mRNA_Ecto-sp13_S_contig14406.3388.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14406.3388.1 vs. uniprot
Match: D7G2Q4_ECTSI (Fatty acid hydroxylase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2Q4_ECTSI) HSP 1 Score: 563 bits (1451), Expect = 5.940e-202 Identity = 296/308 (96.10%), Postives = 300/308 (97.40%), Query Frame = 1
Query: 1 MSWFPKPPLLDGLLADVLVRGAGGGAAFSLVNAADTWQWWHYPAWLSVILLGLEFVAAMVHVFGRASKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGASELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFLYEVRYHDIHHWYPECNYGQYIMLWDWLMGSLKPYPADEDRGERKKNLGGDVTPPANGASSDSTAAENKEKAG 924
MSWFP PLLDGLLADVLV+GAGGG AFSLVNAADTWQWWHYPAWLSVILLGLEFVAAMVHVFGRASKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWG SELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFLYEVRYHDIHHWYPECNYGQY MLWDW+MGSLK YPA+EDRGERK+NLGG VTPPANGA SDSTAAENKEKAG
Sbjct: 1 MSWFPTLPLLDGLLADVLVKGAGGGVAFSLVNAADTWQWWHYPAWLSVILLGLEFVAAMVHVFGRASKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGVSELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFLYEVRYHDIHHWYPECNYGQYTMLWDWVMGSLKAYPAEEDRGERKRNLGGGVTPPANGARSDSTAAENKEKAG 308
BLAST of mRNA_Ecto-sp13_S_contig14406.3388.1 vs. uniprot
Match: A0A4D9CVT2_9STRA (Fatty acid hydroxylase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CVT2_9STRA) HSP 1 Score: 257 bits (656), Expect = 2.330e-81 Identity = 134/276 (48.55%), Postives = 176/276 (63.77%), Query Frame = 1
Query: 46 DVLVRGAGGGAAFSLVNAADTWQWWHYPAWLSVILLGLEFVAAMVHVFGRASKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGASELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIP----FLYEVRYHDIHHWYPECNYGQYIMLWDWLMGSLKPYP------ADEDRGERKK 843
D+ +RGAGGGA F L NA TW H+ AW ++L GLE +A +V FGR + +I RGKHLD D F+AFN+ +T +F+YH +++LW + +VAW E+ + AL +VVYD RQKAP+RGN DAVNVHP+EF+ GEYNHL A++LVSR+++PVH ++A AFIV GGF ASLNHTRFDI+ P +Y+VR+HD+HHW+PE NYGQY+MLWD++ GS KPYP + RG RKK
Sbjct: 19 DLFLRGAGGGA-FLLWNA-HTWLSHHFIAWGLLVLAGLEILACLVFAFGRLRRVPSIPMRGKHLDTLDTRDLGFIAFNKLATTLFSYHLLRFLWLSKGPAQVAWRVEEMTWQNTCLALPLLFVVYDFAYTLFHRALHHRALYKHIHKHHHRQKAPSRGNTDAVNVHPVEFVAGEYNHLAAIYLVSRFLLPVHALTALAFIVLGGFLASLNHTRFDIQTPGVLSSVYQVRFHDVHHWFPESNYGQYLMLWDYVFGSFKPYPEVKGAASGGGRGGRKK 292
BLAST of mRNA_Ecto-sp13_S_contig14406.3388.1 vs. uniprot
Match: A0A7S2TQE1_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TQE1_9EUKA) HSP 1 Score: 217 bits (553), Expect = 4.390e-66 Identity = 122/261 (46.74%), Postives = 162/261 (62.07%), Query Frame = 1
Query: 52 LVRGAGGGAAFSLVNA----ADTWQWWHYPAWLSVILLGLEFVAAMVHVFGRASKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGASELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFLYEVRYHDIHHWYPECNYGQYIMLWDWLMGSLKPYPADE 822
+V G+ + L++A A TW+WWH+ + VI LGLE + +V S A I RGKHLDEF +D F+ FN+ + VFTYH +++ + A + W +LG+ +G +LVA ++VYD F X XXXXXXX RQ+APTRGN DA+NVHP EF+ GEY HL+A LVSR V+ +HV + F+ GG ASLNHTR+D+ +Y V+ HD+HH PE NYGQYIMLWD LMGS KPY ++
Sbjct: 13 IVCGSRRSSTMMLMSAELHDASTWEWWHFAGFALVIYLGLELLNVLV--INAFSSANQIPIRGKHLDEFEFIDNAFIQFNKLAIIVFTYHMIRFTFTAK---NICWDIRDLGILNGPSSLVAMHIVYDFFYTLFHRFLXNRXXXXXXXKHHHRQRAPTRGNLDAINVHPFEFVVGEYIHLVAAFLVSR-VMTIHVGAIAWFVAVGGLLASLNHTRYDLSFLGVYSVKVHDVHHRLPESNYGQYIMLWDKLMGSYKPYTTEK 267
BLAST of mRNA_Ecto-sp13_S_contig14406.3388.1 vs. uniprot
Match: A0A7S4IH56_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IH56_9EUKA) HSP 1 Score: 213 bits (543), Expect = 8.310e-65 Identity = 106/248 (42.74%), Postives = 150/248 (60.48%), Query Frame = 1
Query: 73 GAAFSLVNAADTWQWWHYPAWLSVILLGLEFVAAMVHVFGRASKAATIRP-RGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGASELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFLYEVRYHDIHHWYPECNYGQYIMLWDWLMGSLKPYP 813
GA ++ + W+W+ AW+ I+ LE ++ +V + A ++ P +GK LDE +D ++ FNR T VFT+ +Q+ WY+ +V W LG+ + LGA+VA ++VYD F RQ PTRGN DA+NVHP+EF+ GEYNHLL ++LVSR V+ +HV+S F++ G ASLNHTRFDI++ L++V+YHDIHHWYP N+GQY MLWD + G K YP
Sbjct: 11 GAVAFIMFESQYWEWYQICAWVVGIIAALEILSRVVMI---AQPFFSVIPAKGKPLDELATIDLCYIWFNRLCTPVFTFQVIQFCWYSS---QVVWALDSLGILNTLGAMVAMFIVYDFFYAIYHRSLHIRGIYKYIHKHHHRQTVPTRGNVDAINVHPVEFVMGEYNHLLVMYLVSR-VIEIHVLSVLLFLLIGATLASLNHTRFDIQVSKLFQVKYHDIHHWYPYANFGQYTMLWDHVFGWFKDYP 251
BLAST of mRNA_Ecto-sp13_S_contig14406.3388.1 vs. uniprot
Match: A0A7S1U5D6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5D6_9STRA) HSP 1 Score: 209 bits (531), Expect = 4.030e-63 Identity = 111/247 (44.94%), Postives = 147/247 (59.51%), Query Frame = 1
Query: 70 GGAAFSLVNAADTWQWWHYPAWLSVILLGLEFVAAMVHVFGRASKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGASELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFLYEVRYHDIHHWYPECNYGQYIMLWDWLMGSLKPY 810
G AA L+ A +TW W + V+L GLE V+ V S A I +GKH D+ T D+ F+AFN+ + VFT+H + Y+W P +V W + + A YVVYD F QKAP+RGN DAVNVHP EF+ GEYNH+LAL +++ ++ VHV++AG FI+AGG ASLNHTR+D+ IP +Y+V+YHD+HH P+ NYGQYIMLWD LMGS + Y
Sbjct: 8 GAAAVELMEA-ETWSWPVRIGYTVVVLGGLELVSRFV--LTAFSGAEKIPIKGKHHDKLTTKDKCFIAFNKATVVVFTWHMLSYIWQNP---KVVWALEDATALNTAAAAALLYVVYDFFYTLFHRFLHVKAIYGYVHKHHHIQKAPSRGNVDAVNVHPFEFVCGEYNHILALFILTTFM-EVHVLAAGLFILAGGALASLNHTRYDVSIPGIYDVKYHDVHHRIPQSNYGQYIMLWDHLMGSFREY 247
BLAST of mRNA_Ecto-sp13_S_contig14406.3388.1 vs. uniprot
Match: A0A061SG51_9CHLO (C-5 sterol desaturase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SG51_9CHLO) HSP 1 Score: 210 bits (534), Expect = 4.980e-63 Identity = 117/272 (43.01%), Postives = 153/272 (56.25%), Query Frame = 1
Query: 70 GGAAFSLVNAADTW---------QWWHYPAWLSVILLGLEFVAAMVHVFGRA-------SKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGASELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIR---IPFLYEVRYHDIHHWYPECNYGQYIMLWDWLMGSLKPYPADEDR 828
GG F V++A + +WW Y + ++L +E ++A V G I RG+HLD D +F+AFNR +T VFT+HA+Q+LW +P RV WGA + AS L AL A +VVYD RQ AP+RGN DAVNVHP EFL GEYNHL A+ VSR VPVH +A FIV+GG ASLNHTR DI +P+L++V+YHD+HHW P N+GQY M+WD++ S + YP + R
Sbjct: 9 GGFLFKAVSSAIFFADKLFSLGGEWWMYALFGLAVVLAMELLSASVPRIGSVILTLQGRRNTGLIPARGRHLDALEATDYVFIAFNRLTTPVFTFHAMQFLWQSP---RVVWGARDATAASVLLALAAMFVVYDSTYCLFHRALHHRSVYKHVHKHHHRQMAPSRGNVDAVNVHPFEFLPGEYNHLFAIWAVSR-AVPVHAGAALLFIVSGGVLASLNHTRLDIASPVLPWLFKVKYHDVHHWDPSVNFGQYTMIWDYVFRSFRAYPGEGGR 276
BLAST of mRNA_Ecto-sp13_S_contig14406.3388.1 vs. uniprot
Match: A0A7S0GVS8_9EUKA (Hypothetical protein n=2 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GVS8_9EUKA) HSP 1 Score: 208 bits (530), Expect = 1.050e-62 Identity = 106/241 (43.98%), Postives = 146/241 (60.58%), Query Frame = 1
Query: 88 LVNAADTWQWWHYPAWLSVILLGLEFVAAMVHVFGRASKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGASELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFLYEVRYHDIHHWYPECNYGQYIMLWDWLMGSLKPY 810
+++ TWQ WH+ + VI LG+E ++ +V + + +K I RGKHLD F +D +++ N+ +TAVF YH ++Y+ A V W L + + ++V ++VYD F RQ+APTRGN DA+NVHP EF+ GEY HLLA HLV++Y+V VH+V+ F+V GG ASLNHTRFD +Y V+ HD+HH PE NYGQYIMLWD +MGS KPY
Sbjct: 26 VIHQPGTWQVWHFGVFSVVIYLGMEILSHIVPLVFQ-NKTNLIPMRGKHLDVFETVDHVYININKIATAVFVYHMLKYVNAA----NVEWDIGGLSVVNFPVSVVLMHIVYDFFYTIFHRVLHNRQLYRFVHKHHHRQRAPTRGNLDAINVHPFEFVVGEYLHLLAAHLVTKYLVKVHIVAIAWFVVVGGILASLNHTRFDFSFLGIYSVKVHDVHHRLPESNYGQYIMLWDKIMGSYKPY 261
BLAST of mRNA_Ecto-sp13_S_contig14406.3388.1 vs. uniprot
Match: A0A7S1SIK8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SIK8_9CHLO) HSP 1 Score: 202 bits (514), Expect = 5.470e-60 Identity = 133/244 (54.51%), Postives = 169/244 (69.26%), Query Frame = 1
Query: 118 WHYPAWLSVILLGLEFVAAMVHVFGRASKAAT-------IRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGASELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFL---YEVRYHDIHHWYPECNYGQYIMLWDWLMGSLKPYPAD 819
W Y + ++++ +E +AA+V + G + A I RGKHLD F D F+AFNR +T +FT+HA+QYLW +P R A A+ L A+ AL+A +VVYDL XXXXXXXXXXXXXXXXXXXXXXRQ AP+RGN DAVNVHP E+L GEYNHL A+ +VSR ++P+H +A FIV+GG ASLNHTR DI+ P L Y+V+YHDIHHW P N+GQY MLWD + S + YP +
Sbjct: 31 WMYTVFAALVMAAMELLAALVPLIGTLTLAIQGRKGSPGIAVRGKHLDAFGATDYAFMAFNRLTTPLFTFHALQYLWLSPHILRSARDATALSTAA---ALLALFVVYDLTXXXXXXXXXXXXXXXXXXXXXXRQMAPSRGNTDAVNVHPFEYLPGEYNHLFAIWVVSR-LMPLHAATALFFIVSGGVLASLNHTRLDIKSPLLTTVYQVKYHDIHHWDPSVNFGQYTMLWDHVFRSFRAYPGE 270
BLAST of mRNA_Ecto-sp13_S_contig14406.3388.1 vs. uniprot
Match: A0A7S0W795_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W795_9CRYP) HSP 1 Score: 200 bits (508), Expect = 2.260e-59 Identity = 113/253 (44.66%), Postives = 155/253 (61.26%), Query Frame = 1
Query: 76 AAFSLVNAADTWQWWHYPAWLSVILLGLEFVAAMVHVFGRASKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGASELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFLYEVRYHDIHHWYPECNYGQYIMLWDWLMGSLKPYPADEDRGE 834
AAF +A+ TW Y +W +VI+LGLE VA +V + + RG HLD T D F+ +N+ TAVFTYHA+++ WY+ V WG EL L + + AL +VVYD F XXXXXX Q AP+RG ADAVNVHP EF+ GEY HLLA+ ++VP H+++A F+V GG ASLNHTRF++ + +++V++HD HH P NYGQYIMLWD++ G+ YP ++ +G+
Sbjct: 27 AAFKFWDAS-TWTPLQYLSWCTVIVLGLEIVAWLVSNIPKLFNTVILPKRGSHLDVLTSKDIAFICWNKFCTAVFTYHALRFCWYSK---TVKWGLDELTLLNTVVALGGLFVVYDFFYHIFHRALHLRSVYKYXXXXXXNQHAPSRGTADAVNVHPFEFVCGEYCHLLAI-----FLVPCHIMTAALFVVGGGVVASLNHTRFNVSLLNVFDVKFHDQHHVVPTVNYGQYIMLWDYVFGTYHEYPHEKLKGQ 270
BLAST of mRNA_Ecto-sp13_S_contig14406.3388.1 vs. uniprot
Match: A0A482SFA9_9ARCH (Fatty acid hydroxylase family protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SFA9_9ARCH) HSP 1 Score: 195 bits (495), Expect = 1.960e-57 Identity = 99/228 (43.42%), Postives = 136/228 (59.65%), Query Frame = 1
Query: 127 PAWLSVILLGLEFVAAMVHVFGRASKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGASELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFLYEVRYHDIHHWYPECNYGQYIMLWDWLMGSLKPY 810
P + VI++G+E ++ +V + ++ + I + KHLDEF+ D LF+ N+ T+ F YH + +Y+P + W SE +++ LG+LV Y+ YD F RQKAP+RGN DA+NVHP EF GEY LHLV+ Y +P H+ + FI+ GG ASLNHTR+DI IP LY V+ HD+HH PE NYGQYIMLWD+L GS +PY
Sbjct: 41 PGFCIVIVVGMEILSHIVPIVFGSTTSGRIPIKAKHLDEFSSTDTLFIWINKLLTSFFVYHLLYVCYYSP---TIKWQWSEATMSNTLGSLVLFYIFYDFFYMNFHRILHIKELYSIIHKHHHRQKAPSRGNLDAINVHPFEFFVGEY-----LHLVTVYFIPCHMYAVAFFIIVGGVLASLNHTRYDIVIPGLYSVKVHDVHHRLPESNYGQYIMLWDYLFGSYRPY 260 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14406.3388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14406.3388.1 >prot_Ecto-sp13_S_contig14406.3388.1 ID=prot_Ecto-sp13_S_contig14406.3388.1|Name=mRNA_Ecto-sp13_S_contig14406.3388.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=309bp MSWFPKPPLLDGLLADVLVRGAGGGAAFSLVNAADTWQWWHYPAWLSVILback to top mRNA from alignment at Ecto-sp13_S_contig14406:1690..3779+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14406.3388.1 ID=mRNA_Ecto-sp13_S_contig14406.3388.1|Name=mRNA_Ecto-sp13_S_contig14406.3388.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2090bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14406:1690..3779+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14406:1690..3779+ >mRNA_Ecto-sp13_S_contig14406.3388.1 ID=mRNA_Ecto-sp13_S_contig14406.3388.1|Name=mRNA_Ecto-sp13_S_contig14406.3388.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=927bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14406:1690..3779+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |