mRNA_Ecto-sp13_S_contig14467.3438.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14467.3438.1
Unique NamemRNA_Ecto-sp13_S_contig14467.3438.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14467.3438.1 vs. uniprot
Match: D8LLS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS3_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 5.070e-57
Identity = 97/107 (90.65%), Postives = 100/107 (93.46%), Query Frame = 1 
Query:    1 MFVAVDTLYTRNVRFNVRKGENMHFLAPALTFEREQGDTVEIFNLHGELHLRGDQHRFCDLVNTRTDDPHDTIHGSPDGDIITYGVSTLRFSETSVIVDAAPADTDT 321
            +FVAVDTLYTRNVRFNVRKGE MH  APALTFEREQGD+VEIFNLHGELHLRGDQHRF DLV+TRTDDPHDTIHGSPDGDIITYG S LRFSETSVIVDAAP DTDT
Sbjct:  288 LFVAVDTLYTRNVRFNVRKGETMHIRAPALTFEREQGDSVEIFNLHGELHLRGDQHRFDDLVDTRTDDPHDTIHGSPDGDIITYGGSMLRFSETSVIVDAAPTDTDT 394
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BLAST of mRNA_Ecto-sp13_S_contig14467.3438.1 vs. uniprot
Match: D8LLQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ3_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 6.950e-57
Identity = 96/112 (85.71%), Postives = 102/112 (91.07%), Query Frame = 1 
Query:    1 MFVAVDTLYTRNVRFNVRKGENMHFLAPALTFEREQGDTVEIFNLHGELHLRGDQHRFCDLVNTRTDDPHDTIHGSPDGDIITYGVSTLRFSETSVIVDAAPADTDTYDNGS 336
            +FVA +TLYT+N+RFNVRKGE M F APALTFEREQGDT EIFN+ GELHLRGDQHRF DLVNTRTDDPHDTI GSPDGDIITYGVSTLRFSETSVIVD AP DT+TYDNGS
Sbjct:  292 LFVAANTLYTKNLRFNVRKGEKMKFRAPALTFEREQGDTAEIFNVDGELHLRGDQHRFDDLVNTRTDDPHDTIRGSPDGDIITYGVSTLRFSETSVIVDVAPTDTNTYDNGS 403
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BLAST of mRNA_Ecto-sp13_S_contig14467.3438.1 vs. uniprot
Match: D8LLQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ5_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 6.090e-56
Identity = 95/109 (87.16%), Postives = 99/109 (90.83%), Query Frame = 1 
Query:    1 MFVAVDTLYTRNVRFNVRKGENMHFLAPALTFEREQGDTVEIFNLHGELHLRGDQHRFCDLVNTRTDDPHDTIHGSPDGDIITYGVSTLRFSETSVIVDAAPADTDTYD 327
            +FVA DTLYTRNVRFNVRKGE MH  APAL FEREQGD+VEIFNLHGELHLRGDQHRF DLV+TR DDPHDTIHGSPDGDIITYG S LRFSETSVIVDAAP DT+TYD
Sbjct:  290 LFVAADTLYTRNVRFNVRKGETMHIRAPALNFEREQGDSVEIFNLHGELHLRGDQHRFDDLVDTRMDDPHDTIHGSPDGDIITYGGSMLRFSETSVIVDAAPTDTNTYD 398
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BLAST of mRNA_Ecto-sp13_S_contig14467.3438.1 vs. uniprot
Match: A0A6H5L8D9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D9_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 3.230e-37
Identity = 80/126 (63.49%), Postives = 84/126 (66.67%), Query Frame = 1 
Query:    1 MFVAVDTLYTRNVRFNVRKGENMHFLAPALTFEREQGDTVEIFNLHGELHLRGDQHRFCDLVNTRTDDPHDTIHGSPDGDIITYGVSTLRFSETSVIVDAAPADTDTYDNGSDXXXXXXXXNFLGQ 378
            +FVAVD LYT+NVRF+VRKGE MH  APALTFEREQ                              DDPHDTIHGSPDGDIITYGVSTLRFSETSVIVDAAPADTDTYDNGSD        NF+GQ
Sbjct:  311 LFVAVDALYTKNVRFSVRKGEKMHIRAPALTFEREQ------------------------------DDPHDTIHGSPDGDIITYGVSTLRFSETSVIVDAAPADTDTYDNGSDNNN-----NFVGQ 401
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BLAST of mRNA_Ecto-sp13_S_contig14467.3438.1 vs. uniprot
Match: A0A6H5JIS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS5_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 5.680e-33
Identity = 66/91 (72.53%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:   67 MHFLAPALTFEREQGDTVEIFNLHGELHLRGDQHRFCDLVNTRTDDPHDTIHGSPDGDIITYGVSTLRFSETSVIVDAAPADTDTYDNGSD 339
            M FL   L+     GDT EIF + GELHLR DQHRF DLVNTRT+DPHDT  GSPDGDIIT+G S LRFSETSVIVDAA  DTDTYDNG D
Sbjct:    1 MSFLLALLSSLSPVGDTAEIFTVDGELHLRADQHRFDDLVNTRTNDPHDTSRGSPDGDIITHGGSMLRFSETSVIVDAAATDTDTYDNGID 91
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BLAST of mRNA_Ecto-sp13_S_contig14467.3438.1 vs. uniprot
Match: A0A6H5L4D7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4D7_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 8.370e-31
Identity = 58/75 (77.33%), Postives = 61/75 (81.33%), Query Frame = 1 
Query:   67 MHFLAPALTFEREQGDTVEIFNLHGELHLRGDQHRFCDLVNTRTDDPHDTIHGSPDGDIITYGVSTLRFSETSVI 291
            M FL   L+     GDT EIFN++GELHLRGDQHRF DLVNTRTDDPHDTI GSPDGDIITYG S LRFSETSVI
Sbjct:    1 MSFLLALLSSLSPVGDTAEIFNVNGELHLRGDQHRFDDLVNTRTDDPHDTIRGSPDGDIITYGGSMLRFSETSVI 75
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BLAST of mRNA_Ecto-sp13_S_contig14467.3438.1 vs. uniprot
Match: A0A6H5L206_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L206_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 3.380e-29
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 MFVAVDTLYTRNVRFNVRKGENMHFLAPALTFEREQGDTVEIFNLHGELHLRGDQHRFCDLVNTRT 198
            +FVA DTLYTRNVRF+VRKGE M F APALTFER+QGDT EIFN++GELHLRGDQHRF DLVNTRT
Sbjct:  300 LFVATDTLYTRNVRFSVRKGEKMKFRAPALTFERDQGDTAEIFNVNGELHLRGDQHRFDDLVNTRT 365
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BLAST of mRNA_Ecto-sp13_S_contig14467.3438.1 vs. uniprot
Match: A0A6H5JJ01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ01_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 7.310e-8
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 MFVAVDTLYTRNVRFNVRKGENMHFLAPALTFEREQGDTVEIFNL 135
            +FVA +TLYT+N RFNVRKGE + F APALTFER+Q      F L
Sbjct:  150 LFVAANTLYTKNDRFNVRKGEKIKFRAPALTFERDQVAVERCFGL 194
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14467.3438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LLS3_ECTSI5.070e-5790.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLQ3_ECTSI6.950e-5785.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLQ5_ECTSI6.090e-5687.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8D9_9PHAE3.230e-3763.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIS5_9PHAE5.680e-3372.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4D7_9PHAE8.370e-3177.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L206_9PHAE3.380e-2983.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ01_9PHAE7.310e-862.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14467contigEcto-sp13_S_contig14467:2093..3527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size379
Hectar predicted targeting categoryother localisation
Exons3
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462772.1938822-CDS-Ecto-sp13_S_contig14467:2092..22001681462772.1938822-CDS-Ecto-sp13_S_contig14467:2092..2200Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14467 2093..2200 +
1681462772.2027898-CDS-Ecto-sp13_S_contig14467:2673..27631681462772.2027898-CDS-Ecto-sp13_S_contig14467:2673..2763Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14467 2674..2763 +
1681462772.210937-CDS-Ecto-sp13_S_contig14467:3347..35271681462772.210937-CDS-Ecto-sp13_S_contig14467:3347..3527Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14467 3348..3527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14467.3438.1prot_Ecto-sp13_S_contig14467.3438.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14467 2093..3527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14467.3438.1

>prot_Ecto-sp13_S_contig14467.3438.1 ID=prot_Ecto-sp13_S_contig14467.3438.1|Name=mRNA_Ecto-sp13_S_contig14467.3438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
MFVAVDTLYTRNVRFNVRKGENMHFLAPALTFEREQGDTVEIFNLHGELH
LRGDQHRFCDLVNTRTDDPHDTIHGSPDGDIITYGVSTLRFSETSVIVDA
APADTDTYDNGSDNNNNNNHNNFLGQ
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mRNA from alignment at Ecto-sp13_S_contig14467:2093..3527+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14467.3438.1 ID=mRNA_Ecto-sp13_S_contig14467.3438.1|Name=mRNA_Ecto-sp13_S_contig14467.3438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14467:2093..3527+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGTCGCGGTTGACACCCTGTACACCAGGAACGTCCGCTTCAACGT
CCGGAAGGGCGAAAATATGCACTTCCTGGCCCCGGCTCTCACTTTCGAGA
GGGAACAGGTATTGTAGCTGTTGAGCGCTGTTTTCGTCTGGCATATCTCC
CTATACTTCTAAAGCGGGTGTGGCACGTATTCCTTTGAGGTCAGACGTCA
CCCCTGACGTCCGTTCGGTTTTTCTGTCTGTGCTCGAGAGGCCCTCCTTC
CCTTTTTATTCCTAACTTTGTCGATGTCGAGGTGAGGCGATTACCTCGCC
CCCACGACTTTTTCTTGCAATGTACACACGTCTCGTGAAATTGTCATATG
TTCCCAAGGACATTGTACTGTTGTGTTATCTTTTTGTACAGGAGATGTAT
AACCTACTTTCCGTCACTCGCGAAGTCCATCCATTTCGCAAAGATTTTTC
TTGCTTGCCCTGCTCTTCTCCCTCTCACCGCATTCCTCCCCCTCTTTCCC
CTTATACCTATTTTTTCCAACGCCCTTTGCTTTCCCCTTGTCCAACCTCA
TCTGTGATTATCGCTGTGTTAATTTGTTCAGGGTGATACGGTTGAGATCT
TCAACTTGCACGGCGAGTTGCACCTCCGCGGCGACCAACACCGCTTCTGC
GATCTGGTCAACACGAGGACGGTGAGCTCTTCTTAGCTGTCCTTGTTGTT
GTTGTTGTTGTTGTTGTTGTCGGCGGCGCTTTGTTAGCGACCCCATTGCT
ACATGTCTCGTTGGCAGGACAGACTTGGCCTAGTCTCTATCTGAACACCT
GCCTCCACGATCTTTTGAGACCAACCTAACGTGTGCCAGCAGTGCTGCTT
GTTTAGTTCCTTTTAACCAGGAATGCTCCTGGTTTCCCAGGAGCCGCATT
ATCAATGCATTTATTTGGACCTGACAACGCCCAAGCACCAACTCCGTTGC
GACTCAAGGGTGTACATTCCCACCGCTCCAACACACACCCTAGCAGCTCA
ACACATGCGTACGCCTTGGCACGCTGGTCTTCTCCGCTCACGCGTGGAAT
AGTCATGTTCAGTCCACTTCAGTTCGGCTCCCGCCATCACACGTTCCGCA
ACCTATCCCTCACACACACACTGAACACTGTCCTCTGATTGCAATCGCCC
CAAGGCCTAACCTCCCCCCCCCCCCCGGCCCTCCCCTTCCCACCCCTTCT
GCCGTCGTGCCTACGCGCTGTTGGCCATGTTGTAACGCTTTCTCCACCAC
CCTAGGACGACCCACACGATACGATCCACGGTTCCCCCGATGGCGATATC
ATCACCTACGGCGTTTCGACGCTACGCTTCAGCGAGACCTCCGTCATCGT
CGATGCTGCCCCCGCCGACACCGACACCTACGACAACGGTAGCGATAACA
ACAACAACAACAACCACAACAACTTCCTCGGGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14467:2093..3527+

>mRNA_Ecto-sp13_S_contig14467.3438.1 ID=mRNA_Ecto-sp13_S_contig14467.3438.1|Name=mRNA_Ecto-sp13_S_contig14467.3438.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14467:2093..3527+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGTCGCGGTTGACACCCTGTACACCAGGAACGTCCGCTTCAACGT
CCGGAAGGGCGAAAATATGCACTTCCTGGCCCCGGCTCTCACTTTCGAGA
GGGAACAGGGTGATACGGTTGAGATCTTCAACTTGCACGGCGAGTTGCAC
CTCCGCGGCGACCAACACCGCTTCTGCGATCTGGTCAACACGAGGACGGA
CGACCCACACGATACGATCCACGGTTCCCCCGATGGCGATATCATCACCT
ACGGCGTTTCGACGCTACGCTTCAGCGAGACCTCCGTCATCGTCGATGCT
GCCCCCGCCGACACCGACACCTACGACAACGGTAGCGATAACAACAACAA
CAACAACCACAACAACTTCCTCGGGCAG
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