mRNA_Ecto-sp13_S_contig14470.3442.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14470.3442.1
Unique NamemRNA_Ecto-sp13_S_contig14470.3442.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14470.3442.1 vs. uniprot
Match: A0A6H5L5L1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L1_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 5.460e-36
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 QGTPDDWVPRHPELVRLTGRHPFNVEPPVWRIKDHGFISPNELHYVRNHGAVPR 162
            +GTPDDWVPRHPELVRLTGRHPFNVEPPVWRIKDHGFISPNELHYVRNHGAVPR
Sbjct:   48 KGTPDDWVPRHPELVRLTGRHPFNVEPPVWRIKDHGFISPNELHYVRNHGAVPR 101
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14470.3442.1 vs. uniprot
Match: D8LQI2_ECTSI (NAD(P)H-Nitrate reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQI2_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 4.760e-32
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 QGTPDDWVPRHPELVRLTGRHPFNVEPPVWRIKDHGFISPNELHYVRNHGAVPR 162
            +GTPDDWVPRHPELVRLTGRHPFNVEPPVWRIKDHGFISPNELHYVRNHGAVPR
Sbjct:   48 KGTPDDWVPRHPELVRLTGRHPFNVEPPVWRIKDHGFISPNELHYVRNHGAVPR 101
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14470.3442.1 vs. uniprot
Match: A0A835YIE1_9STRA (Nitrate reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIE1_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.650e-26
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:    1 QGTPDDWVPRHPELVRLTGRHPFNVEPPVWRIKDHGFISPNELHYVRNHGAVPR 162
            QGTPDDWVPRHPELVRLTGRHPFNVEPPV R+ +HGFI+P  LHYVRNHGAVPR
Sbjct:   54 QGTPDDWVPRHPELVRLTGRHPFNVEPPVDRLYNHGFITPASLHYVRNHGAVPR 107
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14470.3442.1 vs. uniprot
Match: A0A7S4M227_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M227_9EUKA)

HSP 1 Score: 99.4 bits (246), Expect = 2.860e-25
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    4 GTPDDWVPRHPELVRLTGRHPFNVEPPVWRIKDHGFISPNELHYVRNHGAVPR 162
            GTPDDWVPRHP+LVRLTGRHPFNVEPP+  + + GFI+P  LHYVRNHGAVP+
Sbjct:   69 GTPDDWVPRHPDLVRLTGRHPFNVEPPLPALMEQGFITPASLHYVRNHGAVPK 121
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14470.3442.1 vs. uniprot
Match: A0A1Y1IM52_KLENI (Nitrate reductase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IM52_KLENI)

HSP 1 Score: 101 bits (251), Expect = 1.140e-23
Identity = 41/53 (77.36%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    4 GTPDDWVPRHPELVRLTGRHPFNVEPPVWRIKDHGFISPNELHYVRNHGAVPR 162
            GTPDDWV RHPELVRLTGRHPFN EPP+ R+++HGF++P  LHYVRNHGAVP+
Sbjct:   77 GTPDDWVARHPELVRLTGRHPFNCEPPLQRLREHGFMTPVSLHYVRNHGAVPK 129
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14470.3442.1 vs. uniprot
Match: A0A7S4HD63_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HD63_9EUKA)

HSP 1 Score: 99.4 bits (246), Expect = 3.490e-23
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    4 GTPDDWVPRHPELVRLTGRHPFNVEPPVWRIKDHGFISPNELHYVRNHGAVPR 162
            GTPDDWVPRHP+LVRLTGRHPFNVEPP+  + + GFI+P  LHYVRNHGAVP+
Sbjct:   35 GTPDDWVPRHPDLVRLTGRHPFNVEPPLPALMEQGFITPASLHYVRNHGAVPK 87
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14470.3442.1 vs. uniprot
Match: A0A7S3Y679_HETAK (Hypothetical protein (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=A0A7S3Y679_HETAK)

HSP 1 Score: 97.4 bits (241), Expect = 1.300e-22
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    7 TPDDWVPRHPELVRLTGRHPFNVEPPVWRIKDHGFISPNELHYVRNHGAVP 159
            TPDDW+PRHP+LVRLTGRHPFN EPPV  +  HGFI+P  LHYVRNHGA P
Sbjct:   29 TPDDWIPRHPDLVRLTGRHPFNCEPPVMDLMSHGFITPTSLHYVRNHGAAP 79
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14470.3442.1 vs. uniprot
Match: A0A7S0L9G1_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L9G1_9EUKA)

HSP 1 Score: 98.2 bits (243), Expect = 1.380e-22
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 QGTPDDWVPRHPELVRLTGRHPFNVEPPVWRIKDHGFISPNELHYVRNHGAVPR 162
            QGTPD+WVPRH  LVRLTGRHPFN EPP+ ++ +HGFI+P  LHYVRNHGAVP+
Sbjct:   19 QGTPDEWVPRHESLVRLTGRHPFNCEPPLPKLMEHGFITPASLHYVRNHGAVPK 72
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14470.3442.1 vs. uniprot
Match: G8IRI1_HETAK (NR2-2/2HbN n=7 Tax=Sar TaxID=2698737 RepID=G8IRI1_HETAK)

HSP 1 Score: 97.4 bits (241), Expect = 2.560e-22
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    7 TPDDWVPRHPELVRLTGRHPFNVEPPVWRIKDHGFISPNELHYVRNHGAVP 159
            TPDDW+PRHP+LVRLTGRHPFN EPPV  +  HGFI+P  LHYVRNHGA P
Sbjct:   29 TPDDWIPRHPDLVRLTGRHPFNCEPPVMDLMSHGFITPTSLHYVRNHGAAP 79
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14470.3442.1 vs. uniprot
Match: A0A7S2UZC5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZC5_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 6.060e-22
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    7 TPDDWVPRHPELVRLTGRHPFNVEPPVWRIKDHGFISPNELHYVRNHGAVPR 162
            TPDDW+PRHPEL+RLTGRHPFN EPP+  + +HGFI+P  LHYVRNHG  P+
Sbjct:   29 TPDDWIPRHPELIRLTGRHPFNCEPPLKELANHGFITPTSLHYVRNHGPPPK 80
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14470.3442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5L1_9PHAE5.460e-3698.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQI2_ECTSI4.760e-3298.15NAD(P)H-Nitrate reductase n=2 Tax=Ectocarpus TaxID... [more]
A0A835YIE1_9STRA1.650e-2687.04Nitrate reductase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A7S4M227_9EUKA2.860e-2577.36Hypothetical protein (Fragment) n=1 Tax=Prymnesium... [more]
A0A1Y1IM52_KLENI1.140e-2377.36Nitrate reductase n=1 Tax=Klebsormidium nitens Tax... [more]
A0A7S4HD63_9EUKA3.490e-2377.36Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S3Y679_HETAK1.300e-2276.47Hypothetical protein (Fragment) n=4 Tax=Eukaryota ... [more]
A0A7S0L9G1_9EUKA1.380e-2274.07Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
G8IRI1_HETAK2.560e-2276.47NR2-2/2HbN n=7 Tax=Sar TaxID=2698737 RepID=G8IRI1_... [more]
A0A7S2UZC5_9STRA6.060e-2271.15Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14470contigEcto-sp13_S_contig14470:3822..3983 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score125.2
Seed ortholog evalue9.5e-27
Seed eggNOG ortholog2880.D8LQI2
Preferred nameNIA1
Model size162
KEGG rclassRC00168,RC02812
KEGG koko:K00326,ko:K00387,ko:K10534
KEGG ReactionR00100,R00533,R00794,R00796
KEGG Pathwayko00520,ko00910,ko00920,ko01100,ko01120,map00520,map00910,map00920,map01100,map01120
KEGG ModuleM00531
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001505,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005829,GO:0005886,GO:0006082,GO:0006807,GO:0006809,GO:0008150,GO:0008152,GO:0008940,GO:0009058,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009608,GO:0009610,GO:0009620,GO:0009628,GO:0009703,GO:0009987,GO:0016020,GO:0016491,GO:0016661,GO:0017144,GO:0034641,GO:0042126,GO:0042128,GO:0042133,GO:0042136,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046209,GO:0046857,GO:0050896,GO:0051704,GO:0051707,GO:0055114,GO:0065007,GO:0065008,GO:0071704,GO:0071941,GO:0071944,GO:0072593,GO:1903409,GO:2001057
Exons1
EggNOG free text desc.heme binding
EggNOG OGsCOG0543@1,COG2041@1,COG5274@1,KOG0534@2759,KOG0535@2759,KOG0537@2759
EC1.6.2.2,1.7.1.1,1.7.1.2,1.7.1.3,1.8.3.1
Cds size162
COG Functional cat.C
BiGG ReactioniRC1080.CRv4_Au5_s9_g15693_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462772.5614107-CDS-Ecto-sp13_S_contig14470:3821..39831681462772.5614107-CDS-Ecto-sp13_S_contig14470:3821..3983Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14470 3822..3983 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14470.3442.1prot_Ecto-sp13_S_contig14470.3442.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14470 3822..3983 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14470.3442.1

>prot_Ecto-sp13_S_contig14470.3442.1 ID=prot_Ecto-sp13_S_contig14470.3442.1|Name=mRNA_Ecto-sp13_S_contig14470.3442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
QGTPDDWVPRHPELVRLTGRHPFNVEPPVWRIKDHGFISPNELHYVRNHG
AVPR
back to top

mRNA from alignment at Ecto-sp13_S_contig14470:3822..3983-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14470.3442.1 ID=mRNA_Ecto-sp13_S_contig14470.3442.1|Name=mRNA_Ecto-sp13_S_contig14470.3442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14470:3822..3983- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGTACCCCGGATGACTGGGTGCCTCGCCACCCGGAGCTGGTGCGGCT
CACCGGGCGGCACCCTTTCAACGTCGAGCCGCCGGTGTGGCGAATTAAGG
ACCACGGCTTCATCTCGCCGAACGAACTACACTACGTGCGAAATCATGGG
GCCGTACCACGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14470:3822..3983-

>mRNA_Ecto-sp13_S_contig14470.3442.1 ID=mRNA_Ecto-sp13_S_contig14470.3442.1|Name=mRNA_Ecto-sp13_S_contig14470.3442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14470:3822..3983- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGTACCCCGGATGACTGGGTGCCTCGCCACCCGGAGCTGGTGCGGCT
CACCGGGCGGCACCCTTTCAACGTCGAGCCGCCGGTGTGGCGAATTAAGG
ACCACGGCTTCATCTCGCCGAACGAACTACACTACGTGCGAAATCATGGG
GCCGTACCACGC
back to top