mRNA_Ecto-sp13_S_contig14465.3437.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14465.3437.1
Unique NamemRNA_Ecto-sp13_S_contig14465.3437.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14465.3437.1 vs. uniprot
Match: D7FZU1_ECTSI (Na+-bile acid cotransporter (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU1_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 8.750e-25
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 1
Query:   31 TTKKQVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWRTGD 189
            TT  +VGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWRTGD
Sbjct:   13 TTSIEVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWRTGD 65          
BLAST of mRNA_Ecto-sp13_S_contig14465.3437.1 vs. uniprot
Match: A0A6H5KM36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM36_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 2.240e-22
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 1
Query:   31 TTKKQVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWRTGDR 192
            TT  +VGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAA+WRTGDR
Sbjct:  397 TTSIEVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAYWRTGDR 450          
BLAST of mRNA_Ecto-sp13_S_contig14465.3437.1 vs. uniprot
Match: L1JAR9_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JAR9_GUITC)

HSP 1 Score: 71.2 bits (173), Expect = 4.880e-13
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1
Query:   31 TTKKQVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWRTGDR 192
            T   + GMQNSAL VVLA R  ADPL+A+P A+SATCHS++GS+ AA+WR G R
Sbjct:  249 TVSIETGMQNSALGVVLATRNFADPLTALPCAISATCHSVLGSSFAAYWRLGGR 302          
BLAST of mRNA_Ecto-sp13_S_contig14465.3437.1 vs. uniprot
Match: A0A7S2PII3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PII3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.300e-12
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 1
Query:   31 TTKKQVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWRTGD 189
            T   + GMQNSALAVVLA+   ADPLS +PGA+SAT HS+IGS LAAFWR  D
Sbjct:   59 TVSIETGMQNSALAVVLAKSIGADPLSYLPGALSATAHSVIGSGLAAFWRLMD 111          
BLAST of mRNA_Ecto-sp13_S_contig14465.3437.1 vs. uniprot
Match: A0A835YU74_9STRA (Bile acid:sodium symporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU74_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.180e-12
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:   31 TTKKQVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWR 180
            T   +VGMQNSALAVVLA+    DPL+A+PGA+SAT HS++GS LAAFWR
Sbjct:  267 TVSIEVGMQNSALAVVLARSAFPDPLTALPGAISATVHSVLGSCLAAFWR 316          
BLAST of mRNA_Ecto-sp13_S_contig14465.3437.1 vs. uniprot
Match: A0A7S4MZT7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MZT7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.620e-12
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 1
Query:   31 TTKKQVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWRTGD 189
            T   + GMQNSALAVVLA+   ADPL+++PGA+SATCHS +GS LAA+WR  D
Sbjct:  210 TVSIETGMQNSALAVVLARSIGADPLASLPGALSATCHSCLGSVLAAYWRFAD 262          
BLAST of mRNA_Ecto-sp13_S_contig14465.3437.1 vs. uniprot
Match: A0A7S4MZJ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MZJ7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 7.630e-12
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 1
Query:   31 TTKKQVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWRTGD 189
            T   + GMQNSALAVVLA+   ADPL+++PGA+SATCHS +GS LAA+WR  D
Sbjct:  451 TVSIETGMQNSALAVVLARSIGADPLASLPGALSATCHSCLGSVLAAYWRFAD 503          
BLAST of mRNA_Ecto-sp13_S_contig14465.3437.1 vs. uniprot
Match: A0A2D4YWT0_9SYNE (Sodium dependent transporter n=1 Tax=Synechococcus sp. CPC35 TaxID=2024880 RepID=A0A2D4YWT0_9SYNE)

HSP 1 Score: 67.4 bits (163), Expect = 1.030e-11
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    1 LSSRNAYVRPTTKKQVGMQNSALAVVLAQRG-LADPLSAIPGAVSATCHSLIGSALAAFWRT 183
            L+   A V  T   +VGMQNS LAVVLA+ G  A PL+A+PGAVSA  H LIGSALAAFWR+
Sbjct:  242 LAGERASVCRTISIEVGMQNSGLAVVLARSGGFASPLTALPGAVSAVIHCLIGSALAAFWRS 303          
BLAST of mRNA_Ecto-sp13_S_contig14465.3437.1 vs. uniprot
Match: A0A5J6Q3J5_9SYNE (Bile acid:sodium symporter family protein n=2 Tax=Synechococcus sp. RSCCF101 TaxID=2511069 RepID=A0A5J6Q3J5_9SYNE)

HSP 1 Score: 66.2 bits (160), Expect = 2.830e-11
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   22 VRPTTKKQVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWRTG 186
            VR T   +VGMQNS LAVVLA+    DPL+A+PGA+SA  H+L+G+ LAA WR G
Sbjct:  251 VRRTVSIEVGMQNSGLAVVLARAAFPDPLTALPGAISAVIHALLGACLAAIWRGG 305          
BLAST of mRNA_Ecto-sp13_S_contig14465.3437.1 vs. uniprot
Match: A0A7S2Y1N2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1N2_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.560e-11
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:   31 TTKKQVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWR 180
            T   +VGMQNSALA VLA +  +DP+ A+PGAVSATCHS++GS LA  WR
Sbjct:  364 TVSIEVGMQNSALAAVLAAKAFSDPMIALPGAVSATCHSIMGSFLATLWR 413          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14465.3437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZU1_ECTSI8.750e-2594.34Na+-bile acid cotransporter (ISS) n=1 Tax=Ectocarp... [more]
A0A6H5KM36_9PHAE2.240e-2292.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
L1JAR9_GUITC4.880e-1362.96Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S2PII3_9STRA1.300e-1267.92Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A835YU74_9STRA3.180e-1268.00Bile acid:sodium symporter n=1 Tax=Tribonema minus... [more]
A0A7S4MZT7_9STRA4.620e-1264.15Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S4MZJ7_9STRA7.630e-1264.15Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A2D4YWT0_9SYNE1.030e-1162.90Sodium dependent transporter n=1 Tax=Synechococcus... [more]
A0A5J6Q3J5_9SYNE2.830e-1160.00Bile acid:sodium symporter family protein n=2 Tax=... [more]
A0A7S2Y1N2_9STRA3.560e-1164.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14465contigEcto-sp13_S_contig14465:4162..4353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score97.8
Seed ortholog evalue1.9e-18
Seed eggNOG ortholog2880.D7FZU1
Model size192
KEGG koko:K03453
KEGG TC2.A.28
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Exons1
EggNOG free text desc.bile acid:sodium symporter activity
EggNOG OGsCOG0385@1,KOG2718@2759
Cds size192
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462772.1623166-CDS-Ecto-sp13_S_contig14465:4161..43531681462772.1623166-CDS-Ecto-sp13_S_contig14465:4161..4353Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14465 4162..4353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14465.3437.1prot_Ecto-sp13_S_contig14465.3437.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14465 4162..4353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14465.3437.1

>prot_Ecto-sp13_S_contig14465.3437.1 ID=prot_Ecto-sp13_S_contig14465.3437.1|Name=mRNA_Ecto-sp13_S_contig14465.3437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
LSSRNAYVRPTTKKQVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSL
IGSALAAFWRTGDR
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mRNA from alignment at Ecto-sp13_S_contig14465:4162..4353-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14465.3437.1 ID=mRNA_Ecto-sp13_S_contig14465.3437.1|Name=mRNA_Ecto-sp13_S_contig14465.3437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14465:4162..4353- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTCCTCCCGGAATGCATACGTACGTCCAACAACAAAAAAACAGGTTGG CATGCAGAATTCTGCGCTGGCGGTCGTCCTGGCGCAGAGGGGCCTCGCAG ACCCCTTGTCGGCGATCCCGGGAGCGGTCTCGGCGACGTGCCATTCCCTC ATTGGCAGCGCCCTGGCAGCCTTCTGGCGCACCGGGGATAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14465:4162..4353-

>mRNA_Ecto-sp13_S_contig14465.3437.1 ID=mRNA_Ecto-sp13_S_contig14465.3437.1|Name=mRNA_Ecto-sp13_S_contig14465.3437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14465:4162..4353- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTCCTCCCGGAATGCATACGTACGTCCAACAACAAAAAAACAGGTTGG
CATGCAGAATTCTGCGCTGGCGGTCGTCCTGGCGCAGAGGGGCCTCGCAG
ACCCCTTGTCGGCGATCCCGGGAGCGGTCTCGGCGACGTGCCATTCCCTC
ATTGGCAGCGCCCTGGCAGCCTTCTGGCGCACCGGGGATAGA
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