mRNA_Ecto-sp13_S_contig1449.3452.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1449.3452.1
Unique NamemRNA_Ecto-sp13_S_contig1449.3452.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1449.3452.1 vs. uniprot
Match: A0A6H5K734_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K734_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 3.540e-68
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 1 
Query:   67 VVGMDGGHLQGEWNGMMLTLTCKDANNENIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEHSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNLEEK 378
            VVGMDGGHL+GEWNGMMLTLTCKDANNE IHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLE SKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILN EEK
Sbjct:    9 VVGMDGGHLKGEWNGMMLTLTCKDANNEMIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNSEEK 112
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BLAST of mRNA_Ecto-sp13_S_contig1449.3452.1 vs. uniprot
Match: A0A6H5LCT1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCT1_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 6.460e-65
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 1 
Query:   64 QVVGMDGGHLQGEWNGMMLTLTCKDANNENIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEHSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNLEEK 378
            +VVGMDGGHL+GEWNGMMLTLTCKDANNENIHVATVIGPKEDTSLYKTLLRNCKKN KMRDLLE SKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNLEEK
Sbjct:  192 KVVGMDGGHLKGEWNGMMLTLTCKDANNENIHVATVIGPKEDTSLYKTLLRNCKKNLKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNLEEK 296
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BLAST of mRNA_Ecto-sp13_S_contig1449.3452.1 vs. uniprot
Match: A0A6H5K043_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K043_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 2.840e-61
Identity = 95/104 (91.35%), Postives = 100/104 (96.15%), Query Frame = 1 
Query:   67 VVGMDGGHLQGEWNGMMLTLTCKDANNENIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEHSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNLEEK 378
            VVGMDGGHL+GEWNG+MLTLTCKDANNEN HVATVIGPKEDTSL+KTLLRN K NPKMRDLLE SKTTFFTDQHKGATCALRGEAPLAQHRYCLRHL+LNLEE+
Sbjct:   10 VVGMDGGHLKGEWNGVMLTLTCKDANNENSHVATVIGPKEDTSLHKTLLRNWK-NPKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLLLNLEEE 112
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BLAST of mRNA_Ecto-sp13_S_contig1449.3452.1 vs. uniprot
Match: A0A6H5JAG6_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG6_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 3.300e-61
Identity = 94/104 (90.38%), Postives = 100/104 (96.15%), Query Frame = 1 
Query:   64 QVVGMDGGHLQGEWNGMMLTLTCKDANNENIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEHSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNLEE 375
            +VVG DGGHL+GEWNGM+LTLTCKDANNE IHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLE SKT FFTDQHKGATCALRGEAPLAQHRYCLRH+ILN+E+
Sbjct:  169 KVVGKDGGHLKGEWNGMVLTLTCKDANNEMIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEDSKTIFFTDQHKGATCALRGEAPLAQHRYCLRHIILNIEK 272
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BLAST of mRNA_Ecto-sp13_S_contig1449.3452.1 vs. uniprot
Match: A0A6H5JW23_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW23_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 3.750e-61
Identity = 94/105 (89.52%), Postives = 100/105 (95.24%), Query Frame = 1 
Query:   64 QVVGMDGGHLQGEWNGMMLTLTCKDANNENIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEHSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNLEEK 378
            QVVGMDGG+L+GEWN MMLTL CKDANN+NIHVAT+IGPKEDTSLYKTLL NCKKNPKMRDLLE SKTTFFT QHKGATCALRGEAPLAQ+RYCLRHLILNL+EK
Sbjct:  172 QVVGMDGGYLKGEWNAMMLTLACKDANNKNIHVATMIGPKEDTSLYKTLLLNCKKNPKMRDLLEDSKTTFFTGQHKGATCALRGEAPLAQNRYCLRHLILNLKEK 276
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BLAST of mRNA_Ecto-sp13_S_contig1449.3452.1 vs. uniprot
Match: A0A6H5L490_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L490_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 1.370e-60
Identity = 97/105 (92.38%), Postives = 101/105 (96.19%), Query Frame = 1 
Query:   64 QVVGMDGGHLQGEWNGMMLTLTCKDANNENIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEHSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNLEEK 378
            +VVGMDGGHL+GEWNGMMLTLTCKDANNENIHVA VIGPKEDTSLY TLLRNCKKNPKMRDLLE SKTTFFTDQHK ATCALRGEAPLAQHR+CLRHLILN+EEK
Sbjct:  195 KVVGMDGGHLKGEWNGMMLTLTCKDANNENIHVAAVIGPKEDTSLYNTLLRNCKKNPKMRDLLEDSKTTFFTDQHKEATCALRGEAPLAQHRHCLRHLILNIEEK 299
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BLAST of mRNA_Ecto-sp13_S_contig1449.3452.1 vs. uniprot
Match: A0A6H5JUM0_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUM0_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 6.720e-60
Identity = 97/105 (92.38%), Postives = 101/105 (96.19%), Query Frame = 1 
Query:   64 QVVGMDGGHLQGEWNGMMLTLTCKDANNENIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEHSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNLEEK 378
            +VVGMDGGHL+GEWNGMMLTLTCKDA+NE I+VATVIGPKEDTSLYKTLLRNCK NPKMRDLLE SKTTFFTDQHKGATCALR EAPLAQHRYCLRHLILNLEEK
Sbjct:  234 KVVGMDGGHLKGEWNGMMLTLTCKDAHNEMINVATVIGPKEDTSLYKTLLRNCK-NPKMRDLLEDSKTTFFTDQHKGATCALRREAPLAQHRYCLRHLILNLEEK 337
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BLAST of mRNA_Ecto-sp13_S_contig1449.3452.1 vs. uniprot
Match: A0A6H5KMN6_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN6_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 9.590e-49
Identity = 76/94 (80.85%), Postives = 82/94 (87.23%), Query Frame = 1 
Query:   64 QVVGMDGGHLQGEWNGMMLTLTCKDANNENIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEHSKTTFFTDQHKGATCALRGEAPLAQHRYC 345
            +VVGMDG HL+G+WNG MLTLTCKDANNENIHVAT IGP E+T LYKTL+R CKKNPKMRD LE SKTTF+TDQHKG  CAL GEAPLAQHR C
Sbjct:  192 KVVGMDGAHLKGKWNGQMLTLTCKDANNENIHVATAIGPVENTDLYKTLIRGCKKNPKMRDFLEDSKTTFYTDQHKGGKCALEGEAPLAQHRNC 285
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BLAST of mRNA_Ecto-sp13_S_contig1449.3452.1 vs. uniprot
Match: A0A6H5K5N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N8_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.090e-35
Identity = 61/78 (78.21%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:   76 MDGGHLQGEWNGMMLTLTCKDANNENIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEHSKTTFFTDQHKGATCAL 309
            MDG HL+G+WNG MLTLTCKDANNENIHVAT IGP E+T LYKTL+R CKKNPKMRD LE SKTTF+TDQHKG    L
Sbjct:    1 MDGAHLKGKWNGQMLTLTCKDANNENIHVATAIGPVENTDLYKTLIRGCKKNPKMRDFLEDSKTTFYTDQHKGGKXKL 78
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1449.3452.1 vs. uniprot
Match: D7FT22_ECTSI (OSJNBb0118P14.3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT22_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 2.640e-14
Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:   76 MDGGHLQGEWNGMMLTLTCKDANNENIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEHSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLI 360
            +DG HL+G WNG++LT+T  DANN     A  +  +E+   Y+ LL     + +M+  L  + TT FTD  KGA  A+   APL + R+CL H++
Sbjct:   19 LDGAHLRGSWNGVILTITTTDANNNINLCAFAVVREENAKSYEYLLGKAMGSKRMKKFLNATTTTCFTDNDKGADAAMNKLAPLTEVRHCLEHIL 113
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1449.3452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K734_9PHAE3.540e-6896.15MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5LCT1_9PHAE6.460e-6596.19MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K043_9PHAE2.840e-6191.35MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JAG6_9PHAE3.300e-6190.38MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JW23_9PHAE3.750e-6189.52MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L490_9PHAE1.370e-6092.38MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JUM0_9PHAE6.720e-6092.38MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KMN6_9PHAE9.590e-4980.85MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5K5N8_9PHAE1.090e-3578.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT22_ECTSI2.640e-1440.00OSJNBb0118P14.3 n=1 Tax=Ectocarpus siliculosus Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1449contigEcto-sp13_S_contig1449:16457..16834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start0
Seed ortholog score61.6
Seed ortholog evalue3e-07
Seed eggNOG ortholog2711.XP_006469855.1
Model size378
KEGG koko:K17086
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2CN5X@1,2QU1T@2759,37T40@33090,3GGBN@35493
Cds size378
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462773.393581-CDS-Ecto-sp13_S_contig1449:16456..168341681462773.393581-CDS-Ecto-sp13_S_contig1449:16456..16834Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1449 16457..16834 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1449.3452.1prot_Ecto-sp13_S_contig1449.3452.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1449 16457..16834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1449.3452.1

>prot_Ecto-sp13_S_contig1449.3452.1 ID=prot_Ecto-sp13_S_contig1449.3452.1|Name=mRNA_Ecto-sp13_S_contig1449.3452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
FCVLTNCLNPFPPSLLYKKRPQVVGMDGGHLQGEWNGMMLTLTCKDANNE
NIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEHSKTTFFTDQHKGAT
CALRGEAPLAQHRYCLRHLILNLEEK
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mRNA from alignment at Ecto-sp13_S_contig1449:16457..16834-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1449.3452.1 ID=mRNA_Ecto-sp13_S_contig1449.3452.1|Name=mRNA_Ecto-sp13_S_contig1449.3452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1449:16457..16834- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTGCGTTTTGACGAATTGCCTTAACCCTTTCCCTCCCTCTTTGCTCTA
TAAAAAACGTCCTCAGGTCGTGGGGATGGATGGGGGACACCTCCAGGGAG
AGTGGAACGGGATGATGCTGACGCTGACGTGCAAGGACGCCAACAACGAG
AACATACACGTCGCGACGGTAATCGGACCCAAGGAGGACACCTCCCTCTA
CAAGACTTTGCTCCGCAACTGCAAGAAGAACCCGAAAATGAGGGACCTGC
TGGAACACTCGAAGACAACCTTCTTCACGGACCAGCACAAGGGGGCGACC
TGTGCGCTGCGGGGCGAGGCCCCGCTGGCGCAGCACCGGTACTGCTTGAG
GCACCTCATCCTAAACTTGGAGGAGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1449:16457..16834-

>mRNA_Ecto-sp13_S_contig1449.3452.1 ID=mRNA_Ecto-sp13_S_contig1449.3452.1|Name=mRNA_Ecto-sp13_S_contig1449.3452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1449:16457..16834- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTGCGTTTTGACGAATTGCCTTAACCCTTTCCCTCCCTCTTTGCTCTA
TAAAAAACGTCCTCAGGTCGTGGGGATGGATGGGGGACACCTCCAGGGAG
AGTGGAACGGGATGATGCTGACGCTGACGTGCAAGGACGCCAACAACGAG
AACATACACGTCGCGACGGTAATCGGACCCAAGGAGGACACCTCCCTCTA
CAAGACTTTGCTCCGCAACTGCAAGAAGAACCCGAAAATGAGGGACCTGC
TGGAACACTCGAAGACAACCTTCTTCACGGACCAGCACAAGGGGGCGACC
TGTGCGCTGCGGGGCGAGGCCCCGCTGGCGCAGCACCGGTACTGCTTGAG
GCACCTCATCCTAAACTTGGAGGAGAAG
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