLV A +GE FEE +VVGI MAIRS+ED+LSVWN DNSNE+ RF IGE+LK++L L+P+TLIEYK H +++DMSTFR A
Sbjct: 798 QDLVFAAIGEAFEELDVVGIAMAIRSKEDMLSVWNADNSNEETRFKIGEKLKEILMLDPNTLIEYKFHANSIKDMSTFRNA 878
BLAST of mRNA_Ecto-sp13_S_contig14531.3486.1 vs. uniprot
Match: A0A024TXL0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TXL0_9STRA) HSP 1 Score: 107 bits (267), Expect = 1.980e-27 Identity = 50/81 (61.73%), Postives = 67/81 (82.72%), Query Frame = 1
Query: 1 QDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRCA 243
QDL+ AV+GE FE NVVGI MA+RS+ED++SVWN DNS++ +RF IGE+LK++L L+ +TLIEYK H +++DMSTFR A
Sbjct: 111 QDLLFAVIGEAFETLNVVGIAMALRSKEDMISVWNADNSDDNIRFAIGEKLKEILMLDSNTLIEYKFHANSIRDMSTFRNA 191
BLAST of mRNA_Ecto-sp13_S_contig14531.3486.1 vs. uniprot
Match: A0A485KQ57_9STRA (Aste57867_10365 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQ57_9STRA) HSP 1 Score: 107 bits (268), Expect = 3.680e-27 Identity = 51/81 (62.96%), Postives = 67/81 (82.72%), Query Frame = 1
Query: 1 QDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRCA 243
QDL+ AV+GE FE NVVGI MA+RS+ED++SVWN DNS++ VRF IGE+LK++L L+ +TLIEYK H +++DMSTFR A
Sbjct: 154 QDLLFAVIGEAFETLNVVGIAMALRSKEDMISVWNADNSDDNVRFAIGEKLKEILMLDSNTLIEYKFHANSIRDMSTFRNA 234
BLAST of mRNA_Ecto-sp13_S_contig14531.3486.1 vs. uniprot
Match: A0A6V1NUK3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NUK3_HETAK) HSP 1 Score: 107 bits (267), Expect = 4.240e-27 Identity = 51/80 (63.75%), Postives = 67/80 (83.75%), Query Frame = 1
Query: 4 DLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRCA 243
DLVLAV+GE F EP+VVGIG+++R+REDLLSVWN DN+N VRF IGE+LK +L LE +T+IEYK + ++QDMS++R A
Sbjct: 140 DLVLAVIGEAFAEPDVVGIGLSVRAREDLLSVWNGDNTNNDVRFLIGEKLKTILGLEENTMIEYKTFKASLQDMSSYRNA 219
BLAST of mRNA_Ecto-sp13_S_contig14531.3486.1 vs. uniprot
Match: A0A024GBW3_9STRA (CBM20 domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GBW3_9STRA) HSP 1 Score: 112 bits (280), Expect = 4.380e-27 Identity = 52/81 (64.20%), Postives = 68/81 (83.95%), Query Frame = 1
Query: 1 QDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRCA 243
QDLV A +GE+F + NVVGI MAIRS+ED+LSVWN DN+ + VRF+IGE+LK++L L+P+TLIEYK H +++DMSTFR A
Sbjct: 1306 QDLVFAAIGEVFNQANVVGIAMAIRSKEDMLSVWNADNTEDSVRFSIGEKLKEILMLDPNTLIEYKFHANSIRDMSTFRNA 1386 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14531.3486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14531.3486.1 >prot_Ecto-sp13_S_contig14531.3486.1 ID=prot_Ecto-sp13_S_contig14531.3486.1|Name=mRNA_Ecto-sp13_S_contig14531.3486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=71bp MFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSback to top mRNA from alignment at Ecto-sp13_S_contig14531:3105..3707- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14531.3486.1 ID=mRNA_Ecto-sp13_S_contig14531.3486.1|Name=mRNA_Ecto-sp13_S_contig14531.3486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=603bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14531:3105..3707- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14531:3105..3707- >mRNA_Ecto-sp13_S_contig14531.3486.1 ID=mRNA_Ecto-sp13_S_contig14531.3486.1|Name=mRNA_Ecto-sp13_S_contig14531.3486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14531:3105..3707- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |