mRNA_Ecto-sp13_S_contig14505.3464.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14505.3464.1
Unique NamemRNA_Ecto-sp13_S_contig14505.3464.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14505.3464.1 vs. uniprot
Match: D7G750_ECTSI (Alanine transaminase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G750_ECTSI)

HSP 1 Score: 435 bits (1118), Expect = 4.810e-150
Identity = 217/220 (98.64%), Postives = 218/220 (99.09%), Query Frame = 1
Query:    1 QVLAEMGYPYSSSVELVSFHTVSKGVYGECGLRGGYMELTNIDQRVSDEMYKLCSINLSPNVTGQVAMGIMCNPPKPGSESYALHMREKEVLLQSLIRRARSIVDAFNSLDGVTCEETEGALYAFPKIDLPRAAIDAAKAAGKAPDVFYCLELLKETGLSCVPGSGFGQAEGTYHFRTTILPAEDTFQSVVDGFTSFHRGFMTKYGGXXXXGHSTWRARL 660
            +VLAEMGYPYSSSVELVSFHTVSKGVYGECGLRGGYMELTNIDQRVSDEMYKLCSINLSPNVTGQVAMGIMCNPPKPGSESYALHMREKEVLLQSLIRRARSIVDAFN LDGVTCEETEGALYAFPKIDLPRAAIDAAKAAGKAPDVFYCLELLKETGLSCVPGSGFGQAEGTYHFRTTILPAEDTFQSVVDGFTSFHRGFM KYGGXXXXGHSTWRARL
Sbjct:  271 KVLAEMGYPYSSSVELVSFHTVSKGVYGECGLRGGYMELTNIDQRVSDEMYKLCSINLSPNVTGQVAMGIMCNPPKPGSESYALHMREKEVLLQSLIRRARSIVDAFNGLDGVTCEETEGALYAFPKIDLPRAAIDAAKAAGKAPDVFYCLELLKETGLSCVPGSGFGQAEGTYHFRTTILPAEDTFQSVVDGFTSFHRGFMAKYGGXXXXGHSTWRARL 490          
BLAST of mRNA_Ecto-sp13_S_contig14505.3464.1 vs. uniprot
Match: A0A835Z6X1_9STRA (Alanine transaminase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6X1_9STRA)

HSP 1 Score: 298 bits (763), Expect = 2.090e-96
Identity = 143/207 (69.08%), Postives = 169/207 (81.64%), Query Frame = 1
Query:    1 QVLAEMGYPYSSSVELVSFHTVSKGVYGECGLRGGYMELTNIDQRVSDEMYKLCSINLSPNVTGQVAMGIMCNPPKPGSESYALHMREKEVLLQSLIRRARSIVDAFNSLDGVTCEETEGALYAFPKIDLPRAAIDAAKAAGKAPDVFYCLELLKETGLSCVPGSGFGQAEGTYHFRTTILPAEDTFQSVVDGFTSFHRGFMTKYGG 621
            +V+ E+G PY+S +ELVSFHTVSKGVYGECGLRGGYME+ N D R  +E+YK+CSINLSPNV GQVA+G+MCNPP+ G  S+   M EK  LL SL RRAR + DAFNSL+GV+C+ETEGALY+FP+I LP AA+ AA+AAGKAPDVFYCL LL ETGLS VPGSGFGQAEGT+HFRTTILPAE     VV+ F  FH+GF+ +Y G
Sbjct:  273 KVMCELGEPYTSGLELVSFHTVSKGVYGECGLRGGYMEMCNFDPRTVEEIYKICSINLSPNVPGQVAVGLMCNPPRRGDPSFDSFMAEKAELLASLKRRARLLTDAFNSLEGVSCQETEGALYSFPQITLPPAAVAAARAAGKAPDVFYCLALLSETGLSTVPGSGFGQAEGTFHFRTTILPAEADMGEVVELFKRFHKGFVQRYSG 479          
BLAST of mRNA_Ecto-sp13_S_contig14505.3464.1 vs. uniprot
Match: A0A7R9U3R8_9STRA (Alanine transaminase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3R8_9STRA)

HSP 1 Score: 283 bits (723), Expect = 4.270e-90
Identity = 134/205 (65.37%), Postives = 162/205 (79.02%), Query Frame = 1
Query:    1 QVLAEMGYPYSSSVELVSFHTVSKGVYGECGLRGGYMELTNIDQRVSDEMYKLCSINLSPNVTGQVAMGIMCNPPKPGSESYALHMREKEVLLQSLIRRARSIVDAFNSLDGVTCEETEGALYAFPKIDLPRAAIDAAKAAGKAPDVFYCLELLKETGLSCVPGSGFGQAEGTYHFRTTILPAEDTFQSVVDGFTSFHRGFMTKY 615
            +VLA MG P+SS VELVSFHTVSKG YGECG RGGY E TNID  +  ++YK+ SINLSPNV GQ+A+G M  PP PG  SYA + RE + ++QSL RRAR I DAFN L+GV C+E +GALY+FPKI LPR A++AA+AAGKAPD FYCL++L++TGLS VPGSGFGQ +GT+HFRTTILP E  F  +V+ FTSFH  FM +Y
Sbjct:  272 KVLASMGEPWSSQVELVSFHTVSKGAYGECGFRGGYFECTNIDPAIVQQVYKITSINLSPNVPGQIALGCMVTPPTPGMPSYAQYWREHDNVVQSLRRRARMITDAFNKLEGVECQECDGALYSFPKITLPRRALEAARAAGKAPDTFYCLKMLEDTGLSVVPGSGFGQKDGTFHFRTTILPPESQFDRIVNLFTSFHEKFMDEY 476          
BLAST of mRNA_Ecto-sp13_S_contig14505.3464.1 vs. uniprot
Match: A0A7S2XZX4_9STRA (Alanine transaminase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZX4_9STRA)

HSP 1 Score: 282 bits (721), Expect = 4.530e-90
Identity = 133/205 (64.88%), Postives = 162/205 (79.02%), Query Frame = 1
Query:    1 QVLAEMGYPYSSSVELVSFHTVSKGVYGECGLRGGYMELTNIDQRVSDEMYKLCSINLSPNVTGQVAMGIMCNPPKPGSESYALHMREKEVLLQSLIRRARSIVDAFNSLDGVTCEETEGALYAFPKIDLPRAAIDAAKAAGKAPDVFYCLELLKETGLSCVPGSGFGQAEGTYHFRTTILPAEDTFQSVVDGFTSFHRGFMTKY 615
            + + +MG PYS  +EL+SFHTVSKGVYGECGLRGGY ELTNID  V+  +YK+ SINLSPNV GQ+A+G+M NPP+PGS SY L   EK  LLQSL  RA+ + +AFNSL G++CE+ + +LYAFP+I LP+ A++AA AAGK+PDVFYCLELL ETG+S VPGSGFGQ EGT+HFRTTILP ED F+ VV  F  FH  FM +Y
Sbjct:  271 KTMMDMGSPYSEKLELISFHTVSKGVYGECGLRGGYFELTNIDPEVAGMLYKIASINLSPNVPGQIALGLMVNPPQPGSPSYDLLQEEKAALLQSLKNRAQMMSEAFNSLPGISCEQVDSSLYAFPQITLPQKALEAAAAAGKSPDVFYCLELLNETGISGVPGSGFGQEEGTFHFRTTILPPEDEFEEVVQMFKDFHSKFMAQY 475          
BLAST of mRNA_Ecto-sp13_S_contig14505.3464.1 vs. uniprot
Match: W7TAZ1_9STRA (Alanine transaminase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAZ1_9STRA)

HSP 1 Score: 285 bits (728), Expect = 6.980e-90
Identity = 135/211 (63.98%), Postives = 163/211 (77.25%), Query Frame = 1
Query:    4 VLAEMGYPYSSSVELVSFHTVSKGVYGECGLRGGYMELTNIDQRVSDEMYKLCSINLSPNVTGQVAMGIMCNPPKPGSESYALHMREKEVLLQSLIRRARSIVDAFNSLDGVTCEETEGALYAFPKIDLPRAAIDAAKAAGKAPDVFYCLELLKETGLSCVPGSGFGQAEGTYHFRTTILPAEDTFQSVVDGFTSFHRGFMTKYGGXXXXG 636
            V   MG PY+  +EL +FHT SKGVYGECG RGG MEL N D+RV+DE+YKL SINLSPNV GQV +G+M N P+PG ESYA + REK+ LL SL RRAR+I DAFNS +G+ C+ETEGA+Y+FPKI LP AA+ AAKAAGK+PDVFYCL+LL+ TG+S VPGSGF Q +GT+HFRTTILP E  FQ ++  F +FH  FM +Y G    G
Sbjct:  315 VALSMGSPYAQGLELATFHTASKGVYGECGFRGGVMELLNFDERVADELYKLASINLSPNVPGQVILGLMVNGPRPGDESYAQYAREKQDLLDSLRRRARAITDAFNSCEGIVCQETEGAMYSFPKITLPPAAMAAAKAAGKSPDVFYCLKLLETTGISTVPGSGFKQRDGTFHFRTTILPPESKFQDIIQRFLAFHSAFMAEYKGSTGRG 525          
BLAST of mRNA_Ecto-sp13_S_contig14505.3464.1 vs. uniprot
Match: A0A6S9FHA6_HETAK (Alanine transaminase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FHA6_HETAK)

HSP 1 Score: 277 bits (709), Expect = 2.810e-88
Identity = 135/220 (61.36%), Postives = 160/220 (72.73%), Query Frame = 1
Query:    1 QVLAEMGYPYSSSVELVSFHTVSKGVYGECGLRGGYMELTNIDQRVSDEMYKLCSINLSPNVTGQVAMGIMCNPPKPGSESYALHMREKEVLLQSLIRRARSIVDAFNSLDGVTCEETEGALYAFPKIDLPRAAIDAAKAAGKAPDVFYCLELLKETGLSCVPGSGFGQAEGTYHFRTTILPAEDTFQSVVDGFTSFHRGFMTKYGGXXXXGHSTWRARL 660
            +VL  MG PY    EL+ FHTVSKGVYGECG+RGGY   TNID  V+ +MYK+ SINLSPN+ G  A+ +MCNPP+PG  SY  + +EK  LLQSL  RAR + +AFNS  G+ C+E EGALYAFP+I LP AAI AAKAAGKAPDVFYCL LL+ TG+S VPGSGFGQ EGT+HFRTTILP E  F S++  F +FH  FM ++GG         RARL
Sbjct:  270 KVLHGMGAPYRDHCELIQFHTVSKGVYGECGMRGGYFHATNIDPEVAGQMYKILSINLSPNILGGAALALMCNPPRPGDASYPRYEQEKRELLQSLCNRARRMSEAFNSAPGINCQEVEGALYAFPQITLPPAAIAAAKAAGKAPDVFYCLRLLEATGISTVPGSGFGQKEGTFHFRTTILPPESEFDSILGDFLTFHNAFMEEFGGA-----GALRARL 484          
BLAST of mRNA_Ecto-sp13_S_contig14505.3464.1 vs. uniprot
Match: A0A383VTL2_TETOB (Alanine transaminase n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383VTL2_TETOB)

HSP 1 Score: 269 bits (687), Expect = 5.380e-85
Identity = 128/205 (62.44%), Postives = 156/205 (76.10%), Query Frame = 1
Query:    1 QVLAEMGYPYSSSVELVSFHTVSKGVYGECGLRGGYMELTNIDQRVSDEMYKLCSINLSPNVTGQVAMGIMCNPPKPGSESYALHMREKEVLLQSLIRRARSIVDAFNSLDGVTCEETEGALYAFPKIDLPRAAIDAAKAAGKAPDVFYCLELLKETGLSCVPGSGFGQAEGTYHFRTTILPAEDTFQSVVDGFTSFHRGFMTKY 615
            +V+ EMG PY+S VEL+SFHTVSKG  GECGLRGGY+E+ NI  +  +E+YK+CSINLSPN  GQVAM  + NPPKPGS S+  H +E+E  L SL RRAR + D FN+L+ V+C  TEGA+Y+FP++ LP  AI AAKAAGKAPDVFYCL LL+ETG+S VPGSGFGQAEGT+H RTTILP E+     V  F  FH  F+ +Y
Sbjct:  277 KVMKEMGEPYASGVELLSFHTVSKGTGGECGLRGGYVEMNNIHPKTVEELYKICSINLSPNGVGQVAMSCLVNPPKPGSPSFEQHKQEREAELASLRRRARMVTDGFNALEDVSCTFTEGAMYSFPQLKLPAKAIAAAKAAGKAPDVFYCLRLLEETGISTVPGSGFGQAEGTFHLRTTILPREEKMAEFVSKFRDFHEKFLKQY 481          
BLAST of mRNA_Ecto-sp13_S_contig14505.3464.1 vs. uniprot
Match: A0A6V1RQB2_HETAK (Alanine transaminase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RQB2_HETAK)

HSP 1 Score: 268 bits (685), Expect = 1.200e-84
Identity = 134/220 (60.91%), Postives = 156/220 (70.91%), Query Frame = 1
Query:    1 QVLAEMGYPYSSSVELVSFHTVSKGVYGECGLRGGYMELTNIDQRVSDEMYKLCSINLSPNVTGQVAMGIMCNPPKPGSESYALHMREKEVLLQSLIRRARSIVDAFNSLDGVTCEETEGALYAFPKIDLPRAAIDAAKAAGKAPDVFYCLELLKETGLSCVPGSGFGQAEGTYHFRTTILPAEDTFQSVVDGFTSFHRGFMTKYGGXXXXGHSTWRARL 660
            +VL +MG  Y++  EL+SFH++SKG YGECG RGGY EL NID R   E +KL SINL P V  QV MGIM NPPKPG  SY  + RE   +L S+ RRAR I D FNS++GVTC+E +GA+Y+FPKIDLP  A+ AA AAGKAPDVFYCLELL+ TG+S VPGSGFGQ  GT+H RTTILP E  F  V     +FH GFM KYGG    G    RARL
Sbjct:  270 KVLNDMGGRYAAECELISFHSISKGPYGECGWRGGYFELHNIDPRTKQEWFKLASINLCPTVPSQVIMGIMVNPPKPGEPSYEGYFREHGEILASMARRARLITDTFNSMEGVTCQEADGAMYSFPKIDLPPGAVAAAAAAGKAPDVFYCLELLRATGISTVPGSGFGQKAGTFHIRTTILPQEAKFAEVCAKLKAFHEGFMAKYGGAAGAGV---RARL 486          
BLAST of mRNA_Ecto-sp13_S_contig14505.3464.1 vs. uniprot
Match: A0A2V0P7H4_9CHLO (Alanine transaminase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P7H4_9CHLO)

HSP 1 Score: 264 bits (674), Expect = 1.450e-82
Identity = 129/205 (62.93%), Postives = 152/205 (74.15%), Query Frame = 1
Query:    1 QVLAEMGYPYSSSVELVSFHTVSKGVYGECGLRGGYMELTNIDQRVSDEMYKLCSINLSPNVTGQVAMGIMCNPPKPGSESYALHMREKEVLLQSLIRRARSIVDAFNSLDGVTCEETEGALYAFPKIDLPRAAIDAAKAAGKAPDVFYCLELLKETGLSCVPGSGFGQAEGTYHFRTTILPAEDTFQSVVDGFTSFHRGFMTKY 615
            +V+ EMG PYS+  EL+SFHTVSKG  GECGLRGGY+E+TNI     +EMYK+ SINLSP   GQVAM  M NPPKPGS S+    +E+E  L SL RRA  + D FNSL+GVTC  TEGA+Y+FP++ LP  A+ AAKAAGKAPDVFYCL LL+ETG+S VPGSGFGQAEGT+H RTTILP E+     V  F  FH  FM +Y
Sbjct:  319 KVMMEMGAPYSTGTELLSFHTVSKGSGGECGLRGGYIEMTNIHPGAVEEMYKIASINLSPGTVGQVAMSCMVNPPKPGSPSFEQWKKEREGELASLRRRAHMVTDGFNSLEGVTCNFTEGAMYSFPRLHLPPKAVAAAKAAGKAPDVFYCLRLLEETGISTVPGSGFGQAEGTFHLRTTILPREEKMAEFVKLFRDFHNKFMAQY 523          
BLAST of mRNA_Ecto-sp13_S_contig14505.3464.1 vs. uniprot
Match: A0A061RA11_9CHLO (Alanine transaminase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RA11_9CHLO)

HSP 1 Score: 262 bits (670), Expect = 6.060e-82
Identity = 126/205 (61.46%), Postives = 155/205 (75.61%), Query Frame = 1
Query:    1 QVLAEMGYPYSSSVELVSFHTVSKGVYGECGLRGGYMELTNIDQRVSDEMYKLCSINLSPNVTGQVAMGIMCNPPKPGSESYALHMREKEVLLQSLIRRARSIVDAFNSLDGVTCEETEGALYAFPKIDLPRAAIDAAKAAGKAPDVFYCLELLKETGLSCVPGSGFGQAEGTYHFRTTILPAEDTFQSVVDGFTSFHRGFMTKY 615
            +V  E+G PY S +E++ FHTVSKG  GECGLRGGY+E+ NI Q   DE+YK+ SINLSPNV GQVAM +M NPPKPG +SY  H  EK+ +L SL  RA  + + FNSL+GVTC  TEGA+Y+FP+I LP+ A+DAAKAAGKAPDVFYCL+LL+ TG+S VPGSGFGQ  GT+H RTTILP  +  + VV   T FH+ FM +Y
Sbjct:  321 RVAHELGEPYRSGLEMMCFHTVSKGSLGECGLRGGYVEMVNIHQGTVDEVYKIASINLSPNVPGQVAMSLMVNPPKPGQQSYESHAAEKKGILDSLRERAHIMTNGFNSLEGVTCNFTEGAMYSFPQIRLPQKAMDAAKAAGKAPDVFYCLKLLEATGISTVPGSGFGQEPGTFHLRTTILPPVEQMKEVVTLMTDFHKKFMDEY 525          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14505.3464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G750_ECTSI4.810e-15098.64Alanine transaminase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835Z6X1_9STRA2.090e-9669.08Alanine transaminase n=1 Tax=Tribonema minus TaxID... [more]
A0A7R9U3R8_9STRA4.270e-9065.37Alanine transaminase (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S2XZX4_9STRA4.530e-9064.88Alanine transaminase n=1 Tax=Fibrocapsa japonica T... [more]
W7TAZ1_9STRA6.980e-9063.98Alanine transaminase n=2 Tax=Monodopsidaceae TaxID... [more]
A0A6S9FHA6_HETAK2.810e-8861.36Alanine transaminase n=1 Tax=Heterosigma akashiwo ... [more]
A0A383VTL2_TETOB5.380e-8562.44Alanine transaminase n=2 Tax=Scenedesmaceae TaxID=... [more]
A0A6V1RQB2_HETAK1.200e-8460.91Alanine transaminase n=1 Tax=Heterosigma akashiwo ... [more]
A0A2V0P7H4_9CHLO1.450e-8262.93Alanine transaminase n=1 Tax=Raphidocelis subcapit... [more]
A0A061RA11_9CHLO6.060e-8261.46Alanine transaminase n=1 Tax=Tetraselmis sp. GSL01... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14505contigEcto-sp13_S_contig14505:2380..4357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score427.6
Seed ortholog evalue3.6e-117
Seed eggNOG ortholog2880.D7G750
Preferred nameALAT
Model size663
KEGG rclassRC00006,RC00008,RC00018
KEGG koko:K00814,ko:K14272
KEGG ReactionR00258,R00369,R00372
KEGG Pathwayko00220,ko00250,ko00260,ko00630,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00220,map00250,map00260,map00630,map00710,map01100,map01110,map01120,map01130,map01200,map01210,map01230
KEGG ModuleM00171,M00532
Hectar predicted targeting categoryother localisation
GOsGO:0001666,GO:0003674,GO:0003824,GO:0004021,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005777,GO:0006950,GO:0008150,GO:0008152,GO:0008453,GO:0008483,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009853,GO:0009987,GO:0016020,GO:0016740,GO:0016769,GO:0036293,GO:0042579,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0047635,GO:0047958,GO:0048046,GO:0050896,GO:0070482
Exons4
EggNOG free text desc.alanine aminotransferase
EggNOG OGsCOG0436@1,KOG0258@2759
EC2.6.1.2,2.6.1.4,2.6.1.44
Cds size648
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462774.2966137-CDS-Ecto-sp13_S_contig14505:2379..25121681462774.2966137-CDS-Ecto-sp13_S_contig14505:2379..2512Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14505 2380..2512 -
1681462774.3108797-CDS-Ecto-sp13_S_contig14505:2938..31421681462774.3108797-CDS-Ecto-sp13_S_contig14505:2938..3142Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14505 2939..3142 -
1681462774.3227665-CDS-Ecto-sp13_S_contig14505:3785..39771681462774.3227665-CDS-Ecto-sp13_S_contig14505:3785..3977Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14505 3786..3977 -
1681462774.3323627-CDS-Ecto-sp13_S_contig14505:4223..43421681462774.3323627-CDS-Ecto-sp13_S_contig14505:4223..4342Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14505 4224..4342 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462774.347769-UTR-Ecto-sp13_S_contig14505:4342..43571681462774.347769-UTR-Ecto-sp13_S_contig14505:4342..4357Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14505 4343..4357 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14505.3464.1prot_Ecto-sp13_S_contig14505.3464.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14505 2380..4342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14505.3464.1

>prot_Ecto-sp13_S_contig14505.3464.1 ID=prot_Ecto-sp13_S_contig14505.3464.1|Name=mRNA_Ecto-sp13_S_contig14505.3464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=216bp
MGYPYSSSVELVSFHTVSKGVYGECGLRGGYMELTNIDQRVSDEMYKLCS
INLSPNVTGQVAMGIMCNPPKPGSESYALHMREKEVLLQSLIRRARSIVD
AFNSLDGVTCEETEGALYAFPKIDLPRAAIDAAKAAGKAPDVFYCLELLK
ETGLSCVPGSGFGQAEGTYHFRTTILPAEDTFQSVVDGFTSFHRGFMTKY
GGGGGGGHSTWRARL*
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mRNA from alignment at Ecto-sp13_S_contig14505:2380..4357-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14505.3464.1 ID=mRNA_Ecto-sp13_S_contig14505.3464.1|Name=mRNA_Ecto-sp13_S_contig14505.3464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1978bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14505:2380..4357- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGCTTGCCGAAATGGGGTACCCATACTCGAGCAGCGTGGAGCTGGT GTCCTTCCACACGGTTTCCAAGGGCGTGTACGGGGAGTGCGGGCTGAGGG GGGGCTACATGGAGCTCACCAACATCGATCAAAGGTACAAGGCCTCTTGA CGGATTGCCCTGTTTGTCGCCTGCGCGCGTGGACAAGGTGCTTTTGGCGC AAAAGGTTGCGTACTGCGGAGGTCACACGCTTAAGTCCCCCTCCTCCAAT GTAGAATAACGCTCCGTCCTCTCGAAGACACGTGGTCAATGGTGTAACCG CTACGGCATGTAAAACATAAGAGTACGCCCCCCCCCCTCCAACCATTTAA CGCTGCGCTCTTCTTTTGTGATTTCTACAGGGTGTCGGACGAGATGTACA AGCTGTGCTCCATCAATCTCTCTCCGAACGTGACGGGGCAGGTGGCCATG GGTATCATGTGTAACCCCCCAAAGCCCGGGTCGGAATCGTACGCTCTACA CATGCGGGAGAAGGAGGTGCTGCTGCAGTCGCTCATCCGACGGGCGAGGT CCATCGTCGACGCCTTTAACAGGTGAAGAAACGAAGGGCGTAAGAAGTCG TGCAGTGGAAGCCCCTGCTGTTAGATATCAGGATCTGACGGTTGCAACCG TCACAGGTTTGTACGTCAGTTTCTGGTTCCCCTCTTGCTTGTGTTGTTCG TGCGTGTGAAACTTCGCGTTGTGTTTTTCTGCCATCACGATCGACCCCGC CGACGGGCTGACCAAAGAAGAGACGTCAACCGTTCAGCGGGATAGATATG TGGTACTCTGTGTGATTTCTTGACGATGTGCGTCTAGAGGCACACGCACT CAACCTTTCAGACGGCGTCGCATTGCGTCTTGTCGTACCCTACGTTTCGT GTGTGCCTGTTTTTGGTTGGCATGTCGCGGCTTGGGTTTGTGCTCACACG ACCGCCCGTGCTGTCAATCAGGCCGTACCCAACATGTCTTGCTGCCCCGC GCCCCGCGGTCCCGCCTGTCTGTAGTGTTTATGTCTAATGGTCTGCCAGC ACAGTGCACTTGCGCACAACCGACCGCCCCTCCGAATCCCTTACCCACCC ATATGCCCCCTTCTCGGGGTACAACTGTGTACCGTGCTCTCCTTGTAGTG GTTTCTCTGTTTGTTTCTGCGTTACCCTGTTGACAATTTTTTCCCGTTCT GTAATCGTTCCACAGCTTGGACGGCGTCACCTGCGAGGAGACCGAAGGGG CTCTGTACGCCTTCCCCAAGATCGACCTCCCCCGCGCCGCGATCGACGCT GCGAAGGCCGCGGGCAAGGCCCCCGACGTATTCTACTGCCTCGAGCTGCT CAAGGAGACCGGCCTGTCGTGTGTGCCGGGTTCAGGGTTCGGCCAGGCAG AAGGAACGTATCACTTCCGGTAAGGCGTTCTGCTTGCTGTACACTTTTTT TGATGCCGTAGAACACGCTGGTGCTCAATCTGTGATTTTTTTGATTGAAA CACAACAATCTGTTGTTCCACGCAAATTTCTAGCATGTTTACTCGGAAAT CACCGACGCAGAAACAGCCTAGGCCGTCAAACATGCCTCTATCTCCCGGA GGGAAGCGTTGCTGTGGCGACGTTGTGCCCGCCAAATCATCGGCATTGAC TTCGAAGAATTGAGAATTCAACGCAAGTGAACGTCGTCCCCGTAAGGCGG CCTCGTACAGCGTTTTGTTGAAGCGACCTGGTGAATACTGTCCATTTTTC CCATTCGGTGCTTTTTCAACCTCCTCGTACCCCGCCCGCCGTTTCGTTTG TTGTTCGCCATTTGAAAATGCGTCATGAATCGACCACCATGACAGCACGA CTATCCTTCCCGCAGAGGACACGTTCCAGTCCGTTGTGGACGGTTTCACG TCATTCCATAGGGGCTTCATGACCAAGTACGGGGGCGGGGGCGGTGGAGG GCACTCAACGTGGCGCGCTCGCCTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14505:2380..4357-

>mRNA_Ecto-sp13_S_contig14505.3464.1 ID=mRNA_Ecto-sp13_S_contig14505.3464.1|Name=mRNA_Ecto-sp13_S_contig14505.3464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14505:2380..4357- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGTACCCATACTCGAGCAGCGTGGAGCTGGTGTCCTTCCACACGGT
TTCCAAGGGCGTGTACGGGGAGTGCGGGCTGAGGGGGGGCTACATGGAGC
TCACCAACATCGATCAAAGGGTGTCGGACGAGATGTACAAGCTGTGCTCC
ATCAATCTCTCTCCGAACGTGACGGGGCAGGTGGCCATGGGTATCATGTG
TAACCCCCCAAAGCCCGGGTCGGAATCGTACGCTCTACACATGCGGGAGA
AGGAGGTGCTGCTGCAGTCGCTCATCCGACGGGCGAGGTCCATCGTCGAC
GCCTTTAACAGCTTGGACGGCGTCACCTGCGAGGAGACCGAAGGGGCTCT
GTACGCCTTCCCCAAGATCGACCTCCCCCGCGCCGCGATCGACGCTGCGA
AGGCCGCGGGCAAGGCCCCCGACGTATTCTACTGCCTCGAGCTGCTCAAG
GAGACCGGCCTGTCGTGTGTGCCGGGTTCAGGGTTCGGCCAGGCAGAAGG
AACGTATCACTTCCGCACGACTATCCTTCCCGCAGAGGACACGTTCCAGT
CCGTTGTGGACGGTTTCACGTCATTCCATAGGGGCTTCATGACCAAGTAC
GGGGGCGGGGGCGGTGGAGGGCACTCAACGTGGCGCGCTCGCCTCTGA
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