mRNA_Ecto-sp13_S_contig14465.3437.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14465.3437.1 vs. uniprot
Match: D7FZU1_ECTSI (Na+-bile acid cotransporter (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU1_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 8.750e-25 Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 1
Query: 31 TTKKQVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWRTGD 189
TT +VGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWRTGD
Sbjct: 13 TTSIEVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWRTGD 65
BLAST of mRNA_Ecto-sp13_S_contig14465.3437.1 vs. uniprot
Match: A0A6H5KM36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM36_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 2.240e-22 Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 1
Query: 31 TTKKQVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWRTGDR 192
TT +VGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAA+WRTGDR
Sbjct: 397 TTSIEVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAYWRTGDR 450
BLAST of mRNA_Ecto-sp13_S_contig14465.3437.1 vs. uniprot
Match: L1JAR9_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JAR9_GUITC) HSP 1 Score: 71.2 bits (173), Expect = 4.880e-13 Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1
Query: 31 TTKKQVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWRTGDR 192
T + GMQNSAL VVLA R ADPL+A+P A+SATCHS++GS+ AA+WR G R
Sbjct: 249 TVSIETGMQNSALGVVLATRNFADPLTALPCAISATCHSVLGSSFAAYWRLGGR 302
BLAST of mRNA_Ecto-sp13_S_contig14465.3437.1 vs. uniprot
Match: A0A7S2PII3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PII3_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 1.300e-12 Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 1
Query: 31 TTKKQVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWRTGD 189
T + GMQNSALAVVLA+ ADPLS +PGA+SAT HS+IGS LAAFWR D
Sbjct: 59 TVSIETGMQNSALAVVLAKSIGADPLSYLPGALSATAHSVIGSGLAAFWRLMD 111
BLAST of mRNA_Ecto-sp13_S_contig14465.3437.1 vs. uniprot
Match: A0A835YU74_9STRA (Bile acid:sodium symporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU74_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 3.180e-12 Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query: 31 TTKKQVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWR 180
T +VGMQNSALAVVLA+ DPL+A+PGA+SAT HS++GS LAAFWR
Sbjct: 267 TVSIEVGMQNSALAVVLARSAFPDPLTALPGAISATVHSVLGSCLAAFWR 316
BLAST of mRNA_Ecto-sp13_S_contig14465.3437.1 vs. uniprot
Match: A0A7S4MZT7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MZT7_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 4.620e-12 Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 1
Query: 31 TTKKQVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWRTGD 189
T + GMQNSALAVVLA+ ADPL+++PGA+SATCHS +GS LAA+WR D
Sbjct: 210 TVSIETGMQNSALAVVLARSIGADPLASLPGALSATCHSCLGSVLAAYWRFAD 262
BLAST of mRNA_Ecto-sp13_S_contig14465.3437.1 vs. uniprot
Match: A0A7S4MZJ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MZJ7_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 7.630e-12 Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 1
Query: 31 TTKKQVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWRTGD 189
T + GMQNSALAVVLA+ ADPL+++PGA+SATCHS +GS LAA+WR D
Sbjct: 451 TVSIETGMQNSALAVVLARSIGADPLASLPGALSATCHSCLGSVLAAYWRFAD 503
BLAST of mRNA_Ecto-sp13_S_contig14465.3437.1 vs. uniprot
Match: A0A2D4YWT0_9SYNE (Sodium dependent transporter n=1 Tax=Synechococcus sp. CPC35 TaxID=2024880 RepID=A0A2D4YWT0_9SYNE) HSP 1 Score: 67.4 bits (163), Expect = 1.030e-11 Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 1
Query: 1 LSSRNAYVRPTTKKQVGMQNSALAVVLAQRG-LADPLSAIPGAVSATCHSLIGSALAAFWRT 183
L+ A V T +VGMQNS LAVVLA+ G A PL+A+PGAVSA H LIGSALAAFWR+
Sbjct: 242 LAGERASVCRTISIEVGMQNSGLAVVLARSGGFASPLTALPGAVSAVIHCLIGSALAAFWRS 303
BLAST of mRNA_Ecto-sp13_S_contig14465.3437.1 vs. uniprot
Match: A0A5J6Q3J5_9SYNE (Bile acid:sodium symporter family protein n=2 Tax=Synechococcus sp. RSCCF101 TaxID=2511069 RepID=A0A5J6Q3J5_9SYNE) HSP 1 Score: 66.2 bits (160), Expect = 2.830e-11 Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 1
Query: 22 VRPTTKKQVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWRTG 186
VR T +VGMQNS LAVVLA+ DPL+A+PGA+SA H+L+G+ LAA WR G
Sbjct: 251 VRRTVSIEVGMQNSGLAVVLARAAFPDPLTALPGAISAVIHALLGACLAAIWRGG 305
BLAST of mRNA_Ecto-sp13_S_contig14465.3437.1 vs. uniprot
Match: A0A7S2Y1N2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1N2_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 3.560e-11 Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query: 31 TTKKQVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLIGSALAAFWR 180
T +VGMQNSALA VLA + +DP+ A+PGAVSATCHS++GS LA WR
Sbjct: 364 TVSIEVGMQNSALAAVLAAKAFSDPMIALPGAVSATCHSIMGSFLATLWR 413 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14465.3437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14465.3437.1 >prot_Ecto-sp13_S_contig14465.3437.1 ID=prot_Ecto-sp13_S_contig14465.3437.1|Name=mRNA_Ecto-sp13_S_contig14465.3437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp LSSRNAYVRPTTKKQVGMQNSALAVVLAQRGLADPLSAIPGAVSATCHSLback to top mRNA from alignment at Ecto-sp13_S_contig14465:4162..4353- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14465.3437.1 ID=mRNA_Ecto-sp13_S_contig14465.3437.1|Name=mRNA_Ecto-sp13_S_contig14465.3437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14465:4162..4353- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14465:4162..4353- >mRNA_Ecto-sp13_S_contig14465.3437.1 ID=mRNA_Ecto-sp13_S_contig14465.3437.1|Name=mRNA_Ecto-sp13_S_contig14465.3437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14465:4162..4353- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |