mRNA_Ecto-sp13_S_contig14472.3443.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14472.3443.1
Unique NamemRNA_Ecto-sp13_S_contig14472.3443.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14472.3443.1 vs. uniprot
Match: D8LEJ8_ECTSI (Glycerol kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEJ8_ECTSI)

HSP 1 Score: 385 bits (990), Expect = 1.240e-129
Identity = 189/194 (97.42%), Postives = 192/194 (98.97%), Query Frame = 1 
Query:    1 MAGVLGLFFGTGEVTKDDMTAPAGKDQQASSPVYVASIDQGTSSSRCMVFGRDGSIVAEHQMEHEQFYPRPGCVEHDAEEIWRNVEMCVKSALNIAGLGAPDLAAVGITNQRESTLVWDRNTGTPLHPLIVWNDVRTESICRDLKTNGGADRFRGRTGLPISPYFSATKLMWLLDNVAGLRELAEKGDALFGTM 582
            MAGVLGLFFGTGEVTKDDMTAPAGKDQQAS PVYVASIDQGTSSSRC+VFG+DGSIVAEHQ+EHEQFYPRPGCVEHDAEEIWRNVEMCVKSALNIAGLGAPDLAAVGITNQRESTLVWDRNTGTPLHPLIVWNDVRTESICRDLK NGGADRFRGRTGLPISPYFSATKLMWLLDNVAGLRELAEKGDALFGTM
Sbjct:    1 MAGVLGLFFGTGEVTKDDMTAPAGKDQQAS-PVYVASIDQGTSSSRCIVFGKDGSIVAEHQIEHEQFYPRPGCVEHDAEEIWRNVEMCVKSALNIAGLGAPDLAAVGITNQRESTLVWDRNTGTPLHPLIVWNDVRTESICRDLKANGGADRFRGRTGLPISPYFSATKLMWLLDNVAGLRELAEKGDALFGTM 193
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14472.3443.1 vs. uniprot
Match: A0A2W4MG58_9CHLR (Glycerol kinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W4MG58_9CHLR)

HSP 1 Score: 217 bits (553), Expect = 3.100e-65
Identity = 99/161 (61.49%), Postives = 123/161 (76.40%), Query Frame = 1 
Query:  100 YVASIDQGTSSSRCMVFGRDGSIVAEHQMEHEQFYPRPGCVEHDAEEIWRNVEMCVKSALNIAGLGAPDLAAVGITNQRESTLVWDRNTGTPLHPLIVWNDVRTESICRDLKTNGGADRFRGRTGLPISPYFSATKLMWLLDNVAGLRELAEKGDALFGTM 582
            YVA+IDQGT+S+RC++F R G IVA  Q EH+Q YPRPG VEHDAEEIW   +  V++AL  AG G  D+ AVGITNQRE+T+VWDR TG P H  +VW D+RT++IC +L  +GG DRFR  TGLP++ YFS  K+ WLL+NV GLR  AE+GDALFGT+
Sbjct:    3 YVAAIDQGTTSTRCLLFDRSGQIVAADQKEHQQIYPRPGWVEHDAEEIWERTQSVVRAALQQAGCGPSDIVAVGITNQRETTVVWDRTTGRPYHNAVVWQDLRTDAICAELARDGGQDRFRAATGLPLATYFSGPKIRWLLENVPGLRAAAERGDALFGTI 163
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14472.3443.1 vs. uniprot
Match: A0A345XKR3_9ACTN (Glycerol kinase n=2 Tax=Streptomyces TaxID=1883 RepID=A0A345XKR3_9ACTN)

HSP 1 Score: 217 bits (553), Expect = 3.890e-65
Identity = 100/161 (62.11%), Postives = 125/161 (77.64%), Query Frame = 1 
Query:  100 YVASIDQGTSSSRCMVFGRDGSIVAEHQMEHEQFYPRPGCVEHDAEEIWRNVEMCVKSALNIAGLGAPDLAAVGITNQRESTLVWDRNTGTPLHPLIVWNDVRTESICRDLKTNGGADRFRGRTGLPISPYFSATKLMWLLDNVAGLRELAEKGDALFGTM 582
            ++A+IDQGT+SSRC+VF +DG IV+  Q EHEQ +P+PG VEHDA EIW NVE  V  AL+ AG+   D+ A+GITNQRE+TL+WDRNTG P+H  IVW D RT+S+CR+L  N G DRFR  TGLP++ YF+  K+ WLLDNV GLRE AE+G+ LFGTM
Sbjct:   10 FIAAIDQGTTSSRCIVFDKDGRIVSVDQKEHEQIFPKPGWVEHDAAEIWTNVEQVVSGALDKAGIARSDVKALGITNQRETTLLWDRNTGQPVHNAIVWQDTRTDSLCRELGRNVGQDRFRRETGLPLASYFAGPKIRWLLDNVDGLRERAERGELLFGTM 170
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14472.3443.1 vs. uniprot
Match: A0A2X0K756_9ACTN (Glycerol kinase n=5 Tax=Streptacidiphilus TaxID=228398 RepID=A0A2X0K756_9ACTN)

HSP 1 Score: 215 bits (547), Expect = 3.170e-64
Identity = 98/161 (60.87%), Postives = 122/161 (75.78%), Query Frame = 1 
Query:  100 YVASIDQGTSSSRCMVFGRDGSIVAEHQMEHEQFYPRPGCVEHDAEEIWRNVEMCVKSALNIAGLGAPDLAAVGITNQRESTLVWDRNTGTPLHPLIVWNDVRTESICRDLKTNGGADRFRGRTGLPISPYFSATKLMWLLDNVAGLRELAEKGDALFGTM 582
            Y+A+IDQGT+SSRC+VFG DG IVA  Q EH Q +P+PG VEHDAEEIW  V+  +  AL  AGL   D+ A+GITNQRE+T++WD+NTG P+H  +VW D RTE +C++L  N G DRFR  TGLP++ YF+  K+ WLLDNV GLRE AE+GD LFGTM
Sbjct:    8 YIAAIDQGTTSSRCIVFGADGRIVAVDQQEHSQIFPQPGWVEHDAEEIWTRVQSVISGALAKAGLTRDDIRAIGITNQRETTVLWDKNTGKPVHNALVWQDTRTEDLCKELGRNVGQDRFRRETGLPLASYFAGPKIRWLLDNVEGLRERAERGDILFGTM 168
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14472.3443.1 vs. uniprot
Match: UPI0005647201 (glycerol kinase GlpK n=1 Tax=Streptacidiphilus oryzae TaxID=348818 RepID=UPI0005647201)

HSP 1 Score: 215 bits (547), Expect = 3.240e-64
Identity = 97/161 (60.25%), Postives = 122/161 (75.78%), Query Frame = 1 
Query:  100 YVASIDQGTSSSRCMVFGRDGSIVAEHQMEHEQFYPRPGCVEHDAEEIWRNVEMCVKSALNIAGLGAPDLAAVGITNQRESTLVWDRNTGTPLHPLIVWNDVRTESICRDLKTNGGADRFRGRTGLPISPYFSATKLMWLLDNVAGLRELAEKGDALFGTM 582
            Y+A+IDQGT+SSRC++FG DG IV+  Q EH Q +P+PG VEHDA EIW  V+  ++ AL  AGL   D+ A+GITNQRE+TL+WD+NTG P+H  IVW D RTE +C++L  N G DRFR  TGLP+S YF+  K+ WLLDNV GLRE AE+G+ LFGTM
Sbjct:    9 YIAAIDQGTTSSRCIIFGADGRIVSVDQQEHRQIFPQPGWVEHDATEIWTRVQSVIRGALQKAGLSKDDIRAIGITNQRETTLLWDKNTGEPVHNAIVWQDTRTEGLCKELGRNVGQDRFRRETGLPLSSYFAGPKIRWLLDNVEGLRERAERGEILFGTM 169
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14472.3443.1 vs. uniprot
Match: A0A1A9QRV0_STRA9 (Glycerol kinase n=20 Tax=Streptomyces TaxID=1883 RepID=A0A1A9QRV0_STRA9)

HSP 1 Score: 214 bits (546), Expect = 4.370e-64
Identity = 97/161 (60.25%), Postives = 125/161 (77.64%), Query Frame = 1 
Query:  100 YVASIDQGTSSSRCMVFGRDGSIVAEHQMEHEQFYPRPGCVEHDAEEIWRNVEMCVKSALNIAGLGAPDLAAVGITNQRESTLVWDRNTGTPLHPLIVWNDVRTESICRDLKTNGGADRFRGRTGLPISPYFSATKLMWLLDNVAGLRELAEKGDALFGTM 582
            ++A+IDQGT+SSRC+VF RDG IV+  Q EHEQ +P+PG VEHDA EIW NV+  V  A+  AG+ + D+ A+GITNQRE+TL+WD+NTG P+H  IVW D RT+++CR+L  N G DRFR  TGLP++ YF+  K+ W+LDNV GLRE AE+GD LFGTM
Sbjct:   10 FIAAIDQGTTSSRCIVFDRDGRIVSVDQKEHEQIFPKPGWVEHDAAEIWTNVQEVVAGAIEKAGITSADVKAIGITNQRETTLLWDKNTGEPVHNAIVWQDTRTDALCRELGRNVGQDRFRRETGLPLASYFAGPKIRWMLDNVEGLRERAERGDILFGTM 170
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14472.3443.1 vs. uniprot
Match: A0A066YZJ2_9ACTN (Glycerol kinase n=32 Tax=Actinomycetia TaxID=1760 RepID=A0A066YZJ2_9ACTN)

HSP 1 Score: 214 bits (545), Expect = 6.010e-64
Identity = 100/161 (62.11%), Postives = 122/161 (75.78%), Query Frame = 1 
Query:  100 YVASIDQGTSSSRCMVFGRDGSIVAEHQMEHEQFYPRPGCVEHDAEEIWRNVEMCVKSALNIAGLGAPDLAAVGITNQRESTLVWDRNTGTPLHPLIVWNDVRTESICRDLKTNGGADRFRGRTGLPISPYFSATKLMWLLDNVAGLRELAEKGDALFGTM 582
            Y+A+IDQGT+SSRC++FG DG IVA  Q EH Q +P+PG VEHDA EIW  V+  V+ AL  AGL   D+ AVGITNQRE+T++WDR+TG P+H  IVW D RTE++CR+L  N G DRFR  TGLP++ YF+  K+ WLLDNV GLRE AE GD LFGTM
Sbjct:    5 YIAAIDQGTTSSRCILFGADGRIVAVEQQEHAQIFPQPGWVEHDAAEIWTRVQAVVRGALEKAGLTREDIRAVGITNQRETTVLWDRHTGEPVHHAIVWQDTRTEALCRELGRNVGQDRFRRETGLPLASYFAGPKIRWLLDNVEGLRERAEAGDILFGTM 165
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14472.3443.1 vs. uniprot
Match: A0A1H7UFH3_STRJI (Glycerol kinase n=22 Tax=Streptomycetaceae TaxID=2062 RepID=A0A1H7UFH3_STRJI)

HSP 1 Score: 214 bits (544), Expect = 8.850e-64
Identity = 98/161 (60.87%), Postives = 122/161 (75.78%), Query Frame = 1 
Query:  100 YVASIDQGTSSSRCMVFGRDGSIVAEHQMEHEQFYPRPGCVEHDAEEIWRNVEMCVKSALNIAGLGAPDLAAVGITNQRESTLVWDRNTGTPLHPLIVWNDVRTESICRDLKTNGGADRFRGRTGLPISPYFSATKLMWLLDNVAGLRELAEKGDALFGTM 582
            Y+A+IDQGT+SSRC+VFG DG IVA  Q EH Q +P+PG VEHDAEEIW  V+  V  AL  AGL   D+ A+GITNQRE+T++WD+NTG P+H  +VW D RTE +C++L  N G DRFR  TGLP++ YF+  K+ WLLDNV GLRE AE+G+ LFGTM
Sbjct:    8 YIAAIDQGTTSSRCIVFGADGRIVAVDQQEHSQIFPQPGWVEHDAEEIWTRVQSVVSGALAKAGLTRDDIRAIGITNQRETTVLWDKNTGKPVHNALVWQDTRTEELCKELGRNVGQDRFRRETGLPLASYFAGPKIRWLLDNVEGLRERAERGEILFGTM 168
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14472.3443.1 vs. uniprot
Match: A0A399HI41_9ACTN (Glycerol kinase n=2 Tax=Streptomyces sp. YIM 130001 TaxID=2259644 RepID=A0A399HI41_9ACTN)

HSP 1 Score: 214 bits (544), Expect = 1.060e-63
Identity = 98/161 (60.87%), Postives = 125/161 (77.64%), Query Frame = 1 
Query:  100 YVASIDQGTSSSRCMVFGRDGSIVAEHQMEHEQFYPRPGCVEHDAEEIWRNVEMCVKSALNIAGLGAPDLAAVGITNQRESTLVWDRNTGTPLHPLIVWNDVRTESICRDLKTNGGADRFRGRTGLPISPYFSATKLMWLLDNVAGLRELAEKGDALFGTM 582
            ++A+IDQGT+SSRC+VF  DG IVA  Q EHEQ +P+PG VEHDA+EIW NVE  V  A+  AG+ + D+ A+GITNQRE+TL+WD+NTG P+H  IVW D RT+++C++L  N G DRFR  TGLP++ YF+  K+ WLLDNV GLRE AE+GD LFGTM
Sbjct:   19 FIAAIDQGTTSSRCIVFDTDGRIVAVDQREHEQIFPKPGWVEHDAKEIWANVESVVAGAVAKAGITSADVKAIGITNQRETTLLWDKNTGEPVHNAIVWQDTRTDALCKELGRNVGQDRFRRETGLPLASYFAGPKVRWLLDNVEGLRERAERGDILFGTM 179
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14472.3443.1 vs. uniprot
Match: A0A2N5XFK1_9ACTN (Glycerol kinase n=2 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A2N5XFK1_9ACTN)

HSP 1 Score: 213 bits (543), Expect = 1.300e-63
Identity = 101/169 (59.76%), Postives = 130/169 (76.92%), Query Frame = 1 
Query:   76 DQQASSPVYVASIDQGTSSSRCMVFGRDGSIVAEHQMEHEQFYPRPGCVEHDAEEIWRNVEMCVKSALNIAGLGAPDLAAVGITNQRESTLVWDRNTGTPLHPLIVWNDVRTESICRDLKTNGGADRFRGRTGLPISPYFSATKLMWLLDNVAGLRELAEKGDALFGTM 582
            D ++S P ++A+IDQGT+SSRC+VF RDG IV+  Q EHEQ +PRPG VEHDA EIW NV+  V  AL+ AG+ A D+ A+GITNQRE+TL+W++ TG P+H  IVW D RT+++CR+L  N G DRFR  TGLP++ YF+  K+ WLLDNV GLRE AE+G+ LFGTM
Sbjct:    7 DTRSSGP-FIAAIDQGTTSSRCIVFDRDGRIVSVDQKEHEQIFPRPGWVEHDAAEIWDNVQEVVSGALDKAGITAEDIKALGITNQRETTLLWEKATGRPVHNAIVWQDTRTDALCRELGRNVGQDRFRRETGLPLASYFAGPKIRWLLDNVEGLRERAERGEILFGTM 174
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14472.3443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEJ8_ECTSI1.240e-12997.42Glycerol kinase n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
A0A2W4MG58_9CHLR3.100e-6561.49Glycerol kinase n=1 Tax=Chloroflexi bacterium TaxI... [more]
A0A345XKR3_9ACTN3.890e-6562.11Glycerol kinase n=2 Tax=Streptomyces TaxID=1883 Re... [more]
A0A2X0K756_9ACTN3.170e-6460.87Glycerol kinase n=5 Tax=Streptacidiphilus TaxID=22... [more]
UPI00056472013.240e-6460.25glycerol kinase GlpK n=1 Tax=Streptacidiphilus ory... [more]
A0A1A9QRV0_STRA94.370e-6460.25Glycerol kinase n=20 Tax=Streptomyces TaxID=1883 R... [more]
A0A066YZJ2_9ACTN6.010e-6462.11Glycerol kinase n=32 Tax=Actinomycetia TaxID=1760 ... [more]
A0A1H7UFH3_STRJI8.850e-6460.87Glycerol kinase n=22 Tax=Streptomycetaceae TaxID=2... [more]
A0A399HI41_9ACTN1.060e-6360.87Glycerol kinase n=2 Tax=Streptomyces sp. YIM 13000... [more]
A0A2N5XFK1_9ACTN1.300e-6359.76Glycerol kinase n=2 Tax=unclassified Streptomyces ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14472contigEcto-sp13_S_contig14472:964..4408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score390.6
Seed ortholog evalue4.3e-106
Seed eggNOG ortholog2880.D8LEJ8
Model size582
KEGG rclassRC00002,RC00017
KEGG koko:K00864
KEGG ReactionR00847
KEGG Pathwayko00561,ko01100,ko03320,ko04626,map00561,map01100,map03320,map04626
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004370,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005975,GO:0006066,GO:0006071,GO:0006072,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006793,GO:0006796,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009058,GO:0009987,GO:0016052,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019400,GO:0019405,GO:0019563,GO:0019637,GO:0019751,GO:0033554,GO:0042802,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044255,GO:0044262,GO:0044275,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046164,GO:0046167,GO:0046174,GO:0046486,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0052646,GO:0071704,GO:0090407,GO:1901135,GO:1901137,GO:1901575,GO:1901576,GO:1901615,GO:1901616
Exons4
EggNOG free text desc.glycerol kinase activity
EggNOG OGsCOG0554@1,KOG2517@2759
Ec32 ortholog descriptionglycerol kinase
Ec32 orthologEc-21_004370.1
EC2.7.1.30
Cds size582
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462772.5888898-CDS-Ecto-sp13_S_contig14472:963..12091681462772.5888898-CDS-Ecto-sp13_S_contig14472:963..1209Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14472 964..1209 +
1681462772.599256-CDS-Ecto-sp13_S_contig14472:2803..29821681462772.599256-CDS-Ecto-sp13_S_contig14472:2803..2982Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14472 2804..2982 +
1681462772.6074135-CDS-Ecto-sp13_S_contig14472:3818..39501681462772.6074135-CDS-Ecto-sp13_S_contig14472:3818..3950Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14472 3819..3950 +
1681462772.615548-CDS-Ecto-sp13_S_contig14472:4383..44081681462772.615548-CDS-Ecto-sp13_S_contig14472:4383..4408Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14472 4384..4408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14472.3443.1prot_Ecto-sp13_S_contig14472.3443.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14472 964..4408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14472.3443.1

>prot_Ecto-sp13_S_contig14472.3443.1 ID=prot_Ecto-sp13_S_contig14472.3443.1|Name=mRNA_Ecto-sp13_S_contig14472.3443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=194bp
MAGVLGLFFGTGEVTKDDMTAPAGKDQQASSPVYVASIDQGTSSSRCMVF
GRDGSIVAEHQMEHEQFYPRPGCVEHDAEEIWRNVEMCVKSALNIAGLGA
PDLAAVGITNQRESTLVWDRNTGTPLHPLIVWNDVRTESICRDLKTNGGA
DRFRGRTGLPISPYFSATKLMWLLDNVAGLRELAEKGDALFGTM
back to top

mRNA from alignment at Ecto-sp13_S_contig14472:964..4408+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14472.3443.1 ID=mRNA_Ecto-sp13_S_contig14472.3443.1|Name=mRNA_Ecto-sp13_S_contig14472.3443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3445bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14472:964..4408+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGGTGTGCTCGGGCTGTTTTTCGGTACGGGGGAAGTCACCAAGGA
CGATATGACCGCTCCAGCGGGGAAGGATCAACAGGCCTCCTCCCCAGTGT
ATGTCGCGAGCATCGACCAGGGCACGAGCAGCTCCCGCTGCATGGTCTTC
GGCAGAGATGGAAGCATTGTGGCCGAGCACCAGATGGAGCATGAGCAATT
CTACCCTCGACCCGGATGTGTCGAGCATGATGCGGAGGAAATATGGGTAC
GTGCGCATGATCGAACAAAATAACGCTGTTAGCTGCTGCGTGCTGCGTAC
TAATGCCCAATTTGACAACCTTTCCAAGTTGAACATCATCGCGAATAGAC
GAGGGCTTGAGAGGTAAACAAGTCGAACTAACGGTTCGAACACCCTAAAG
GGCAAGAAGATATGGCATCTACATAGGGCTTGAATCAAGTTCCGGAGGGT
GAACGCTTTCTCTGATTATACATGTTCGTTTCAAGCCCCATCCATGTGCG
ATTACAAAAAGACCAACGCTAGTTGTATGCGTACGCCCGTGGGCAACGAT
CAGCAAAGCGATTCGCCCAACGGAGTTCGATGTAGCATGCTTCGAATATT
TGTGCATGTCCAGTGCAATCGGCGCGTGCCCTTCAGGCAGTAGAATGTGG
CACCAGATTTTGTTCATTTCCAACACTCGTTCATGACAACACGTACTGGC
ATGTGTTCCTACGGGAGGGGGTGTTGTAGCATTATTATATTTGTAGCAGA
GCACAGGGAAAAAAATGGGCAAACGACACAACCGGGTTGACCCTGCTGGT
CGAACAGCGACTCAGCTAGGTACATTTCACAGCGTCAAATGAGCCAAGCT
GATTGCTCAACGTCCACTTTTCACCCTGCCGTGTCATAAATAGCCCGGGG
TATACCCTACCACGGCTTCTATTCTCCAGAATTGTACCCTGATTTCGGAT
ATGGTCGCTAATCTGGCGGGAAATGGGACCCTTTCATCGGCCGTTTCCTC
CGCAGGAATTCACTGATCCAACCATAGGACATCAACCATGAACATTCCCT
CTCGAACCAAACAATGGCTTGTACACTGAGAAAATTCCGTCGGGAAAGCA
ACCGAGATACGAGCTGCTCTCAGAACGCGATCAATCCAGCATGGTTGCAG
GCAGCGCGGCTGACACAAAAGACTCAAGAGATGATGTGCGGATGGATGTG
TGGCGGCAAGCTCGTTGCGGCGGAGAAGTGGAAGGATACACACACGCGCA
CCGTTTCATCATTGGAATATACCCTACCTACTACAGAGAAATACCACAGA
TTTATGCTGGAGGAGCGGAGGCTTTGTGATGAGCTTCTGAACCCCACCCT
GATGTCCTAATATGTGGGCCTGACGAGCTATAGTCGGCAAGATGAACACA
TTGGCGTGGGATCACTAGGCGGATAATTTGTGCGCCTGCACTATGAAACT
CCTTCCATGATGATGCGCTTAGCGTGTGTGTGTGTGGCCTTCCGCCTCTC
AGCCACCGCGAGATCGCCGCCACACAAGCGCACATTTATTACATACCTTT
GAGTCGACGTGGCCACCATACCATACTGCTGCTTTCAAGTATGCTGGATA
CAAGCGCTGGGCATAGTTGTCTGTCACCACACGCATCATTGCCGCCGCTA
ACGAGGAAATCATTGCTTTGGCGCATGAGAAGCAAGCTCGCTCGCCAGCC
CATCTATTAGCACGAGCTTCGCCCTTCGTTCTGTCGCTCCAAATCTGTCT
CTATCTCTCTCTCTATCTCTCTCCCTCCCGCGTCCCTCCGTTCCTCCGCC
CCCCGCCTGCTTCCTTGTTTCCTCGTATGGCAACACACAGCGGAACGTGG
AGATGTGTGTGAAGTCTGCCCTCAACATTGCCGGCCTCGGCGCTCCCGAC
CTGGCTGCTGTGGGCATCACTAACCAGAGGGAGAGCACTCTGGTGTGGGA
TAGAAACACGGGGACCCCTCTCCACCCCCTCATCGTCTGGAACGACGTCC
GTACAGAGTCCATTTGCAGGTATCCATGAGTTGTTGGCGGTGGTGGCGGT
GCTGCTGCTGCGGATGTTGTCGATGCCGTTGATCCCACCATCAATATGTC
CCTCCTGATTGTCTAGCATGCGCCGTGTCGAGCTGGGATCAACGCTTGCC
GAGAACTGTCCGCGTCGAGCATATAGCTGCAGGGAAGACTCTTATGTGGT
GTGCGATGGACGGGACGTAATCAACCTCAGTCCAGCTGCTCTGCGAGAAA
AACAACCCTATGAACAGTCGGAACGTTCAAACAAACGCTTGCCTGACGCT
ACCATCCACGCAGTCGGAGTGATTCATTGTTGCGGGAAGCATCGCCTTTT
GAACCCCGAACGTTAACTCGCCTTTCTTTAAGACCACATTTGTTGCTTAC
CGTCTTCTGAACATTTGAGTGTCGCCTGGCGTCCGGTAGTTCAGCTAGGT
GTGGGCTTCACACCGCGGTGACGAGTTGTTTCTCTTCATGCTTCGTACCT
AGAGCTGATAAAAGCTCTTGTTCCCGAGGAACGGCCAACCCCTCATTTCG
ACGTTGAAGGAAGGCGTGAACCGAAGAGGACTTACTGTGTTTTGCCCCGG
GTCGATGTCCGTTGAGACAGACAAGGTTGGAGAAACTGCGGGGGTCGGCC
TACTGAAATCGCTACAGTACAACACAACAGAGCAACTTTCCTCGGAAAAA
CAAATGGTCATGGTCAAGATAGAAGAGAGTCATTTTCGCCATGTCGTTGG
GGAATGGAACCTGCGCCCCCCTCATCAAGTAGCGTGCAAACCTTTTGGCG
GCCCGCCCTTCCCCCCCCGACTGCACTCGCATCGCGCACGATGTTCAATC
AAAAGAGATCTCAAGACCAATGGCGGCGCCGACCGCTTCCGGGGTAGGAC
GGGACTGCCCATCTCCCCCTACTTCTCCGCGACCAAGCTCATGTGGCTTC
TAGACAACGTGGCCGGCCTTCGCGAGTTGGCGGAAAAGTGAGCGTTGCCT
GTGCCTTAGTAGCAAGCTAGAGCAACATCGTGGCGTTCAGAATCAGGTCA
TGGGTAGTACTCGGTATGATATTGGCAGTCCTGCCGTTGTCTGCAGGCCA
AAGATGCGAGCATGCTCACAAACCGGGGGCGCAGTACGTCGGCGTTTCGG
CGGCCGGGTAGACCACAGGTGGGATATTTCTGGTGTACATGGAACCAATC
GGGTACGACCTAGGGCGGGGGGAGCCACAACCAATCTGTTATCCTTTTTG
CAGCCCCGCATTGTGGCGGGAAACTCTCACCGGCGAAGCCGTAGTCGTGA
CATGTGTCACCCGCGACAACAAGAGGCATAGCTGTTTCACAATACTGGCA
AAGGTAAAATTTCACGTTCTTCTTCCTTCACCCGACCGCTGCCAACACCG
CCAACACTCTTCGGCGGCAGGGGCGACGCTCTGTTCGGGACGATG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14472:964..4408+

>mRNA_Ecto-sp13_S_contig14472.3443.1 ID=mRNA_Ecto-sp13_S_contig14472.3443.1|Name=mRNA_Ecto-sp13_S_contig14472.3443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14472:964..4408+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGGTGTGCTCGGGCTGTTTTTCGGTACGGGGGAAGTCACCAAGGA
CGATATGACCGCTCCAGCGGGGAAGGATCAACAGGCCTCCTCCCCAGTGT
ATGTCGCGAGCATCGACCAGGGCACGAGCAGCTCCCGCTGCATGGTCTTC
GGCAGAGATGGAAGCATTGTGGCCGAGCACCAGATGGAGCATGAGCAATT
CTACCCTCGACCCGGATGTGTCGAGCATGATGCGGAGGAAATATGGCGGA
ACGTGGAGATGTGTGTGAAGTCTGCCCTCAACATTGCCGGCCTCGGCGCT
CCCGACCTGGCTGCTGTGGGCATCACTAACCAGAGGGAGAGCACTCTGGT
GTGGGATAGAAACACGGGGACCCCTCTCCACCCCCTCATCGTCTGGAACG
ACGTCCGTACAGAGTCCATTTGCAGAGATCTCAAGACCAATGGCGGCGCC
GACCGCTTCCGGGGTAGGACGGGACTGCCCATCTCCCCCTACTTCTCCGC
GACCAAGCTCATGTGGCTTCTAGACAACGTGGCCGGCCTTCGCGAGTTGG
CGGAAAAGGGCGACGCTCTGTTCGGGACGATG
back to top