mRNA_Ecto-sp13_S_contig14531.3486.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14531.3486.1
Unique NamemRNA_Ecto-sp13_S_contig14531.3486.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14531.3486.1 vs. uniprot
Match: D7FIH1_ECTSI (Eukaryotic translation initiation factor 4E like2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH1_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 2.200e-47
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1
Query:    1 QDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRCA 243
            QDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFR A
Sbjct:  130 QDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRNA 210          
BLAST of mRNA_Ecto-sp13_S_contig14531.3486.1 vs. uniprot
Match: A0A836CBD6_9STRA (Putative eukaryotic initiation factor 4E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBD6_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.960e-32
Identity = 58/82 (70.73%), Postives = 70/82 (85.37%), Query Frame = 1
Query:    1 QDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNS-NEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRCA 243
            QDLV A +GE FEEP VVG+GMA+RS+EDLLSVWN DNS N+ VRF IGE+LK +LDLEPST+IEYKH  ++M+DMST+R A
Sbjct:  136 QDLVFAAIGECFEEPTVVGVGMAVRSKEDLLSVWNSDNSGNDAVRFAIGEKLKAILDLEPSTMIEYKHFASSMEDMSTYRHA 217          
BLAST of mRNA_Ecto-sp13_S_contig14531.3486.1 vs. uniprot
Match: F0W9A8_9STRA (Eukaryotic initiation factor 4E putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W9A8_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.270e-29
Identity = 53/81 (65.43%), Postives = 68/81 (83.95%), Query Frame = 1
Query:    1 QDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRCA 243
            QDLV A +GE+F + NVVGI MAIRS+ED+LSVWN DNS + VRF+IGE+LK++L L+P+TLIEYK H  +++DMSTFR A
Sbjct:  112 QDLVFAAIGELFGQANVVGIAMAIRSKEDMLSVWNADNSEDSVRFSIGEKLKEILMLDPNTLIEYKFHANSIRDMSTFRNA 192          
BLAST of mRNA_Ecto-sp13_S_contig14531.3486.1 vs. uniprot
Match: A0A8K1CP93_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP93_PYTOL)

HSP 1 Score: 111 bits (278), Expect = 5.340e-29
Identity = 54/81 (66.67%), Postives = 67/81 (82.72%), Query Frame = 1
Query:    1 QDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRCA 243
            QDLV A VGE FEE +VVGI MAIRS+ED++SVWN DNSNE+ RF IGE+LK++L L+ +TLIEYK H  +++DMSTFR A
Sbjct:  118 QDLVFAAVGEAFEELDVVGIAMAIRSKEDMISVWNADNSNEETRFKIGEKLKEILMLDANTLIEYKFHANSIKDMSTFRNA 198          
BLAST of mRNA_Ecto-sp13_S_contig14531.3486.1 vs. uniprot
Match: M4BUU5_HYAAE (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4BUU5_HYAAE)

HSP 1 Score: 107 bits (268), Expect = 1.570e-28
Identity = 52/81 (64.20%), Postives = 66/81 (81.48%), Query Frame = 1
Query:    1 QDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRCA 243
            QDLV A +GE FEE +VVGI MAIRS+ED+LSVWN DNS++  RF IGE+LK++L L+ +TLIEYK H  +++DMSTFR A
Sbjct:   27 QDLVFAAIGEAFEELDVVGIAMAIRSKEDMLSVWNADNSDDSTRFAIGEKLKEILMLDSNTLIEYKFHANSIRDMSTFRNA 107          
BLAST of mRNA_Ecto-sp13_S_contig14531.3486.1 vs. uniprot
Match: A0A2D4BW06_PYTIN (RNA helicase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BW06_PYTIN)

HSP 1 Score: 115 bits (287), Expect = 4.920e-28
Identity = 55/81 (67.90%), Postives = 68/81 (83.95%), Query Frame = 1
Query:    1 QDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRCA 243
            QDLV A +GE FEE +VVGI MAIRS+ED+LSVWN DNSNE+ RF IGE+LK++L L+P+TLIEYK H  +++DMSTFR A
Sbjct:  798 QDLVFAAIGEAFEELDVVGIAMAIRSKEDMLSVWNADNSNEETRFKIGEKLKEILMLDPNTLIEYKFHANSIKDMSTFRNA 878          
BLAST of mRNA_Ecto-sp13_S_contig14531.3486.1 vs. uniprot
Match: A0A024TXL0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TXL0_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.980e-27
Identity = 50/81 (61.73%), Postives = 67/81 (82.72%), Query Frame = 1
Query:    1 QDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRCA 243
            QDL+ AV+GE FE  NVVGI MA+RS+ED++SVWN DNS++ +RF IGE+LK++L L+ +TLIEYK H  +++DMSTFR A
Sbjct:  111 QDLLFAVIGEAFETLNVVGIAMALRSKEDMISVWNADNSDDNIRFAIGEKLKEILMLDSNTLIEYKFHANSIRDMSTFRNA 191          
BLAST of mRNA_Ecto-sp13_S_contig14531.3486.1 vs. uniprot
Match: A0A485KQ57_9STRA (Aste57867_10365 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQ57_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.680e-27
Identity = 51/81 (62.96%), Postives = 67/81 (82.72%), Query Frame = 1
Query:    1 QDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRCA 243
            QDL+ AV+GE FE  NVVGI MA+RS+ED++SVWN DNS++ VRF IGE+LK++L L+ +TLIEYK H  +++DMSTFR A
Sbjct:  154 QDLLFAVIGEAFETLNVVGIAMALRSKEDMISVWNADNSDDNVRFAIGEKLKEILMLDSNTLIEYKFHANSIRDMSTFRNA 234          
BLAST of mRNA_Ecto-sp13_S_contig14531.3486.1 vs. uniprot
Match: A0A6V1NUK3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NUK3_HETAK)

HSP 1 Score: 107 bits (267), Expect = 4.240e-27
Identity = 51/80 (63.75%), Postives = 67/80 (83.75%), Query Frame = 1
Query:    4 DLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRCA 243
            DLVLAV+GE F EP+VVGIG+++R+REDLLSVWN DN+N  VRF IGE+LK +L LE +T+IEYK  + ++QDMS++R A
Sbjct:  140 DLVLAVIGEAFAEPDVVGIGLSVRAREDLLSVWNGDNTNNDVRFLIGEKLKTILGLEENTMIEYKTFKASLQDMSSYRNA 219          
BLAST of mRNA_Ecto-sp13_S_contig14531.3486.1 vs. uniprot
Match: A0A024GBW3_9STRA (CBM20 domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GBW3_9STRA)

HSP 1 Score: 112 bits (280), Expect = 4.380e-27
Identity = 52/81 (64.20%), Postives = 68/81 (83.95%), Query Frame = 1
Query:    1 QDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRCA 243
            QDLV A +GE+F + NVVGI MAIRS+ED+LSVWN DN+ + VRF+IGE+LK++L L+P+TLIEYK H  +++DMSTFR A
Sbjct: 1306 QDLVFAAIGEVFNQANVVGIAMAIRSKEDMLSVWNADNTEDSVRFSIGEKLKEILMLDPNTLIEYKFHANSIRDMSTFRNA 1386          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14531.3486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIH1_ECTSI2.200e-4798.77Eukaryotic translation initiation factor 4E like2 ... [more]
A0A836CBD6_9STRA2.960e-3270.73Putative eukaryotic initiation factor 4E n=1 Tax=T... [more]
F0W9A8_9STRA1.270e-2965.43Eukaryotic initiation factor 4E putative n=1 Tax=A... [more]
A0A8K1CP93_PYTOL5.340e-2966.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M4BUU5_HYAAE1.570e-2864.20Uncharacterized protein n=2 Tax=Peronosporaceae Ta... [more]
A0A2D4BW06_PYTIN4.920e-2867.90RNA helicase n=1 Tax=Pythium insidiosum TaxID=1147... [more]
A0A024TXL0_9STRA1.980e-2761.73Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A485KQ57_9STRA3.680e-2762.96Aste57867_10365 protein n=1 Tax=Aphanomyces stella... [more]
A0A6V1NUK3_HETAK4.240e-2763.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A024GBW3_9STRA4.380e-2764.20CBM20 domain-containing protein n=2 Tax=Albugo Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14531contigEcto-sp13_S_contig14531:3105..3707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score143.3
Seed ortholog evalue4.4e-32
Seed eggNOG ortholog2880.D7FIH1
Model size243
KEGG koko:K03259
KEGG Pathwayko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04150,map04151,map04211,map04910
KEGG ModuleM00428
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5053@1,KOG1669@2759
Cds size213
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462775.8796506-CDS-Ecto-sp13_S_contig14531:3104..32211681462775.8796506-CDS-Ecto-sp13_S_contig14531:3104..3221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14531 3105..3221 -
1681462775.8926246-CDS-Ecto-sp13_S_contig14531:3581..36771681462775.8926246-CDS-Ecto-sp13_S_contig14531:3581..3677Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14531 3582..3677 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462775.900678-UTR-Ecto-sp13_S_contig14531:3677..37071681462775.900678-UTR-Ecto-sp13_S_contig14531:3677..3707Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14531 3678..3707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14531.3486.1prot_Ecto-sp13_S_contig14531.3486.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14531 3105..3677 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14531.3486.1

>prot_Ecto-sp13_S_contig14531.3486.1 ID=prot_Ecto-sp13_S_contig14531.3486.1|Name=mRNA_Ecto-sp13_S_contig14531.3486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=71bp
MFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPS
TLIEYKHHQTAMQDMSTFRCA
back to top

mRNA from alignment at Ecto-sp13_S_contig14531:3105..3707-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14531.3486.1 ID=mRNA_Ecto-sp13_S_contig14531.3486.1|Name=mRNA_Ecto-sp13_S_contig14531.3486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=603bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14531:3105..3707- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGACCTGGTGTTGGCCGTGGTCGGAGAGATGTTCGAGGAGCCTAACGT GGTGGGCATCGGCATGGCCATCCGCTCGAGGGAGGACTTGCTTTCGGTGT GGAACGAGGACAATAGCAACGAGAAGGTACGTGTTGATACCCCAGACGCG ACAGGAGAAGCGAGCAATGGGACGCGACGGGTGCATGCCGACGAGGGTCC CCTGCGTCTGGCGTTTCTTCCCTCTTGCTCTTCCGTAGATCTATCGTGAT GATGCGGCAGGCACCCCCGATCCCTAGTATTTCGTCCCTTACGCCGCCAA GCTCGTACATAGTTCCGTTATCATTCCGGCCCGTTTGGACGCTGATCGTG TCTTGTTTCGGCGGTCGCTGATGTTTTTTTTCCTTTGCTCATGTCTCCTC TCGTTGCGGCTGCCGTTGCTGGTTGATTTTCCTTTGCTGGTGTCTCCCGT TTCGTTGGCAATGCCGCTCGTTGGCCGCGTCATCAGGTGAGGTTCAACAT CGGCGAGCGTCTTAAGCAGGTCCTGGACCTGGAGCCGTCGACTCTCATCG AGTACAAGCACCACCAGACCGCCATGCAGGACATGTCCACTTTCAGGTGC GCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14531:3105..3707-

>mRNA_Ecto-sp13_S_contig14531.3486.1 ID=mRNA_Ecto-sp13_S_contig14531.3486.1|Name=mRNA_Ecto-sp13_S_contig14531.3486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14531:3105..3707- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGAGGAGCCTAACGTGGTGGGCATCGGCATGGCCATCCGCTCGAG
GGAGGACTTGCTTTCGGTGTGGAACGAGGACAATAGCAACGAGAAGGTGA
GGTTCAACATCGGCGAGCGTCTTAAGCAGGTCCTGGACCTGGAGCCGTCG
ACTCTCATCGAGTACAAGCACCACCAGACCGCCATGCAGGACATGTCCAC
TTTCAGGTGCGCC
back to top